| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bib/GalataBLHLSPSBM18 |
| P356 | DOI | 10.1093/BIB/BBW122 |
| P8608 | Fatcat ID | release_6qkcds6gxvfwzklzs4hgwmrvry |
| P698 | PubMed publication ID | 28013236 |
| P50 | author | Markus Bischoff | Q38362130 |
| Cedric C Laczny | Q55979722 | ||
| Andre Franke | Q67470670 | ||
| Valentina Galata | Q85384765 | ||
| Christina Backes | Q102379220 | ||
| P2093 | author name string | Andreas Keller | |
| Lutz von Müller | |||
| Howard Li | |||
| Georg Hemmrich-Stanisak | |||
| Achim Plum | |||
| Andreas Emanuel Posch | |||
| Laura Smoot | |||
| Susanne Schmolke | |||
| P2860 | cites work | Metagenomic microbial community profiling using unique clade-specific marker genes | Q24599864 |
| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing | Q24629733 | ||
| MEGAN analysis of metagenomic data | Q24673516 | ||
| PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes | Q24814463 | ||
| Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm | Q28607081 | ||
| Routine use of microbial whole genome sequencing in diagnostic and public health microbiology | Q28728617 | ||
| Fast and sensitive protein alignment using DIAMOND | Q29011988 | ||
| Trimmomatic: a flexible trimmer for Illumina sequence data | Q29547278 | ||
| Database resources of the National Center for Biotechnology Information | Q29614751 | ||
| A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea | Q29616591 | ||
| Identification of rare pathogenic bacteria in a clinical microbiology laboratory: impact of matrix-assisted laser desorption ionization-time of flight mass spectrometry | Q29616596 | ||
| Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry | Q29616600 | ||
| Prokka: rapid prokaryotic genome annotation | Q29616643 | ||
| DNA-DNA hybridization values and their relationship to whole-genome sequence similarities | Q29617100 | ||
| NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy | Q29617901 | ||
| Transforming clinical microbiology with bacterial genome sequencing. | Q30356166 | ||
| SpectraBank: an open access tool for rapid microbial identification by MALDI-TOF MS fingerprinting | Q30485598 | ||
| Serratia ureilytica sp. nov., a novel urea-utilizing species | Q31004931 | ||
| Matrix-assisted laser desorption ionization-time of flight mass spectrometry for the discrimination of food-borne microorganisms | Q33233232 | ||
| High-throughput identification of bacteria and yeast by matrix-assisted laser desorption ionization-time of flight mass spectrometry in conventional medical microbiology laboratories | Q33522362 | ||
| Performance of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory | Q33539519 | ||
| Phylogenetic analysis of the genera Proteus, Morganella and Providencia by comparison of rpoB gene sequences of type and clinical strains suggests the reclassification of Proteus myxofaciens in a new genus, Cosenzaea gen. nov., as Cosenzaea myxofaci | Q33658336 | ||
| Kraken: ultrafast metagenomic sequence classification using exact alignments | Q33742022 | ||
| RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles | Q33807870 | ||
| Interactive metagenomic visualization in a Web browser | Q34036161 | ||
| Single-cell genome sequencing: current state of the science | Q34045945 | ||
| Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences | Q34046549 | ||
| Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology | Q34076539 | ||
| Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage | Q34101446 | ||
| Hospital-acquired infections due to gram-negative bacteria | Q34114983 | ||
| Growing unculturable bacteria | Q34290686 | ||
| TUIT, a BLAST-based tool for taxonomic classification of nucleotide sequences | Q34293497 | ||
| The PhyloPythiaS web server for taxonomic assignment of metagenome sequences | Q34321119 | ||
| What is new in clinical microbiology-microbial identification by MALDI-TOF mass spectrometry: a paper from the 2011 William Beaumont Hospital Symposium on molecular pathology | Q34337477 | ||
| The microbial pan-genome | Q34453982 | ||
| CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers. | Q34471973 | ||
| MultiQC: summarize analysis results for multiple tools and samples in a single report. | Q34531133 | ||
| Accurate phylogenetic classification of variable-length DNA fragments | Q34593023 | ||
| Direct bacterial identification in positive blood cultures by use of two commercial matrix-assisted laser desorption ionization-time of flight mass spectrometry systems | Q34628895 | ||
| Automatic identification of mixed bacterial species fingerprints in a MALDI-TOF mass-spectrum | Q35085770 | ||
| The influence of incubation time, sample preparation and exposure to oxygen on the quality of the MALDI-TOF MS spectrum of anaerobic bacteria | Q35209319 | ||
| New methods for identifying infectious diseases. | Q35293726 | ||
| MALDI-TOF MS for the diagnosis of infectious diseases | Q35297613 | ||
| Biomarker- and similarity coefficient-based approaches to bacterial mixture characterization using matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS). | Q35832633 | ||
| The bacterial pangenome as a new tool for analysing pathogenic bacteria | Q36004904 | ||
| The genetic integrity of bacterial species: the core genome and the accessory genome, two different stories | Q36210300 | ||
| Draft genome sequences of 21 Salmonella enterica serovar enteritidis strains | Q36362793 | ||
| Fast and sensitive taxonomic classification for metagenomics with Kaiju | Q36804379 | ||
| 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls | Q36878347 | ||
| Large-scale machine learning for metagenomics sequence classification | Q36977290 | ||
| G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery | Q37245572 | ||
| Microbial phylogeny and diversity: small subunit ribosomal RNA sequence analysis and beyond. | Q37707653 | ||
| PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes | Q38342057 | ||
| Integrating alignment-based and alignment-free sequence similarity measures for biological sequence classification | Q38445928 | ||
| Assessment of a fully automated high-throughput DNA extraction method from formalin-fixed, paraffin-embedded tissue for KRAS, and BRAF somatic mutation analysis. | Q46481527 | ||
| Database resources of the National Center for Biotechnology Information | Q56337611 | ||
| P433 | issue | 3 | |
| P921 | main subject | bacterial isolate | Q120897518 |
| P304 | page(s) | 495-505 | |
| P577 | publication date | 2016-12-24 | |
| P1433 | published in | Briefings in Bioinformatics | Q4967031 |
| P1476 | title | Comparing genome versus proteome-based identification of clinical bacterial isolates | |
| P478 | volume | 19 |
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