| scholarly article | Q13442814 |
| P50 | author | Daniel E. Dykhuizen | Q125800223 |
| P2093 | author name string | L Green | |
| P2860 | cites work | The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications | Q24498207 |
| The neighbor-joining method: a new method for reconstructing phylogenetic trees | Q25939010 | ||
| Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli | Q33649921 | ||
| Distribution and abundance of insertion sequences among natural isolates of Escherichia coli. | Q33952758 | ||
| Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB. | Q33954640 | ||
| Molecular evolution of the Escherichia coli chromosome. III. Clonal frames | Q33957087 | ||
| The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias | Q34049602 | ||
| Molecular cloning, correlation of genetic and restriction maps, and determination of the direction of transcription of gnd of Escherichia coli | Q34145833 | ||
| Confidence interval for the number of selectively neutral amino acid polymorphisms | Q34343443 | ||
| Evidence for clonal population structure in Escherichia coli | Q36245532 | ||
| Standard reference strains of Escherichia coli from natural populations | Q36297690 | ||
| Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes | Q36416021 | ||
| Multilocus genetic structure in natural populations of Escherichia coli | Q37607072 | ||
| Clonal analysis of descent and virulence among selected Escherichia coli | Q39747509 | ||
| Nucleotide sequences of the gnd genes from nine natural isolates of Escherichia coli: evidence of intragenic recombination as a contributing factor in the evolution of the polymorphic gnd locus | Q39942021 | ||
| Genetics of the Enterobacteriaceae. C. Molecular relationships among members of the Enterobacteriaceae | Q40006115 | ||
| The population genetics of Escherichia coli | Q40080341 | ||
| Periodic selection, infectious gene exchange and the genetic structure of E. coli populations. | Q40329946 | ||
| Six widespread bacterial clones among Escherichia coli K1 isolates. | Q40599761 | ||
| From the national institutes of health. Summary of a workshop on the clone concept in the epidemiology, taxonomy, and evolution of the enterobacteriaceae and other bacteria | Q41530562 | ||
| Structure and sequence of the rfb (O antigen) gene cluster of Salmonella serovar typhimurium (strain LT2) | Q42616353 | ||
| Enzyme polymorphism and genetic population structure in Escherichia coli and Shigella | Q42665980 | ||
| Phylogenetic analysis using insertion sequence fingerprinting in Escherichia coli | Q45327401 | ||
| The molecular evolution of bacterial alkaline phosphatase: correlating variation among enteric bacteria to experimental manipulations of the protein | Q48249836 | ||
| DNA sequence of the Escherichia coli gene, gnd, for 6-phosphogluconate dehydrogenase | Q48392261 | ||
| Statistical tests for detecting gene conversion. | Q52522452 | ||
| Electrophoretic Variation in Escherichia coli from Natural Sources | Q54452303 | ||
| Localized sex in bacteria | Q59062612 | ||
| Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree | Q68419970 | ||
| Limitations of the evolutionary parsimony method of phylogenetic analysis | Q68701941 | ||
| Clustered Third-Base Substitutions Among Wild Strains of Escherichia coli | Q70266021 | ||
| P433 | issue | 22 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Escherichia coli | Q25419 |
| P304 | page(s) | 7257-7268 | |
| P577 | publication date | 1991-11-01 | |
| P1433 | published in | Journal of Bacteriology | Q478419 |
| P1476 | title | Recombination in Escherichia coli and the definition of biological species | |
| P478 | volume | 173 |
| Q93086283 | A Genome-Based Species Taxonomy of the Lactobacillus Genus Complex |
| Q48057168 | A comparison of the nucleotide sequences of the adk and recA genes of pathogenic and commensal Neisseria species: evidence for extensive interspecies recombination within adk. |
| Q33367141 | A new perspective on Listeria monocytogenes evolution |
| Q37808846 | A species concept for bacteria based on adaptive divergence |
| Q35220334 | A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin |
| Q24568178 | Accelerated evolution and Muller's rachet in endosymbiotic bacteria |
| Q33994832 | Acquisition of the rfb-gnd cluster in evolution of Escherichia coli O55 and O157. |
| Q34588577 | Analysis of core housekeeping and virulence genes reveals cryptic lineages of Clostridium perfringens that are associated with distinct disease presentations. |
| Q21131626 | Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis |
| Q31119767 | Approaches to prokaryotic biodiversity: a population genetics perspective. |
| Q33447711 | Assessing reproductive isolation in highly diverse communities of the lichen-forming fungal genus peltigera |
| Q36292932 | Assessing the genetic structure of microbial populations |
| Q33946964 | Bacteria are different: observations, interpretations, speculations, and opinions about the mechanisms of adaptive evolution in prokaryotes |
| Q34458252 | Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum |
| Q22066289 | Biogeography of the Sulfolobus islandicus pan-genome |
| Q37738555 | Biological species are universal across Life's domains |
| Q36637054 | Borrelia burgdorferi is clonal: implications for taxonomy and vaccine development. |
| Q34987699 | Brucella evolution and taxonomy |
| Q39339509 | Case of localized recombination in 23S rRNA genes from divergent bradyrhizobium lineages associated with neotropical legumes |
| Q60061368 | Characterization of Actinomycetes from Smear Ripened Cheeses – A Polyphasic Approach |
| Q36162296 | Chips and SNPs, bugs and thugs: a molecular sleuthing perspective |
| Q36755112 | Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species |
| Q36773663 | Concordance of gene genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis |
| Q41589290 | Contrasting inter- and intraspecies recombination patterns in the "Harveyi clade" vibrio collected over large spatial and temporal scales |
| Q44387467 | Contribution of mutation and RNA recombination to the evolution of a plant pathogenic RNA. |
| Q28750450 | Cryptic lineages of the genus Escherichia |
| Q35680920 | Cryptic speciation and recombination in the aflatoxin-producing fungus Aspergillus flavus |
| Q38736969 | DOES RECOMBINATION CONSTRAIN NEUTRAL DIVERGENCE AMONG BACTERIAL TAXA? |
| Q54509542 | Decreasing the effects of horizontal gene transfer on bacterial phylogeny: the Escherichia coli case study. |
| Q30300959 | Defining the phylogenomics of Shigella species: a pathway to diagnostics |
| Q50108488 | Detection of recombination among Salmonella enterica strains using the incongruence length difference test |
| Q36933533 | Diverse organization of genes of the beta-ketoadipate pathway in members of the marine Roseobacter lineage |
| Q62739847 | Each of 3,323 metabolic innovations in the evolution of arose through the horizontal transfer of a single DNA segment |
| Q36387289 | Ecological adaptation in bacteria: speciation driven by codon selection |
| Q33782317 | Electrophoretic variation in adenylate kinase of Neisseria meningitidis is due to inter- and intraspecies recombination |
| Q30588690 | Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data. |
| Q34423616 | Evidence for Acquisition in Nature of a Chromosomal 2,4-Dichlorophenoxyacetic Acid/(alpha)-Ketoglutarate Dioxygenase Gene by Different Burkholderia spp. |
| Q47846602 | Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype |
| Q34006779 | Evidence that the Campylobacter fetus sap locus is an ancient genomic constituent with origins before mammals and reptiles diverged |
| Q50106473 | Evolution of microbial genomes: sequence acquisition and loss |
| Q47143320 | Evolution with a seed bank: The population genetic consequences of microbial dormancy |
| Q34131691 | Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept |
| Q36132409 | Evolutionary genetics of the proline permease gene (putP) and the control region of the proline utilization operon in populations of Salmonella and Escherichia coli |
| Q30794348 | Evolutionary genomics of Borrelia burgdorferi sensu lato: findings, hypotheses, and the rise of hybrids |
| Q50117948 | Evolutionary implications of the frequent horizontal transfer of mismatch repair genes |
| Q33732744 | Expression of a clone specific DNA sequence from Staphylococcus aureus in Escherichia coli |
| Q33294659 | Extensive horizontal transfer of core genome genes between two Lactobacillus species found in the gastrointestinal tract |
| Q47854732 | Frequent interspecific genetic exchange between commensal Neisseriae and Neisseria meningitidis |
| Q91474065 | Gene gain and loss push prokaryotes beyond the homologous recombination barrier and accelerate genome sequence divergence |
| Q36054447 | Genetic Structure of Rhizobium etli biovar phaseoli Associated with Wild and Cultivated Bean Plants (Phaseolus vulgaris and Phaseolus coccineus) in Morelos, Mexico. |
| Q39800043 | Genetic diversity of an Italian Rhizobium meliloti population from different Medicago sativa varieties. |
| Q39399828 | Genetic diversity of native soybean bradyrhizobia from different topographical regions along the southern slopes of the Himalayan Mountains in Nepal |
| Q42732246 | Genetic diversity within E.coli |
| Q24564226 | Genetic exchange and plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing |
| Q39797586 | Genetic structure of a lotic population of Burkolderia (Pseudomonas) cepacia |
| Q39482864 | Genetic structure of natural populations of Escherichia coli in wild hosts on different continents |
| Q34157691 | Genome evolution in bacterial endosymbionts of insects |
| Q34532363 | Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli |
| Q37282936 | Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens |
| Q42690723 | Genomic divergence and cohesion in a species of pelagic freshwater bacteria |
| Q42961961 | Genomics and the bacterial species problem |
| Q37192380 | Hierarchical analysis of linkage disequilibrium in Rhizobium populations: evidence for sex? |
| Q36116087 | Homology among Escherichia coli K1 and K92 polysialytransferases |
| Q34303457 | Horizontal gene transfer and the evolution of microvirid coliphage genomes |
| Q30956112 | Horizontal gene transfer, dispersal and haloarchaeal speciation |
| Q34220245 | Horizontal gene transfer: a critical view |
| Q44239378 | Host-symbiont stability and fast evolutionary rates in an ant-bacterium association: cospeciation of camponotus species and their endosymbionts, candidatus blochmannia |
| Q34347100 | How hyperthermophiles adapt to change their lives: DNA exchange in extreme conditions |
| Q28659353 | How natural a kind is "eukaryote?" |
| Q35804299 | Hybrid Vibrio vulnificus. |
| Q35601019 | Identification of a region of genetic variability among Bacillus anthracis strains and related species |
| Q39895580 | Identification, expression, and DNA sequence of the GDP-mannose biosynthesis genes encoded by the O7 rfb gene cluster of strain VW187 (Escherichia coli O7:K1) |
| Q39680086 | Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches |
| Q35895606 | Impermanence of bacterial clones |
| Q34889744 | Interactions in the microbiome: communities of organisms and communities of genes |
| Q35842420 | Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria |
| Q38928214 | Intracellular Symbiotic Bacteria of Camponotus textor, Forel (Hymenoptera, Formicidae). |
| Q33783262 | Isolation, propagation and characterisation of Cryptosporidium. |
| Q37553049 | Large-scale population structure of human commensal Escherichia coli isolates |
| Q35583479 | Lateral gene transfer: when will adolescence end? |
| Q34790534 | Limited boundaries for extensive horizontal gene transfer among Salmonella pathogens |
| Q35585678 | Linear chromosomes of Lyme disease agent spirochetes: genetic diversity and conservation of gene order. |
| Q34609643 | Methods for estimating gene frequencies and detecting selection in bacterial populations. |
| Q38759067 | Microdiversity shapes the traits, niche space, and biogeography of microbial taxa. |
| Q30478696 | Mismatch induced speciation in Salmonella: model and data |
| Q41680335 | Mismatch repair: origin of species? |
| Q50139588 | Molecular analysis of Salmonella enterica serotype Dublin: building bridges between population genetic and molecular epidemiological studies |
| Q34617029 | Molecular evolution of the Escherichia coli chromosome. VI. Two regions of high effective recombination. |
| Q35038908 | Molecular genetic basis of allelic polymorphism in malate dehydrogenase (mdh) in natural populations of Escherichia coli and Salmonella enterica |
| Q33578006 | Molecular markers reveal cryptic sex in the human pathogen Coccidioides immitis |
| Q36395099 | Mutation, recombination, and incipient speciation of bacteria in the laboratory |
| Q37247776 | Mutators and sex in bacteria: conflict between adaptive strategies |
| Q38872283 | NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats. |
| Q35905264 | Nucleotide polymorphism in colicin E1 and Ia plasmids from natural isolates of Escherichia coli |
| Q28776155 | Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi |
| Q33943883 | Obscured phylogeny and possible recombinational dormancy in Escherichia coli |
| Q73564976 | Organization and structure of the Giardia genome |
| Q35575478 | Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes |
| Q21145744 | Patterns of gene flow define species of thermophilic Archaea |
| Q33387416 | Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains |
| Q39502754 | Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains |
| Q33233711 | Phylogenetic identification of lateral genetic transfer events |
| Q33953353 | Phylogenetic incongruence arising from fragmented speciation in enteric bacteria |
| Q34228313 | Phylogenetic incongruence in E. coli O104: understanding the evolutionary relationships of emerging pathogens in the face of homologous recombination |
| Q42687346 | Phylogenetic relationships reveal recombination among isolates of cauliflower mosaic virus |
| Q30978289 | Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. |
| Q35678640 | Phylogeny and fitness of Vibrio fischeri from the light organs of Euprymna scolopes in two Oahu, Hawaii populations |
| Q36543363 | Population genomics in natural microbial communities |
| Q42136525 | Population genomics of early events in the ecological differentiation of bacteria. |
| Q34762116 | Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle |
| Q36341676 | Practically delineating bacterial species with genealogical concordance |
| Q33861979 | Progress toward a general species concept |
| Q24675394 | Prokaryote diversity and taxonomy: current status and future challenges |
| Q37385941 | Prokaryotic evolution and the tree of life are two different things |
| Q29617350 | Prokaryotic evolution in light of gene transfer |
| Q34083461 | Prokaryotic systematics in the genomics era. |
| Q41844504 | Rapid divergence of two classes of Haemophilus ducreyi |
| Q35895593 | Recombinant transfer in the basic genome of Escherichia coli. |
| Q54572405 | Recombination and clonality in natural populations of Escherichia coli. |
| Q42136149 | Recombination in Thermotoga: implications for species concepts and biogeography |
| Q34588929 | Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences |
| Q36314911 | Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing |
| Q51179278 | Reconciling ecological and genomic divergence among lineages of listeria under an "extended mosaic genome concept". |
| Q39028194 | Reconstructing the Ancestral Relationships Between Bacterial Pathogen Genomes. |
| Q33975727 | Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology |
| Q33191676 | Roles of selection and recombination in the evolution of type I restriction-modification systems in enterobacteria |
| Q24673366 | Searching for species in haloarchaea |
| Q36099939 | Sequence-based differentiation of strains in the Mycobacterium avium complex |
| Q33910238 | Sequence-based typing of genetic targets encoded outside of the O-antigen gene cluster is indicative of Shiga toxin-producing Escherichia coli serogroup lineages |
| Q71751695 | Sex in Escherichia coli does not disrupt the clonal structure of the population: evidence from random amplified polymorphic DNA and restriction-fragment-length polymorphism |
| Q34487636 | Simultaneous analysis of multiple enzymes increases accuracy of pulsed-field gel electrophoresis in assigning genetic relationships among homogeneous Salmonella strains |
| Q24613060 | Species Numbers in Bacteria |
| Q35966460 | Structures of and allelic diversity and relationships among the major outer membrane protein (ompA) genes of the four chlamydial species |
| Q49588422 | The Experimental Study of Bacterial Evolution and Its Implications for the Modern Synthesis of Evolutionary Biology |
| Q39755101 | The FimH A27V mutation is pathoadaptive for urovirulence in Escherichia coli B2 phylogenetic group isolates |
| Q32171472 | The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations |
| Q33261434 | The bacterial species definition in the genomic era. |
| Q36509356 | The current status of species recognition and identification in Aspergillus |
| Q41850894 | The diversity of alleles at the hsd locus in natural populations of Escherichia coli |
| Q34095510 | The evolution of human pathogens: examples and clinical implications |
| Q38287799 | The evolution of the heat-shock protein GroEL from Buchnera, the primary endosymbiont of aphids, is governed by positive selection |
| Q33975421 | The evolutionary biology and population genetics underlying fungal strain typing |
| Q40299603 | The evolutionary path to extraintestinal pathogenic, drug-resistant Escherichia coli is marked by drastic reduction in detectable recombination within the core genome |
| Q54247539 | The lytic Myoviridae of Enterobacteriaceae form tight recombining assemblages separated by discontinuities in genome average nucleotide identity and lateral gene flow. |
| Q41081153 | The maintenance of sex in bacteria is ensured by its potential to reload genes. |
| Q37692844 | The population genetics of commensal Escherichia coli |
| Q86645185 | The use of colony development for the characterization of bacterial communities in soil and on roots |
| Q54552024 | Thegndgene ofBuchneraas a new, effective DNA barcode for aphid identification |
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| Q37627712 | Tuberculosis and leprosy in perspective |
| Q34422803 | Variability among Rhizobium Strains Originating from Nodules of Vicia faba. |
| Q41474909 | When does a clone deserve a name? A perspective on bacterial species based on population genetics |
| Q42594522 | rRNA and nifD phylogeny of Bradyrhizobium from sites across the Pacific Basin |
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