Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs

scientific article

Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1186/S12864-015-2261-2
P932PMC publication ID4672498
P698PubMed publication ID26644001
P5875ResearchGate publication ID286412855

P50authorGary B HuffnagleQ89273784
P2093author name stringJohn J LiPuma
Brittan S Scales
John R Erb-Downward
Ian M Huffnagle
P2860cites workThe RAST Server: rapid annotations using subsystems technologyQ21263157
The COG database: an updated version includes eukaryotesQ21284294
Comparison of the genomes of two Xanthomonas pathogens with differing host specificitiesQ22122346
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transformQ24540347
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
Basic local alignment search toolQ25938991
Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humansQ27011525
A metallothionein containing a zinc finger within a four-metal cluster protects a bacterium from zinc toxicityQ27633997
Structural Basis of DNA Recognition by the Alternative Sigma-factor, σ54Q27644709
Pfit Is a Structurally Novel Crohn's Disease-Associated SuperantigenQ27681161
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityQ27860817
A genomic perspective on protein familiesQ27860913
Adaptation of Pseudomonas fluorescens to the plant rhizosphereQ28201471
Pseudomonas aeruginosa: all roads lead to resistanceQ28240246
Membrane traffic wardens and protein secretion in gram-negative bacteriaQ28266467
Phylogenetic Analysis of Aquaspirillum magnetotacticum Using Polymerase Chain Reaction-Amplified 16S rRNA-Specific DNAQ28283516
A novel type II secretion system in Pseudomonas aeruginosaQ28492615
CzcR-CzcS, a two-component system involved in heavy metal and carbapenem resistance in Pseudomonas aeruginosaQ28493033
A copper-activated two-component system interacts with zinc and imipenem resistance in Pseudomonas aeruginosaQ28493165
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matchesQ28751717
Mauve: multiple alignment of conserved genomic sequence with rearrangementsQ29547292
Type IV pili and twitching motilityQ29615262
Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environmentQ29615283
Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysisQ29615284
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotesQ29616745
DNA-DNA hybridization values and their relationship to whole-genome sequence similaritiesQ29617100
Efflux-mediated heavy metal resistance in prokaryotesQ30320564
VasH is a transcriptional regulator of the type VI secretion system functional in endemic and pandemic Vibrio choleraeQ30407471
From the environment to the host: re-wiring of the transcriptome of Pseudomonas aeruginosa from 22°C to 37°C.Q30414702
BLAST and FASTA similarity searching for multiple sequence alignmentQ30457096
The reach of the genome signature in prokaryotesQ33260372
Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?Q33417905
Cell-associated hemolysis activity in the clinical strain of Pseudomonas fluorescens MFN1032.Q33563332
Changes in the lung microbiome following lung transplantation include the emergence of two distinct Pseudomonas species with distinct clinical associationsQ33617931
The clinical Pseudomonas fluorescens MFN1032 strain exerts a cytotoxic effect on epithelial intestinal cells and induces Interleukin-8 via the AP-1 signaling pathwayQ33653666
Spatial patterns in antibiotic resistance among stream bacteria: effects of industrial pollutionQ33987548
Type II secretion and pathogenesisQ34007492
Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactionsQ34032781
Pseudomonas fluorescens encodes the Crohn's disease-associated I2 sequence and T-cell superantigenQ34259452
Virulence of the Pseudomonas fluorescens clinical strain MFN1032 towards Dictyostelium discoideum and macrophages in relation with type III secretion system.Q34424116
Type II secretion: a protein secretion system for all seasonsQ34458508
Protein secretion systems and adhesins: the molecular armory of Gram-negative pathogensQ34625770
GC-Profile: a web-based tool for visualizing and analyzing the variation of GC content in genomic sequencesQ34974317
Protein secretion systems of Pseudomonas aeruginosa and P fluorescensQ35093064
Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteinsQ35095871
Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosaQ35168460
Type II protein secretion and its relationship to bacterial type IV pili and archaeal flagellaQ35576644
Genome sequence of the biocontrol strain Pseudomonas fluorescens F113.Q35805967
Bacterial iron sources: from siderophores to hemophoresQ35919884
Specificity of pyoverdine-mediated iron uptake among fluorescent Pseudomonas strainsQ36219625
Gene cluster of Pseudomonas syringae pv. "phaseolicola" controls pathogenicity of bean plants and hypersensitivity of nonhost plantsQ36259921
Molecular characterization of a functional type VI secretion system from a clinical isolate of Aeromonas hydrophilaQ36724845
Type IV pili: paradoxes in form and functionQ36742465
The tad locus: postcards from the widespread colonization islandQ36792557
Sigma factors in Pseudomonas aeruginosaQ37028271
The genome of Pseudomonas fluorescens strain R124 demonstrates phenotypic adaptation to the mineral environmentQ37253161
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescensQ37282936
Reordering contigs of draft genomes using the Mauve alignerQ37295104
GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysisQ37335570
Iron uptake regulation in Pseudomonas aeruginosaQ37364577
Copper resistance in Pseudomonas syringae mediated by periplasmic and outer membrane proteinsQ37603756
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).Q37661996
Type VI secretion regulation: crosstalk and intracellular communicationQ37802706
Thermal control of microbial development and virulence: molecular mechanisms of microbial temperature sensing.Q38049144
Bacterial multidrug efflux transportersQ38202140
Molecular mechanisms of fluoroquinolone resistance in Pseudomonas aeruginosa isolates from cystic fibrosis patientsQ39473195
Effect of temperature on the shift of Pseudomonas fluorescens from an environmental microorganism to a potential human pathogenQ39717148
The cobalt, zinc, and cadmium efflux system CzcABC from Alcaligenes eutrophus functions as a cation-proton antiporter in Escherichia coliQ39836713
Role of the novel OprD family of porins in nutrient uptake in Pseudomonas aeruginosaQ40724078
Association of overexpression of efflux pump genes with antibiotic resistance in Pseudomonas aeruginosa strains clinically isolated from urinary tract infection patientsQ41104946
Pseudomonas fluorescens alters epithelial permeability and translocates across Caco-2/TC7 intestinal cellsQ41166000
Elevated microbial tolerance to metals and antibiotics in metal-contaminated industrial environmentsQ43322988
Identification of a novel Gsp-related pathway required for secretion of the manganese-oxidizing factor of Pseudomonas putida strain GB-1.Q44311796
DNA sequence-based analysis of the Pseudomonas speciesQ44668861
Comparative study of 7 fluorescent pseudomonad clinical isolatesQ45062635
Phenotypic variation in the Pseudomonas fluorescens clinical strain MFN1032.Q46028500
Chromosomal mechanisms of aminoglycoside resistance in Pseudomonas aeruginosa isolates from cystic fibrosis patientsQ46156632
Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant rootsQ46867824
Identification of a gene cluster, czr, involved in cadmium and zinc resistance in Pseudomonas aeruginosaQ47908809
Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25.Q48343337
Development of antibiotic resistance in Pseudomonas aeruginosa during two decades of antipseudomonal treatment at the Danish CF Center.Q50557315
Environmental and clinical isolates of Pseudomonas aeruginosa show pathogenic and biodegradative properties irrespective of their origin.Q54021225
The Effect of Longterm Exposure to Mercury on the Bacterial Community in Marine SedimentQ63761795
The underlying mechanisms of type II protein secretionQ64449375
The Widespread Colonization Island of Actinobacillus actinomycetemcomitansQ64449438
Energetics and topology of CzcA, a cation/proton antiporter of the resistance-nodulation-cell division protein familyQ78207940
The type III secretion system of biocontrol Pseudomonas fluorescens KD targets the phytopathogenic Chromista Pythium ultimum and promotes cucumber protectionQ81226595
Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncoveredQ83808575
P407language of work or nameEnglishQ1860
P921main subjectPseudomonas fluorescensQ135292
comparative genomicsQ1147112
P304page(s)1032
P577publication date2015-12-07
P1433published inBMC GenomicsQ15765854
P1476titleComparative genomics of Pseudomonas fluorescens subclade III strains from human lungs
P478volume16

Reverse relations

cites work (P2860)
Q37589111Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.
Q47131513Draft Genome Sequence of Pseudomonas fluorescens Strain TR3, a Potential Biocontrol Agent against the Rice Blast Fungus Magnaporthe oryzae
Q111742015Pseudomonas germanica sp. nov., isolated from Iris germanica rhizomes
Q51145543The oral microbiota - a mechanistic role for systemic diseases.

Search more.