Histone modifications and dynamic regulation of genome accessibility in plants.

scientific article

Histone modifications and dynamic regulation of genome accessibility in plants. is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.1016/J.PBI.2007.07.013
P932PMC publication ID2140274
P698PubMed publication ID17884714
P5875ResearchGate publication ID5957980

P50authorDoris WagnerQ56670680
P2093author name stringJennifer Pfluger
P2860cites workMethylation patterns of histone H3 Lys 4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutantsQ24814427
High-resolution profiling of histone methylations in the human genomeQ27860906
The role of chromatin during transcriptionQ27860995
Chromatin modifications and their functionQ27861067
The complex language of chromatin regulation during transcriptionQ28131748
Arabidopsis TERMINAL FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWERING LOCUS T to regulate flowering time and several floral homeotic genesQ28182172
Polycomb silencing mechanisms and the management of genomic programmesQ28279277
Genome regulation by polycomb and trithorax proteinsQ28289984
Genomic DNA methylation: the mark and its mediatorsQ28290773
Whole-genome analysis of histone H3 lysine 27 trimethylation in ArabidopsisQ28469184
A chromatin landmark and transcription initiation at most promoters in human cellsQ29547180
The mammalian epigenomeQ29615763
Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.Q33286417
Chromatin modifiers that control plant developmentQ33341886
Chromatin organization and cell fate switch respond to positional information in ArabidopsisQ33341936
MGOUN3: evidence for chromatin-mediated regulation of FLC expressionQ33342697
Molecular genetic studies of the memory of winterQ33343166
Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in ArabidopsisQ33841703
The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancyQ48081222
Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of ArabidopsisQ48081638
Divergent roles of a pair of homologous jumonji/zinc-finger-class transcription factor proteins in the regulation of Arabidopsis flowering time.Q48172446
Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3.Q48211766
Regulation and processing of maize histone deacetylase Hda1 by limited proteolysisQ48234126
The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growthQ49060276
The Arabidopsis LHP1 protein is a component of euchromatin.Q50749634
Establishment of the vernalization-responsive, winter-annual habit in Arabidopsis requires a putative histone H3 methyl transferase.Q50771635
SUPPRESSOR OF FRI 4 encodes a nuclear-localized protein that is required for delayed flowering in winter-annual Arabidopsis.Q50791931
Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36.Q51987073
Arabidopsis homologs of components of the SWR1 complex regulate flowering and plant development.Q51987361
Involvement of the histone acetyltransferase AtHAC1 in the regulation of flowering time via repression of FLOWERING LOCUS C in Arabidopsis.Q51989600
SUPPRESSOR OF FRIGIDA4, encoding a C2H2-Type zinc finger protein, represses flowering by transcriptional activation of Arabidopsis FLOWERING LOCUS C.Q52000403
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.Q53013759
SEF, a new protein required for flowering repression in Arabidopsis, interacts with PIE1 and ARP6Q58433063
Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.ZQ58924948
Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitinationQ59070695
Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expressionQ79330585
Role of plant CBP/p300-like genes in the regulation of flowering timeQ79403792
APETALA1 and SEPALLATA3 interact with SEUSS to mediate transcription repression during flower developmentQ79948691
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferaseQ83043263
Physical and functional interactions of Arabidopsis ADA2 transcriptional coactivator proteins with the acetyltransferase GCN5 and with the cold-induced transcription factor CBF1Q83126355
Histone acetylation affects expression of cellular patterning genes in the Arabidopsis root epidermisQ34063461
Vernalization requires epigenetic silencing of FLC by histone methylationQ34288707
Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant developmentQ34348792
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsisQ34562910
Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominanceQ34653595
Polycomb-group proteins repress the floral activator AGL19 in the FLC-independent vernalization pathwayQ34693937
Different Polycomb group complexes regulate common target genes in Arabidopsis.Q35016232
The Arabidopsis SUVR4 protein is a nucleolar histone methyltransferase with preference for monomethylated H3K9.Q35130578
Epigenetic mechanisms governing seed development in plantsQ35630503
DNA demethylation in the Arabidopsis genome.Q35741567
SKB1-mediated symmetric dimethylation of histone H4R3 controls flowering time in ArabidopsisQ35741779
Roles of dynamic and reversible histone acetylation in plant development and polyploidyQ35946026
The transcription corepressor LEUNIG interacts with the histone deacetylase HDA19 and mediator components MED14 (SWP) and CDK8 (HEN3) to repress transcription.Q35950071
Chromosomal histone modification patterns--from conservation to diversityQ36424924
Methyl-CpG-binding domain proteins in plants: interpreters of DNA methylation.Q36701645
SWI/SNF chromatin remodeling and linker histones in plantsQ36733325
Phosphorylation of histone H3 in plants--a dynamic affair.Q36744697
DNA methylation dynamics in plant genomesQ36753083
Polycomb group and trithorax group proteins in ArabidopsisQ36760769
Vernalization: a model for investigating epigenetics and eukaryotic gene regulation in plants.Q36769552
Rules and regulation in the primary structure of chromatinQ36805041
Plant SET domain-containing proteins: structure, function and regulationQ36826687
Epigenetic inheritance in plants.Q36830697
Unwinding chromatin for development and growth: a few genes at a time.Q36848737
Transcriptional repression of target genes by LEUNIG and SEUSS, two interacting regulatory proteins for Arabidopsis flower development.Q37388945
The Arabidopsis heterochromatin protein1 homolog (TERMINAL FLOWER2) silences genes within the euchromatic region but not genes positioned in heterochromatin.Q38321585
Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27.Q38364272
Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesQ39478322
Identification of AtHD2C as a novel regulator of abscisic acid responses in ArabidopsisQ39484315
The bromodomain protein GTE6 controls leaf development in Arabidopsis by histone acetylation at ASYMMETRIC LEAVES1.Q41896186
TOPLESS regulates apical embryonic fate in ArabidopsisQ42496617
Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana.Q44258646
HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in ArabidopsisQ44908944
Ordered histone modifications are associated with transcriptional poising and activation of the phaseolin promoterQ46834939
Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1.Q47636564
Mutations in the Type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis.Q48078774
A chromatin link that couples cell division to root epidermis patterning in Arabidopsis.Q48080016
P433issue6
P304page(s)645-652
P577publication date2007-09-19
P1433published inCurrent Opinion in Plant BiologyQ15756095
P1476titleHistone modifications and dynamic regulation of genome accessibility in plants
P478volume10

Reverse relations

cites work (P2860)
Q43677442A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue
Q51062771ANTI-SILENCING FUNCTION1 proteins are involved in ultraviolet-induced DNA damage repair and are cell cycle regulated by E2F transcription factors in Arabidopsis.
Q64087763AP2/ERF Transcription Factor Regulatory Networks in Hormone and Abiotic Stress Responses in
Q85847126Alterations of histone modifications at the senescence-associated gene HvS40 in barley during senescence
Q34054978Arabidopsis Histone Lysine Methyltransferases
Q33719427Autoimmunity in Arabidopsis acd11 is mediated by epigenetic regulation of an immune receptor
Q40589919Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture
Q38346030Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).
Q36452236Circadian clock regulates dynamic chromatin modifications associated with Arabidopsis CCA1/LHY and TOC1 transcriptional rhythms.
Q39113151Circadian expression profiles of chromatin remodeling factor genes in Arabidopsis
Q28748730Cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic States in Arabidopsis
Q41486243Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
Q37240736DDM1 and ROS1 have a role in UV-B induced- and oxidative DNA damage in A. thaliana.
Q41771154Developmental and environmental signals induce distinct histone acetylation profiles on distal and proximal promoter elements of the C4-Pepc gene in maize
Q39529456Diurnal changes in the histone H3 signature H3K9ac|H3K27ac|H3S28p are associated with diurnal gene expression in Arabidopsis
Q33348448Dynamics of DNA methylation and Histone H4 acetylation during floral bud differentiation in azalea
Q37606205Endometriosis is characterized by a distinct pattern of histone 3 and histone 4 lysine modifications.
Q37771423Epigenetic control of plant immunity.
Q38200598Epigenetic control of plant senescence and linked processes
Q33905450Epigenetic profiling of heterochromatic satellite DNA.
Q26823692Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation
Q43698907Expression of vernalization responsive genes in wheat is associated with histone H3 trimethylation
Q51418267GCN5 contributes to stem cuticular wax biosynthesis by histone acetylation of CER3 in Arabidopsis.
Q38879634Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation
Q37346873Genome-wide analysis of histone modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica
Q64064273Genome-wide analysis of three histone marks and gene expression in Paulownia fortunei with phytoplasma infection
Q92786450Genome-wide identification of histone methylation (H3K9me2) and acetylation (H4K12ac) marks in two ecotypes of switchgrass (Panicum virgatum L.).
Q35588273Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem
Q43200920Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression
Q26825443Genomic basis for light control of plant development
Q41021045HAG3, a Histone Acetyltransferase, Affects UV-B Responses by Negatively Regulating the Expression of DNA Repair Enzymes and Sunscreen Content in Arabidopsis thaliana
Q44578954HISTONE DEACETYLASE19 interacts with HSL1 and participates in the repression of seed maturation genes in Arabidopsis seedlings
Q38991574Heritable Effect of Plant Water Availability Conditions on Restoration of Male Fertility in the "9E" CMS-Inducing Cytoplasm of Sorghum
Q33363172Histone H3 Dynamics Reveal Domains with Distinct Proliferation Potential in the Arabidopsis Root.
Q34380518Histone acetyltransferases in rice (Oryza sativa L.): phylogenetic analysis, subcellular localization and expression
Q34612515Histone modifications associated with drought tolerance in the desert plant Zygophyllum dumosum Boiss
Q41886854Histone modifications do not play a major role in salicylate-mediated suppression of jasmonate-induced PDF1.2 gene expression
Q98945033Identification and characterization of SET domain family genes in bread wheat (Triticum aestivum L.).
Q37737967Impact of nucleosome dynamics and histone modifications on cell proliferation during Arabidopsis development
Q33520095In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana
Q33794308Integrated analysis and transcript abundance modelling of H3K4me3 and H3K27me3 in developing secondary xylem.
Q64061962Interactive roles of chromatin regulation and circadian clock function in plants
Q35863331JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators
Q37291440Knockdown of WHIRLY1 Affects Drought Stress-Induced Leaf Senescence and Histone Modifications of the Senescence-Associated Gene HvS40
Q33668103MOM1 and Pol-IV/V interactions regulate the intensity and specificity of transcriptional gene silencing
Q36905674Maize lines expressing RNAi to chromatin remodeling factors are similarly hypersensitive to UV-B radiation but exhibit distinct transcriptome responses
Q36677178Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis
Q38202466Molecular Functions of Long Non-Coding RNAs in Plants
Q38183656Multiple layers of posttranslational regulation refine circadian clock activity in Arabidopsis
Q38142108New clues in the nucleus: transcriptional reprogramming in effector-triggered immunity.
Q28710122Ordered changes in histone modifications at the core of the Arabidopsis circadian clock
Q36818735P1 Epigenetic Regulation in Leaves of High Altitude Maize Landraces: Effect of UV-B Radiation.
Q48199872PIF1-Interacting Transcription Factors and Their Binding Sequence Elements Determine the in Vivo Targeting Sites of PIF1.
Q63000657Participation of chromatin-remodeling proteins in the repair of ultraviolet-B-damaged DNA
Q49539596Plant Deubiquitinases and Their Role in the Control of Gene Expression Through Modification of Histones
Q59789362Proteasomal degradation of BRAHMA promotes Boron tolerance in Arabidopsis
Q35909584Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum).
Q38821202Put your 3D glasses on: plant chromatin is on show.
Q83402942Rapid and reversible light-mediated chromatin modifications of Arabidopsis phytochrome A locus
Q35630571Regulation by polycomb and trithorax group proteins in Arabidopsis.
Q33404443Sequence mining and transcript profiling to explore cyst nematode parasitism
Q39393201Structural disorder in plant proteins: where plasticity meets sessility
Q51523450Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
Q33354810The 5-methyl-deoxy-cytidine (5mdC) localization to reveal in situ the dynamics of DNA methylation chromatin pattern in a variety of plant organ and tissue cells during development
Q64886163The Four FAD-Dependent Histone Demethylases of Arabidopsis Are Differently Involved in the Control of Flowering Time.
Q49066861The Histone Deacetylase Complex 1 Protein of Arabidopsis Has the Capacity to Interact with Multiple Proteins Including Histone 3-Binding Proteins and Histone 1 Variants.
Q59792466The Plant Circadian Clock and Chromatin Modifications
Q55327645The Rice Rolled Fine Striped (RFS) CHD3/Mi-2 Chromatin Remodeling Factor Epigenetically Regulates Genes Involved in Oxidative Stress Responses During Leaf Development.
Q37457947The SAND domain protein ULTRAPETALA1 acts as a trithorax group factor to regulate cell fate in plants
Q51034745The dynamics of histone H3 modifications is species-specific in plant meiosis.
Q33347883The histone acetyltransferase GCN5 affects the inflorescence meristem and stamen development in Arabidopsis
Q88917357The histone acetyltransferase GCN5 and the transcriptional coactivator ADA2b affect leaf development and trichome morphogenesis in Arabidopsis
Q35928722Transcriptional profiling of epigenetic regulators in somatic embryos during temperature induced formation of an epigenetic memory in Norway spruce.
Q51847610Transcriptional regulation of Arabidopsis LEAFY COTYLEDON2 involves RLE, a cis-element that regulates trimethylation of histone H3 at lysine-27.
Q35178183Transgenerational epigenetic inheritance in plants
Q39136865Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana.
Q57111165Trichostatin A Triggers an Embryogenic Transition in Arabidopsis Explants via an Auxin-Related Pathway
Q43229689Unstable RNAi effects through epigenetic silencing of an inverted repeat transgene in Chlamydomonas reinhardtii
Q41910496Variation of metabolic profiles in developing maize kernels up- and down-regulated for the hda101 gene

Search more.