Ontogenetic Characterization of the Intestinal Microbiota of Channel Catfish through 16S rRNA Gene Sequencing Reveals Insights on Temporal Shifts and the Influence of Environmental Microbes

scientific article

Ontogenetic Characterization of the Intestinal Microbiota of Channel Catfish through 16S rRNA Gene Sequencing Reveals Insights on Temporal Shifts and the Influence of Environmental Microbes is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2016PLoSO..1166379B
P356DOI10.1371/JOURNAL.PONE.0166379
P8608Fatcat IDrelease_f4pgwdxxpfdgrbdggrg62omlfy
P932PMC publication ID5113000
P698PubMed publication ID27846300

P2093author name stringBrian C Small
Kelly S Swanson
Brian C Peterson
Jacob W Bledsoe
P2860cites workDevelopment of the human infant intestinal microbiotaQ21003936
Reagent and laboratory contamination can critically impact sequence-based microbiome analysesQ21146690
Moving pictures of the human microbiomeQ21999542
The human microbiome: our second genomeQ24601696
QIIME allows analysis of high-throughput community sequencing dataQ24616873
The genus Aeromonas: taxonomy, pathogenicity, and infectionQ24646656
The mucosal immune system of fish: the evolution of tolerating commensals while fighting pathogensQ27026950
Interactions between the microbiota and the immune systemQ27028155
Age and microenvironment outweigh genetic influence on the Zucker rat microbiomeQ27321491
Diversity, stability and resilience of the human gut microbiotaQ28274959
The gut microbiota--masters of host development and physiologyQ28286102
Multilocus sequence analysis of the genus BradyrhizobiumQ28308261
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARBQ29547254
Search and clustering orders of magnitude faster than BLASTQ29547431
UCHIME improves sensitivity and speed of chimera detectionQ29547664
PyNAST: a flexible tool for aligning sequences to a template alignmentQ29616628
Diversity and Succession of the Intestinal Bacterial Community of the Maturing Broiler ChickenQ33194646
Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiotaQ33201187
Distance-based tests for homogeneity of multivariate dispersionsQ33236727
Oxytetracycline treatment reduces bacterial diversity of intestinal microbiota of Atlantic salmonQ33378631
Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheriesQ33693827
Longitudinal investigation of the age-related bacterial diversity in the feces of commercial pigsQ33928410
The colonization dynamics of the gut microbiota in tilapia larvaeQ33968967
Host species as a strong determinant of the intestinal microbiota of fish larvaeQ34172923
PCR-TTGE analysis of 16S rRNA from rainbow trout (Oncorhynchus mykiss) gut microbiota reveals host-specific communities of active bacteriaQ34185645
Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysisQ34225669
Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndromeQ34362427
PEAR: a fast and accurate Illumina Paired-End reAd mergeR.Q34379012
Intestinal microbiota composition in fishes is influenced by host ecology and environmentQ34391846
Impact of temporal variation on design and analysis of mouse knockout phenotyping studiesQ34401154
The intestinal microbiome of fish under starvation.Q34525463
Ecological theory as a foundation to control pathogenic invasion in aquacultureQ34662065
Taxonomic and functional metagenomic profiling of gastrointestinal tract microbiome of the farmed adult turbot (Scophthalmus maximus).Q34784765
Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fishQ35019295
Network analysis highlights complex interactions between pathogen, host and commensal microbiotaQ35078480
Characterization of the gut microbiota of three commercially valuable warmwater fish speciesQ35094664
Common contaminants in next-generation sequencing that hinder discovery of low-abundance microbesQ35170475
Evidence for a core gut microbiota in the zebrafish.Q35222659
Comparative study on gastrointestinal microbiota of eight fish species with different feeding habitsQ35311575
Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiotaQ35613911
Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua).Q35617441
Potassium permanganate elicits a shift of the external fish microbiome and increases host susceptibility to columnaris diseaseQ35690107
Impact of Fishmeal Replacement in Diets for Gilthead Sea Bream (Sparus aurata) on the Gastrointestinal Microbiota Determined by Pyrosequencing the 16S rRNA GeneQ35758702
The composition of the zebrafish intestinal microbial community varies across development.Q35764480
Ontogenetic Differences in Dietary Fat Influence Microbiota Assembly in the Zebrafish GutQ35792490
Channel catfish immunoglobulins: repertoire and expression.Q36253926
Microbiota regulate intestinal absorption and metabolism of fatty acids in the zebrafishQ36454308
Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selectionQ36821642
Probiotics and immunity: a fish perspectiveQ37706846
Development of the human gastrointestinal microbiota and insights from high-throughput sequencingQ37870427
Ontogeny of channel catfish lymphoid organsQ38456591
Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch).Q42723200
Enhancement of the resistance of tilapia and grass carp to experimental Aeromonas hydrophila and Edwardsiella tarda infections by several polysaccharidesQ43765648
Novel ecological niche of Cetobacterium somerae, an anaerobic bacterium in the intestinal tracts of freshwater fishQ46943493
16S rDNA-based analysis of dominant bacterial populations associated with early life stages of coho salmon (Oncorhynchus kisutch).Q54610036
The development of the gut microbiota in rainbow trout (Oncorhynchus mykiss) is affected by first feeding and diet typeQ58496329
Prevalence of Streptococcus iniae in tilapia, hybrid striped bass, and channel catfish on commercial fish farms in the United StatesQ73521432
Host-microbiota interactions within the fish intestinal ecosystemQ83201616
Gibel carp Carassius auratus gut microbiota after oral administration of trimethoprim/ sulfamethoxazoleQ84622347
P275copyright licenseCreative Commons CC0 LicenseQ6938433
P6216copyright statuscopyrighted, dedicated to the public domain by copyright holderQ88088423
P433issue11
P407language of work or nameEnglishQ1860
P304page(s)e0166379
P577publication date2016-11-15
P1433published inPLOS OneQ564954
P1476titleOntogenetic Characterization of the Intestinal Microbiota of Channel Catfish through 16S rRNA Gene Sequencing Reveals Insights on Temporal Shifts and the Influence of Environmental Microbes
P478volume11

Reverse relations

cites work (P2860)
Q93092219Comparative analysis of the composition and function of fecal-gut bacteria in captive juvenile Crocodylus siamensis between healthy and anorexic individuals
Q55035073Comparison of Channel Catfish and Blue Catfish Gut Microbiota Assemblages Shows Minimal Effects of Host Genetics on Microbial Structure and Inferred Function.
Q55266332Complete Genome Sequence of Multidrug-Resistant Plesiomonas shigelloides Strain MS-17-188.
Q90194160Diet and diet-associated bacteria shape early microbiome development in Yellowtail Kingfish (Seriola lalandi)
Q60912899Dietary fatty acid source has little effect on the development of the immune system in the pyloric caeca of Atlantic salmon fry
Q90315554Ecological and Ontogenetic Components of Larval Lake Sturgeon Gut Microbiota Assembly, Successional Dynamics, and Ecological Evaluation Of Neutral Community Processes
Q92071434Effect of Diet on the Enteric Microbiome of the Wood-Eating Catfish Panaque nigrolineatus
Q64115612Effects of a phytogenic, alone and associated with potassium diformate, on tilapia growth, immunity, gut microbiome and resistance against francisellosis
Q92376698Effects of dietary supplementation with a microalga (Schizochytrium sp.) on the hemato-immunological, and intestinal histological parameters and gut microbiota of Nile tilapia in net cages
Q57126326Fish Gut Microbiome: Current Approaches and Future Perspectives
Q60046906Genetic Effects on the Gut Microbiota Assemblages of Hybrid Fish From Parents With Different Feeding Habits
Q90207950Habitat and seasonality shape the structure of tench (Tinca tinca L.) gut microbiome
Q52332776Host Age Affects the Development of Southern Catfish Gut Bacterial Community Divergent From That in the Food and Rearing Water.
Q64960027Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar) reveals stage-specific microbial signatures.
Q92240168Systematic evaluation of the gut microbiome of swamp eel (Monopterus albus) by 16S rRNA gene sequencing
Q48340812Under control: how a dietary additive can restore the gut microbiome and proteomic profile, and improve disease resilience in a marine teleostean fish fed vegetable diets

Search more.