A comparative study of SVDquartets and other coalescent-based species tree estimation methods

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A comparative study of SVDquartets and other coalescent-based species tree estimation methods is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1186/1471-2164-16-S10-S2
P932PMC publication ID4602346
P698PubMed publication ID26449249
P5875ResearchGate publication ID282588602

P50authorTandy WarnowQ16479
Siavash MirarabQ30503001
P2093author name stringAshu Gupta
Ruth Davidson
Jed Chou
Mike Nute
Shashank Yaduvanshi
P2860cites workA phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencingQ21133738
Whole-genome analyses resolve early branches in the tree of life of modern birdsQ21558572
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsQ27860746
Molecular and genomic data identify the closest living relative of primatesQ28255582
Phylotranscriptomic analysis of the origin and early diversification of land plantsQ28652071
FastTree 2--approximately maximum-likelihood trees for large alignmentsQ28748616
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular datingQ29547645
Bayesian inference of species trees from multilocus dataQ29547649
Gene tree discordance, phylogenetic inference and the multispecies coalescentQ29614318
Is a new and general theory of molecular systematics emerging?Q29614319
Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent.Q30882120
Coalescent methods for estimating phylogenetic treesQ33462194
A maximum pseudo-likelihood approach for estimating species trees under the coalescent modelQ33714988
Accurate phylogenetic tree reconstruction from quartets: a heuristic approachQ34035003
RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimationQ34087821
Fast and accurate methods for phylogenomic analysesQ34094894
ASTRAL: genome-scale coalescent-based species tree estimationQ34103194
Is recombination a problem for species-tree analyses?Q34116736
BBCA: Improving the scalability of *BEAST using random binningQ34552487
Disk covering methods improve phylogenomic analysesQ34552897
Quartet inference from SNP data under the coalescent modelQ34974662
INDELible: a flexible simulator of biological sequence evolutionQ34979731
Concatenation Analyses in the Presence of Incomplete Lineage SortingQ35660743
Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic AnalysesQ35667118
Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis.Q36126712
Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent modelQ36236100
Genome-scale coestimation of species and gene trees.Q36580593
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genesQ36614037
Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sitesQ41191336
Phylogenetic analysis at deep timescales: unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrumQ44161169
Quartet MaxCut: a fast algorithm for amalgamating quartet treesQ45343934
Land plant origins and coalescence confusionQ46165354
On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree MethodsQ46753063
Statistical binning enables an accurate coalescent-based estimation of the avian treeQ46798844
Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage SortingQ46846521
BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysisQ48182406
Estimating species trees from unrooted gene trees.Q51584488
BEST: Bayesian estimation of species trees under the coalescent model.Q51868973
Naive binning improves phylogenomic analysesQ87074378
P407language of work or nameEnglishQ1860
P304page(s)S2
P577publication date2015-10-02
P1433published inBMC GenomicsQ15765854
P1476titleA comparative study of SVDquartets and other coalescent-based species tree estimation methods.
P478volume16 Suppl 10

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