DNA arms do the legwork to ensure the directionality of lambda site-specific recombination

scientific article

DNA arms do the legwork to ensure the directionality of lambda site-specific recombination is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1016/J.SBI.2005.12.003
P8608Fatcat IDrelease_6l6pd7lknvav5onxrssti5osj4
P932PMC publication ID1892226
P698PubMed publication ID16368232
P5875ResearchGate publication ID7403095

P50authorMarta Radman-LivajaQ63101483
P2093author name stringHideki Aihara
Tapan Biswas
Tom Ellenberger
Arthur Landy
P2860cites workIntegrative recombination of bacteriophage lambda DNA in vitroQ24564594
Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swappingQ27628643
Arm-site binding by lambda -integrase: solution structure and functional characterization of its amino-terminal domainQ27638420
A conformational switch controls the DNA cleavage activity of lambda integraseQ27641749
Flexibility in DNA recombination: structure of the lambda integrase catalytic coreQ27735010
A structural view of cre-loxp site-specific recombinationQ28187547
Reversible inhibitors of lambda integrase-mediated recombination efficiently trap Holliday junction intermediates and form the basis of a novel assay for junction resolutionQ33195148
Architecture of recombination intermediates visualized by in-gel FRET of lambda integrase-Holliday junction-arm DNA complexesQ33932677
Similarities and differences among 105 members of the Int family of site-specific recombinasesQ34652687
New insight into site-specific recombination from Flp recombinase-DNA structuresQ35070915
Identification of the lambda integrase surface that interacts with Xis reveals a residue that is also critical for Int dimer formationQ35167534
Mutations in the amino-terminal domain of lambda-integrase have differential effects on integrative and excisive recombinationQ35659504
A structural basis for allosteric control of DNA recombination by lambda integrase.Q35662136
An intermediate in the phage lambda site-specific recombination reaction is revealed by phosphorothioate substitution in DNA.Q36058994
Dramatic changes in Fis levels upon nutrient upshift in Escherichia coliQ36137894
Efficient excision of phage lambda from the Escherichia coli chromosome requires the Fis proteinQ36147986
Multiple effects of Fis on integration and the control of lysogeny in phage lambdaQ36148023
Mutations in an integration host factor-binding site: effect on lambda site-specific recombination and regulatory implicationsQ36262602
Bacteriophage lambda int protein recognizes two classes of sequence in the phage att site: characterization of arm-type sitesQ36326589
Site-specific recombination functions of bacteriophage lambda: DNA sequence of regulatory regions and overlapping structural genes for Int and XisQ36387160
Patterns of lambda Int recognition in the regions of strand exchangeQ36398220
Two structural features of lambda integrase that are critical for DNA cleavage by multimers but not by monomersQ36852106
The small DNA binding domain of lambda integrase is a context-sensitive modulator of recombinase functionsQ38303603
Arm sequences contribute to the architecture and catalytic function of a lambda integrase-Holliday junction complex.Q38356123
Regulation of site-specific recombination by the C-terminus of lambda integraseQ39689772
FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditionsQ39934971
Transposition and site-specific recombination: adapting DNA cut-and-paste mechanisms to a variety of genetic rearrangementsQ41625243
Control of directionality in lambda site specific recombinationQ41853516
Receipt of the C-terminal tail from a neighboring lambda Int protomer allosterically stimulates Holliday junction resolution.Q42025553
DNA looping generated by DNA bending protein IHF and the two domains of lambda integraseQ42746439
Synapsis of attachment sites during lambda integrative recombination involves capture of a naked DNA by a protein-DNA complexQ43707566
Autonomous DNA binding domains of lambda integrase recognize two different sequence familiesQ43922332
Attenuating functions of the C terminus of lambda integraseQ44235309
Dynamics and DNA substrate recognition by the catalytic domain of lambda integraseQ44454710
Bacteriophage lambda site-specific recombination proceeds with a defined order of strand exchangesQ44615336
The efficiency of mispaired ligations by lambda integrase is extremely sensitive to contextQ45056842
Mapping the functional domains of bacteriophage lambda integrase proteinQ45246560
Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway.Q54761410
DNA cleavage in trans by the active site tyrosine during Flp recombination: Switching protein partners before exchanging strandsQ58923847
Role of the Xis protein of bacteriophage λ in a specific reactive complex at the attR prophage attachment siteQ67265299
Suicide recombination substrates yield covalent lambda integrase-DNA complexes and lead to identification of the active site tyrosineQ69827589
Protein-protein interactions in a higher-order structure direct lambda site-specific recombinationQ70038391
Site-specific recombination intermediates trapped with suicide substratesQ70191117
Purification of the bacteriophage lambda xis gene product required for lambda excisive recombinationQ72762701
Site-specific recombination Xis-independent excisive recombination of bacteriophage lambdaQ72927067
Dissection of bacteriophage lambda site-specific recombination using synthetic peptide combinatorial librariesQ73938184
The molecular basis of co‐operative DNA binding between lambda integrase and excisionaseQ79079892
Non-equivalent interactions between amino-terminal domains of neighboring lambda integrase protomers direct Holliday junction resolutionQ81101451
P433issue1
P304page(s)42-50
P577publication date2005-12-20
P1433published inCurrent Opinion in Structural BiologyQ15758416
P1476titleDNA arms do the legwork to ensure the directionality of lambda site-specific recombination
P478volume16

Reverse relations

cites work (P2860)
Q38456971A biotin interference assay highlights two different asymmetric interaction profiles for lambda integrase arm-type binding sites in integrative versus excisive recombination
Q36970474A new large-DNA-fragment delivery system based on integrase activity from an integrative and conjugative element
Q34119420A single copy integration vector that integrates at an engineered site on the Staphylococcus aureus chromosome
Q54364562Arm site independence of coliphage HK022 integrase in human cells.
Q41982411CTnDOT integrase interactions with attachment site DNA and control of directionality of the recombination reaction
Q42874904Characterization of the site-specific recombination system of phage ΦD145, and its capacity to promote recombination in human cells
Q33760262Control of directionality in the DNA strand-exchange reaction catalysed by the tyrosine recombinase TnpI.
Q27650784Crystallization and structure determination of the core-binding domain of bacteriophage lambda integrase
Q42123918DNA supercoiling and the Lrp protein determine the directionality of fim switch DNA inversion in Escherichia coli K-12.
Q38177172Genetic surgery in fungi: employing site-specific recombinases for genome manipulation.
Q53585292IHF-dependent activation of P1 plasmid origin by dnaA.
Q42566662Mechanical constraints on Hin subunit rotation imposed by the Fis/enhancer system and DNA supercoiling during site-specific recombination
Q50238026Molecular Cloning Designer Simulator (MCDS): All-in-one molecular cloning and genetic engineering design, simulation and management software for complex synthetic biology and metabolic engineering projects.
Q53570382P1 partition complex assembly involves several modes of protein-DNA recognition.
Q38431674Protein binding sites involved in the assembly of the KplE1 prophage intasome.
Q37080351Real-time single-molecule tethered particle motion analysis reveals mechanistic similarities and contrasts of Flp site-specific recombinase with Cre and λ Int
Q39373397Selection of bacteriophage lambda integrases with altered recombination specificity by in vitro compartmentalization.
Q42734908Sequences in attB that affect the ability of phiC31 integrase to synapse and to activate DNA cleavage
Q42122672Spermidine biases the resolution of Holliday junctions by phage lambda integrase
Q43587970TG1 integrase-based system for site-specific gene integration into bacterial genomes
Q33777418The CTCF insulator protein forms an unusual DNA structure
Q37810595Topoisomerases and site-specific recombinases: similarities in structure and mechanism

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