A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.).

scientific article published on 25 April 2017

A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.3389/FPLS.2017.00542
P932PMC publication ID5404241
P698PubMed publication ID28487704

P50authorRajeev Kumar VarshneyQ7285945
Petr SmýkalQ57246275
Aleš SoukupQ57252298
Petr BednářQ59709002
Anna JanskáQ61902000
P2093author name stringPeter Winter
Björn Rotter
Nicolas Krezdorn
Oldřich Trněný
Pavel Hanáček
Iveta Hradilová
Markéta Válková
Monika Cechová
Khan Aamir
Lenka Prokešová
P2860cites workInheritance and mapping of seed lipoxygenase polypeptides in PisumQ86740077
Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic mapQ86754925
MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatulaQ88118655
Seed dormancy and germination-emerging mechanisms and new hypothesesQ21129202
Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform ExtractionQ25938986
Physical, metabolic and developmental functions of the seed coatQ26809964
The role of the testa during development and in establishment of dormancy of the legume seedQ26829654
Patterns of genomic changes with crop domestication and breedingQ27026965
Reactive Oxygen Species (ROS): Beneficial Companions of Plants' Developmental ProcessesQ28073165
Role of anthocyanidin reductase, encoded by BANYULS in plant flavonoid biosynthesisQ28203640
Anthocyanidin reductases from Medicago truncatula and Arabidopsis thalianaQ28238906
A bountiful harvest: genomic insights into crop domestication phenotypesQ28286448
Evolution of crop species: genetics of domestication and diversificationQ28302080
De novo characterization of fall dormant and nondormant alfalfa (Medicago sativa L.) leaf transcriptome and identification of candidate genes related to fall dormancyQ28544913
Seed shattering: from models to cropsQ28648006
Convergent evolution and parallelism in plant domestication revealed by an expanding archaeological recordQ28659191
RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptomeQ28743618
A class II KNOX gene, KNOX4, controls seed physical dormancyQ28828810
A classification system for seed dormancyQ29301423
Seed dormancy and the control of germinationQ29840869
Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this speciesQ30988819
Role of seed coat in imbibing soybean seeds observed by micro-magnetic resonance imagingQ31159849
DEGseq: an R package for identifying differentially expressed genes from RNA-seq dataQ33512293
Membrane-type matrix metalloproteinasesQ33586502
RNA-Seq profiling of a defective seed coat mutation in Glycine max reveals differential expression of proline-rich and other cell wall protein transcriptsQ33609987
Identification of phenylpropanoid biosynthetic genes and phenylpropanoid accumulation by transcriptome analysis of Lycium chinenseQ33715598
Identification of Mendel's white flower characterQ33719190
Gene ontology analysis for RNA-seq: accounting for selection biasQ33861598
Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencingQ33898632
FastPCR software for PCR, in silico PCR, and oligonucleotide assembly and analysis.Q34039523
Comparative transcriptome analysis of aerial and subterranean pods development provides insights into seed abortion in peanutQ34125037
JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing dataQ34143680
Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markersQ34203712
Characterization of proanthocyanidin metabolism in pea (Pisum sativum) seedsQ34244745
Construction of a genetic linkage map and genetic analysis of domestication related traits in mungbean (Vigna radiata)Q34372455
The evolution of apical dominance in maizeQ34420502
Global transcriptome analysis of developing chickpea (Cicer arietinum L.) seedsQ34708097
Molecular basis of a shattering resistance boosting global dissemination of soybeanQ34752095
The nature of selection during plant domesticationQ34943565
Molecular mechanisms involved in convergent crop domesticationQ34987098
Experimental growing of wild pea in Israel and its bearing on Near Eastern plant domesticationQ35003844
Transcriptome-wide mapping of pea seed ageing reveals a pivotal role for genes related to oxidative stress and programmed cell deathQ35036453
Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea.Q35093136
A Single-Nucleotide Polymorphism in an Endo-1,4-β-Glucanase Gene Controls Seed Coat Permeability in SoybeanQ35651047
Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysisQ35688445
A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpeaQ35709630
Translational Genomics in Legumes Allowed Placing In Silico 5460 Unigenes on the Pea Functional Map and Identified Candidate Genes in Pisum sativum L.Q35746720
De novo assembly and characterisation of the field pea transcriptome using RNA-SeqQ35746818
SHATTERPROOF MADS-box genes control seed dispersal in ArabidopsisQ41732644
Negative regulation of the SHATTERPROOF genes by FRUITFULL during Arabidopsis fruit developmentQ41748896
Structure and development of Medicago truncatula pod wall and seed coatQ41825240
Involvement of three putative glucosyltransferases from the UGT72 family in flavonol glucoside/rhamnoside biosynthesis in Lotus japonicus seedsQ41841061
Genetic changes accompanying the domestication of Pisum sativum: is there a common genetic basis to the 'domestication syndrome' for legumes?Q42234280
INDEHISCENT and SPATULA interact to specify carpel and valve margin tissue and thus promote seed dispersal in Arabidopsis.Q42619862
A combined histology and transcriptome analysis unravels novel questions on Medicago truncatula seed coat.Q42661227
A reference genome for common bean and genome-wide analysis of dual domesticationsQ42664823
Antioxidant activity of a red lentil extract and its fractions.Q42943036
Variability in the distribution of phenolic compounds in milled fractions of chickpea and horse gram: evaluation of their antioxidant propertiesQ42996087
Cracks in the palisade cuticle of soybean seed coats correlate with their permeability to waterQ43027102
Properties of the soybean seed coat cuticle change during development.Q43148744
Liquid chromatography/high resolution tandem mass spectrometry - Tool for the study of polyphenol profile changes during micro-scale biogas digestion of grape marcsQ43355086
The B gene of pea encodes a defective flavonoid 3',5'-hydroxylase, and confers pink flower color.Q43434254
Tissue-specific gene silencing mediated by a naturally occurring chalcone synthase gene cluster in Glycine max.Q44830247
Polyphenol oxidase activity and differential accumulation of polyphenolics in seed coats of pinto bean (Phaseolus vulgaris L.) characterize postharvest color changesQ46455299
Comparison of two GM maize varieties with a near-isogenic non-GM variety using transcriptomics, proteomics and metabolomicsQ46589828
Control of fruit patterning in Arabidopsis by INDEHISCENT.Q46842049
An SNP caused loss of seed shattering during rice domesticationQ47211942
Pod shattering resistance associated with domestication is mediated by a NAC gene in soybeanQ47669345
Regulation of anthocyanin and proanthocyanidin biosynthesis by Medicago truncatula bHLH transcription factor MtTT8.Q47889350
Purification and Developmental Analysis of the Major Anionic Peroxidase from the Seed Coat of Glycine max.Q47919869
Phenolics in the Seed Coat of Wild Soybean (Glycine soja) and Their Significance for Seed Hardness and Seed GerminationQ51152740
Geometry and mechanics in the opening of chiral seed pods.Q51529836
Integrative transcript and metabolite analysis of nutritionally enhanced DE-ETIOLATED1 downregulated tomato fruit.Q51909302
NAC transcription factors NST1 and NST3 regulate pod shattering in a partially redundant manner by promoting secondary wall formation after the establishment of tissue identity.Q51951925
A gene expression atlas of the model legume Medicago truncatula.Q51959632
Das DomestikationssyndromQ56135391
Orthogonal projections to latent structures (O-PLS)Q56435041
Study of soybean seed coat components and their relationship to water absorptionQ57145317
Seed Dispersal and Crop Domestication: Shattering, Germination and Seasonality in Evolution under CultivationQ57745432
Establishment of theLotus japonicusGene Expression Atlas (LjGEA) and its use to explore legume seed maturationQ58001659
Update on transparent testa mutants from Arabidopsis thaliana: characterisation of new alleles from an isogenic collectionQ58480624
A Combined Proteome and Transcriptome Analysis of DevelopingMedicago truncatulaSeedsQ62024295
Influence of the testa on seed dormancy, germination, and longevity in ArabidopsisQ73454790
Seed Germination and DormancyQ74801386
Genetic analysis of pod dehiscence in pea (Pisum sativum L.).Q78367663
Patterns and kinetics of water uptake by soybean seedsQ79448133
The outermost cuticle of soybean seeds: chemical composition and function during imbibitionQ79546195
The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of ArabidopsisQ79677903
Permeability of seed coats to water as related to drying conditions and metabolism of phenolicsQ83248575
Inheritance and genetic mapping of two nuclear genes involved in nuclear-cytoplasmic incompatibility in peas (Pisum sativum L.).Q83409039
Essential methods of plant sample preparation for light microscopyQ86542330
Selected simple methods of plant cell wall histochemistry and staining for light microscopyQ86542333
Construction of a Genetic Linkage Map and Identification of QTLs for Seed Weight and Seed Size Traits in Lentil (Lens culinaris Medik.).Q35799045
Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivarsQ35805180
A bulk segregant transcriptome analysis reveals metabolic and cellular processes associated with Orange allelic variation and fruit β-carotene accumulation in melon fruitQ35836623
Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryosQ35842693
Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines.Q35871890
The genetics of domestication of yardlong bean, Vigna unguiculata (L.) Walp. ssp. unguiculata cv.-gr. sesquipedalisQ35913599
Errors in RNA-Seq quantification affect genes of relevance to human diseaseQ36023606
Proanthocyanidins--a final frontier in flavonoid research?Q36048741
Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan)Q36167888
Neglecting legumes has compromised human health and sustainable food productionQ36285987
Comparative Transcriptomic Analyses of Vegetable and Grain Pea (Pisum sativum L.) Seed DevelopmentQ36316238
De Novo Assembly of the Pea (Pisum sativum L.) Nodule Transcriptome.Q36353097
Genetics and biochemistry of seed flavonoidsQ36466529
Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and PigmentationQ37338655
Metabolic engineering of proanthocyanidin production by repressing the isoflavone pathways and redirecting anthocyanidin precursor flux in legumeQ37344086
Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) EmbryosQ37512758
Massive analysis of cDNA Ends (MACE) and miRNA expression profiling identifies proatherogenic pathways in chronic kidney diseaseQ37591528
Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populationsQ37614439
The mysteries of proanthocyanidin transport and polymerization.Q37730281
Evolutionary conservation of the transcriptional network regulating secondary cell wall biosynthesisQ37787597
Transcriptional networks for lignin biosynthesis: more complex than we thought?Q37827987
Role of the extensin superfamily in primary cell wall architectureQ37854291
First off the mark: early seed germinationQ37856600
The role of the pod in seed development: strategies for manipulating yieldQ37867163
Molecular mechanisms of seed dormancy.Q38012481
Patterns and processes in crop domestication: an historical review and quantitative analysis of 203 global food cropsQ38034256
Flavonoids as antioxidants in plants: location and functional significanceQ38047157
Genetic analysis of genes controlling natural variation of seed coat and flower colors in soybeanQ38484015
A Genome-wide Combinatorial Strategy Dissects Complex Genetic Architecture of Seed Coat Color in ChickpeaQ38888834
Inheritance of seed condensed tannins and their relationship with seed-coat color and pattern genes in common bean (Phaseolus vulgaris L.).Q38929109
Shattering fruits: variations on a dehiscent themeQ39020541
Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean.Q39044302
Vanillin-hydrochloric acid as a histochemical test for tanninQ39364176
Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related PathwaysQ40496536
Massive analysis of cDNA ends (MACE) reveals a co-segregating candidate gene for LpPg1 stem rust resistance in perennial ryegrass (Lolium perenne).Q40607290
GmHs1-1, encoding a calcineurin-like protein, controls hard-seededness in soybeanQ40811842
P921main subjectplant metabolomeQ129168692
transcriptomeQ252857
seed dormancyQ2397491
domesticationQ11395
P304page(s)542
P577publication date2017-04-25
P1433published inFrontiers in Plant ScienceQ27723840
P1476titleA Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.).
P478volume8

Reverse relations

cites work (P2860)
Q64059579Allelic Diversity of Acetyl Coenzyme A Carboxylase / Genes Implicated in Nuclear-Cytoplasmic Conflict in the Wild and Domesticated Pea ( sp.)
Q46011305An RNA Sequencing Transcriptome Analysis of Grasspea (Lathyrus sativus L.) and Development of SSR and KASP Markers.
Q55716455Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits.
Q98224922Genomic, Transcriptomic and Epigenomic Tools to Study the Domestication of Plants and Animals: A Field Guide for Beginners
Q91812314Identification of Differentially Expressed Genes Involved in the Molecular Mechanism of Pericarp Elongation and Differences in Sucrose and Starch Accumulation between Vegetable and Grain Pea (Pisum sativum L.).
Q93188915Metabolic alterations in pea leaves during arbuscular mycorrhiza development
Q58606896Molecular Evidence for Two Domestication Events in the Pea Crop
Q99630055Non-destructive identification of single hard seed via multispectral imaging analysis in six legume species
Q90390061The role of the testa during the establishment of physical dormancy in the pea seed
Q46018509Towards Better Understanding of Pea Seed Dormancy Using Laser Desorption/Ionization Mass Spectrometry.
Q38658899Unraveling Key Metabolomic Alterations in Wheat Embryos Derived from Freshly Harvested and Water-Imbibed Seeds of Two Wheat Cultivars with Contrasting Dormancy Status
Q60909656Variation in wild pea ( subsp. ) seed dormancy and its relationship to the environment and seed coat traits

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