Genome-Wide Analysis of MicroRNA Responses to the Phytohormone Abscisic Acid in Populus euphratica

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Genome-Wide Analysis of MicroRNA Responses to the Phytohormone Abscisic Acid in Populus euphratica is …
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scholarly articleQ13442814

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P356DOI10.3389/FPLS.2016.01184
P932PMC publication ID4988358
P698PubMed publication ID27582743

P2093author name stringXin Lu
Yi An
Hui Duan
Weilun Yin
Xinli Xia
Conglong Lian
P2860cites workThe interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.Q43207511
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Vesicle-associated membrane proteins 721 and 722 are required for unimpeded growth of Arabidopsis under ABA application.Q53350715
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Cell-specific vacuolar calcium storage mediated by CAX1 regulates apoplastic calcium concentration, gas exchange, and plant productivity in ArabidopsisQ59465283
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ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germinationQ79541972
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Four abiotic stress-induced miRNA families differentially regulated in the embryogenic and non-embryogenic callus tissues of Larix leptolepisQ84519141
Global identification of miRNAs and targets in Populus euphratica under salt stressQ86182940
Abscisic Acid Antagonizes Ethylene Production through the ABI4-Mediated Transcriptional Repression of ACS4 and ACS8 in ArabidopsisQ86282059
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Structural basis of abscisic acid signallingQ27657971
Structural insights into the mechanism of abscisic acid signaling by PYL proteinsQ27658077
The abscisic acid receptor PYR1 in complex with abscisic acidQ27658099
Structural mechanism of abscisic acid binding and signaling by dimeric PYR1.Q27658306
Molecular Mimicry Regulates ABA Signaling by SnRK2 Kinases and PP2C PhosphatasesQ27675794
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CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thalianaQ28201415
Origin, biogenesis, and activity of plant microRNAsQ28236171
MicroRNAS and their regulatory roles in plantsQ28237934
Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stagesQ28239195
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Triple loss of function of protein phosphatases type 2C leads to partial constitutive response to endogenous abscisic acidQ39413005
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Abscisic acid represses the transcription of chloroplast genesQ42121588
Arabidopsis PYR/PYL/RCAR receptors play a major role in quantitative regulation of stomatal aperture and transcriptional response to abscisic acid.Q42508737
Inactivation of AtRac1 by abscisic acid is essential for stomatal closureQ28344281
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2Q29547403
Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteinsQ29616860
microRNA-directed phasing during trans-acting siRNA biogenesis in plantsQ29618562
Functional analysis of TaDi19A, a salt-responsive gene in wheatQ30877593
Mechanisms of plant survival and mortality during drought: why do some plants survive while others succumb to drought?Q33329244
Ectopic expression of miR160 results in auxin hypersensitivity, cytokinin hyposensitivity, and inhibition of symbiotic nodule development in soybeanQ33356061
The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundariesQ33367619
Drought, ozone, ABA and ethylene: new insights from cell to plant to communityQ33511535
A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.Q33608300
Association of cytochrome b5 with ETR1 ethylene receptor signaling through RTE1 in ArabidopsisQ33692973
Integrated profiling of microRNAs and mRNAs: microRNAs located on Xq27.3 associate with clear cell renal cell carcinomaQ33799049
Ectopic expression of a tomato 9-cis-epoxycarotenoid dioxygenase gene causes over-production of abscisic acidQ33912522
Genome-wide analysis of salt-responsive and novel microRNAs in Populus euphratica by deep sequencingQ33987711
Widespread translational inhibition by plant miRNAs and siRNAsQ34011733
Genome-wide profiling of novel and conserved Populus microRNAs involved in pathogen stress response by deep sequencingQ34079008
Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in ArabidopsisQ34088871
Identification of novel and conserved Populus tomentosa microRNA as components of a response to water stressQ34194838
Genome-wide identification and expression analysis of heat-responsive and novel microRNAs in Populus tomentosaQ34283292
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotideQ34308999
miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experimentsQ34312606
Specific oxidative cleavage of carotenoids by VP14 of maizeQ34429306
miR172b controls the transition to autotrophic development inhibited by ABA in ArabidopsisQ34746327
Transcriptome-wide identification and characterization of microRNAs from castor bean (Ricinus communis L.).Q34875035
miR394 and LCR are involved in Arabidopsis salt and drought stress responses in an abscisic acid-dependent mannerQ35065416
psRNATarget: a plant small RNA target analysis serverQ35075585
Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphraticaQ35099355
Elucidation of the Indirect Pathway of Abscisic Acid Biosynthesis by Mutants, Genes, and EnzymesQ35106015
Family-wide survey of miR169s and NF-YAs and their expression profiles response to abiotic stress in maize rootsQ35121961
The resurrection genome of Boea hygrometrica: A blueprint for survival of dehydrationQ35590095
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal cladesQ35633577
Transcriptomic Analysis Reveals Possible Influences of ABA on Secondary Metabolism of Pigments, Flavonoids and Antioxidants in Tomato Fruit during RipeningQ35656368
The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulationQ35732742
Transcriptome-Wide Identification of miRNA Targets under Nitrogen Deficiency in Populus tomentosa Using Degradome SequencingQ35814122
Deep annotation of Populus trichocarpa microRNAs from diverse tissue setsQ35839870
The developmental role of microRNA in plantsQ36011092
Evaluation of Appropriate Reference Genes for Reverse Transcription-Quantitative PCR Studies in Different Tissues of a Desert Poplar via Comparision of Different AlgorithmsQ36183982
Mobile small RNAs regulate genome-wide DNA methylationQ36598950
MicroRNAs play critical roles during plant development and in response to abiotic stresses.Q36607227
MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of ArabidopsisQ36636692
The role of small RNAs in abiotic stress.Q36798714
Exchangers man the pumps: Functional interplay between proton pumps and proton-coupled Ca exchangersQ37080215
The role of microRNAs and other endogenous small RNAs in plant stress responses.Q37154886
Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis.Q37368434
Jacalin lectin At5g28520 is regulated by ABA and miR846.Q37538670
The Arabidopsis cytochrome P450 CYP707A encodes ABA 8'-hydroxylases: key enzymes in ABA catabolismQ37543737
Conserved miR164-targeted NAC genes negatively regulate drought resistance in riceQ37710235
ABA receptors: the START of a new paradigm in phytohormone signallingQ37762642
Plant cation/H+ exchangers (CAXs): biological functions and genetic manipulationsQ37888768
ABA signal transduction at the crossroad of biotic and abiotic stress responsesQ37933473
NAC proteins: regulation and role in stress tolerance.Q37996659
Improvement of plant abiotic stress tolerance through modulation of the polyamine pathway.Q38176679
The roles of polyamines during the lifespan of plants: from development to stressQ38198559
Non-coding RNA transcription and RNA-directed DNA methylation in ArabidopsisQ38223348
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance.Q38288532
Role of microRNAs in plant drought tolerance.Q38316312
Three SnRK2 protein kinases are the main positive regulators of abscisic acid signaling in response to water stress in ArabidopsisQ38349217
agriGO: a GO analysis toolkit for the agricultural communityQ38373934
Differential profiling analysis of miRNAs reveals a regulatory role in low N stress response of PopulusQ38470519
Active ROP2 GTPase inhibits ABA- and CO2-induced stomatal closureQ39090285
Two cotton Cys2/His2-type zinc-finger proteins, GhDi19-1 and GhDi19-2, are involved in plant response to salt/drought stress and abscisic acid signalingQ39175059
Transcriptional regulation of Arabidopsis MIR168a and argonaute1 homeostasis in abscisic acid and abiotic stress responsesQ39177039
Genomic insights into salt adaptation in a desert poplarQ39198215
Regulators of PP2C phosphatase activity function as abscisic acid sensors.Q39198475
GmNFYA3, a target gene of miR169, is a positive regulator of plant tolerance to drought stressQ39302989
Arabidopsis drought-induced protein Di19-3 participates in plant response to drought and high salinity stressesQ39373564
P4510describes a project that usesDESeq2Q113018293
P921main subjectmicroRNAQ310899
Populus euphraticaQ1374188
P304page(s)1184
P577publication date2016-08-17
P1433published inFrontiers in Plant ScienceQ27723840
P1476titleGenome-Wide Analysis of MicroRNA Responses to the Phytohormone Abscisic Acid in Populus euphratica
P478volume7

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cites work (P2860)
Q49791888Characterization of Conserved and Novel microRNAs in Lilium lancifolium Thunb. by High-Throughput Sequencing
Q55362234Exploration of ABA Responsive miRNAs Reveals a New Hormone Signaling Crosstalk Pathway Regulating Root Growth of Populus euphratica.
Q92062438MiR319 mediated salt tolerance by ethylene
Q47701156MicroRNA expression changes following synthesis of three full-sib Populus triploid populations with different heterozygosities
Q42362877Physiological and transcriptome analysis of heteromorphic leaves and hydrophilic roots in response to soil drying in desert Populus euphratica
Q33701657Transcriptome-Wide Analysis of Botrytis elliptica Responsive microRNAs and Their Targets in Lilium Regale Wilson by High-Throughput Sequencing and Degradome Analysis

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