proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes

scientific article

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/nar/MendeLHLFSB17
P356DOI10.1093/NAR/GKW989
P932PMC publication ID5210662
P698PubMed publication ID28053165

P50authorPeer BorkQ7160367
Simone S LiQ50934821
Ivica LetunicQ28833310
Jaime Huerta-CepasQ30002490
Sofia K. ForslundQ30303509
Daniel R MendeQ37392728
Shinichi SunagawaQ39802571
P2860cites workEcology drives a global network of gene exchange connecting the human microbiome.Q51171065
Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite.Q51533654
Genome-wide experimental determination of barriers to horizontal gene transfer.Q54432519
The species concept for prokaryotesQ55980435
Advanced sequencing technologies and their wider impact in microbiologyQ22065268
The Minimal Gene Complement of Mycoplasma genitaliumQ22065573
Toward Automatic Reconstruction of a Highly Resolved Tree of LifeQ22065877
Whole-genome random sequencing and assembly of Haemophilus influenzae RdQ27860765
The carbohydrate-active enzymes database (CAZy) in 2013Q29617118
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequencesQ30002335
The species concept for prokaryotesQ34127826
Genomic variation landscape of the human gut microbiomeQ34316353
IMG 4 version of the integrated microbial genomes comparative analysis systemQ34380660
PATRIC, the bacterial bioinformatics database and analysis resourceQ34384755
Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecologyQ34760395
Metagenomic species profiling using universal phylogenetic marker genesQ35021237
MetaRef: a pan-genomic database for comparative and community microbial genomicsQ35033956
Update on RefSeq microbial genomes resourcesQ35253461
dbCAN: a web resource for automated carbohydrate-active enzyme annotationQ36088423
KEGG as a reference resource for gene and protein annotationQ36434599
Ensembl Genomes 2016: more genomes, more complexityQ36434816
The comprehensive antibiotic resistance database.Q36969864
Antimicrobial Resistance Prediction in PATRIC and RAST.Q37000598
Microbiology in the post-genomic era.Q37162151
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).Q37661996
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapperQ38434106
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other treesQ39838204
Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suiteQ42238083
PTMcode v2: a resource for functional associations of post-translational modifications within and between proteinsQ43214954
Accurate and universal delineation of prokaryotic speciesQ47918373
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issueD1
P407language of work or nameEnglishQ1860
P304page(s)D529-D534
P577publication date2016-10-24
P1433published inNucleic Acids ResearchQ135122
P1476titleproGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes
P478volume45

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