CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model

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CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model is …
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scholarly articleQ13442814

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P356DOI10.1016/J.BPJ.2015.10.008
P932PMC publication ID4656882
P698PubMed publication ID26588561

P50authorTaras PogorelovQ42653003
Wonpil ImQ63854235
P2093author name stringXi Cheng
Yifei Qi
Jeffery B Klauda
Emad Tajkhorshid
Jumin Lee
Soohyung Park
Josh V Vermaas
P2860cites workThe Protein Data BankQ24515306
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Membrane structure of protein kinase C and calmodulin binding domain of myristoylated alanine rich C kinase substrate determined by site-directed spin labelingQ30468179
Lateral diffusion rates of lipid, water, and a hydrophobic drug in a multilamellar liposome.Q33188304
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Conformational heterogeneity of α-synuclein in membraneQ34325107
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Anticancer β-hairpin peptides: membrane-induced folding triggers activityQ35884187
Accelerating membrane insertion of peripheral proteins with a novel membrane mimetic model.Q35926185
CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues.Q36539936
Bending free energy from simulation: correspondence of planar and inverse hexagonal lipid phasesQ36864545
Characterizing the membrane-bound state of cytochrome P450 3A4: structure, depth of insertion, and orientationQ36928692
CHARMM-GUI Membrane Builder for mixed bilayers and its application to yeast membranesQ37263413
Capturing Spontaneous Membrane Insertion of the Influenza Virus Hemagglutinin Fusion PeptideQ37292440
A microscopic view of phospholipid insertion into biological membranesQ37600510
Partitioning of amino acids into a model membrane: capturing the interfaceQ37697344
Advanced replica-exchange sampling to study the flexibility and plasticity of peptides and proteinsQ38072502
CHARMM-GUI PACE CG Builder for solution, micelle, and bilayer coarse-grained simulationsQ38739708
Surface-Tension Replica-Exchange Molecular Dynamics Method for Enhanced Sampling of Biological Membrane Systems.Q40291808
Conformational properties of alpha-synuclein in its free and lipid-associated statesQ43564642
Lateral sequestration of phosphatidylinositol 4,5-bisphosphate by the basic effector domain of myristoylated alanine-rich C kinase substrate is due to nonspecific electrostatic interactionsQ44049943
Molecular dynamics simulation of dipalmitoylphosphatidylcholine modified with a MTSL nitroxide spin label in a lipid membraneQ45284903
Accelerated molecular dynamics: a promising and efficient simulation method for biomoleculesQ46058456
Distinct structural and adhesive roles of Ca2+ in membrane binding of blood coagulation factorsQ46815911
Molecular model of hemoglobin N from Mycobacterium tuberculosis bound to lipid bilayers: a combined spectroscopic and computational study.Q51654751
Membrane binding of peptides containing both basic and aromatic residues. Experimental studies with peptides corresponding to the scaffolding region of caveolin and the effector region of MARCKS.Q52074937
Translational diffusion of lipids in liquid crystalline phase phosphatidylcholine multibilayers. A comparison of experiment with theory.Q52677262
Update of the cholesterol force field parameters in CHARMM.Q53395896
The Effector Domain of Myristoylated Alanine-rich C Kinase Substrate Binds Strongly to Phosphatidylinositol 4,5-BisphosphateQ57371944
Phosphorylation-dependent binding of a synthetic MARCKS peptide to calmodulinQ70114284
CHARMM-GUI: a web-based graphical user interface for CHARMMQ80900573
Methodological problems in pressure profile calculations for lipid bilayersQ81660514
Membrane-binding mechanism of a peripheral membrane protein through microsecond molecular dynamics simulationsQ84878555
P433issue10
P407language of work or nameEnglishQ1860
P921main subjectCHARMMQ902642
P304page(s)2012-2022
P577publication date2015-11-01
P1433published inBiophysical JournalQ2032955
P1476titleCHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model
P478volume109

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