Folding pathways of proteins with increasing degree of sequence identities but different structure and function

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Folding pathways of proteins with increasing degree of sequence identities but different structure and function is …
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scholarly articleQ13442814

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P819ADS bibcode2012PNAS..10917772G
P356DOI10.1073/PNAS.1201794109
P932PMC publication ID3497760
P698PubMed publication ID22652570
P5875ResearchGate publication ID225085918

P50authorAngela MorroneQ114448145
Carlo Travaglini AllocatelliQ33273334
Maurizio BrunoriQ33274063
Rajanish GiriQ37367373
Stefano GianniQ42424774
P2093author name stringPer Jemth
P2860cites workThe design and characterization of two proteins with 88% sequence identity but different structure and functionQ24680766
NMR structures of two designed proteins with high sequence identity but different fold and functionQ27652181
A minimal sequence code for switching protein structure and functionQ27658235
The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein foldingQ28306201
Lever-arm mechanics of processive myosinsQ28743071
Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturantsQ29617228
Funnels, pathways, and the energy landscape of protein folding: a synthesisQ29617521
Experiment and theory highlight role of native state topology in SH3 foldingQ30175284
The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.Q30175285
Changes of protein folding pathways by circular permutation. Overlapping nuclei promote global cooperativityQ81475972
A surprising simplicity to protein folding.Q30326802
Comparison of successive transition states for folding reveals alternative early folding pathways of two homologous proteinsQ30485355
Sub-microsecond protein foldingQ33241430
A conserved folding mechanism for PDZ domainsQ33275051
Optimization of rates of protein folding: the nucleation-condensation mechanism and its implicationsQ33739669
Phi-value analysis and the nature of protein-folding transition statesQ34330816
The denatured state dictates the topology of two proteins with almost identical sequence but different native structure and functionQ34537052
GB1 is not a two-state folder: identification and characterization of an on-pathway intermediateQ35342463
The family feud: do proteins with similar structures fold via the same pathway?Q36046430
Transient aggregates in protein folding are easily mistaken for folding intermediatesQ36178839
Malleability of protein folding pathways: a simple reason for complex behaviourQ36717597
Folding dynamics and mechanism of beta-hairpin formationQ36890665
From the first protein structures to our current knowledge of protein folding: delights and scepticismsQ37199653
Folding and stability of globular proteins and implications for functionQ37373854
Characterisation of transition state structures for protein folding using 'high', 'medium' and 'low' {Phi}-valuesQ38632179
Exploring the cytochrome c folding mechanism: cytochrome c552 from thermus thermophilus folds through an on-pathway intermediateQ42169209
Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: similarities and differences in the folding of homologous proteinsQ44290691
A common folding mechanism in the cytochrome c familyQ45079922
Engineering subtilisin into a fluoride-triggered processing protease useful for one-step protein purification.Q51581149
Development of the multiple sequence approximation within the AGADIR model of alpha-helix formation: comparison with Zimm-Bragg and Lifson-Roig formalisms.Q52267131
An integrated kinetic analysis of intermediates and transition states in protein folding reactions.Q52323750
Specific nucleus as the transition state for protein folding: evidence from the lattice model.Q52372545
The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein FoldingQ57823358
Structural characterization of a misfolded intermediate populated during the folding process of a PDZ domainQ58069943
Engineered Symmetric Connectivity of Secondary Structure Elements Highlights Malleability of Protein Folding PathwaysQ58069954
Folding studies of immunoglobulin-like β-sandwich proteins suggest that they share a common folding pathwayQ60162505
Three-state model for lysozyme folding: triangular folding mechanism with an energetically trapped intermediateQ73542293
P433issue44
P407language of work or nameEnglishQ1860
P921main subjectprotein structureQ735188
protein foldingQ847556
P1104number of pages5
P304page(s)17772-17776
P577publication date2012-05-31
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleFolding pathways of proteins with increasing degree of sequence identities but different structure and function
P478volume109

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cites work (P2860)
Q42161709Better theoretical models and protein design experiments can help to understand protein folding
Q85319860Chemical physics of protein folding
Q89727245Effects of Topology and Sequence in Protein Folding Linked via Conformational Fluctuations
Q51654036Examination of the quality of various force fields and solvation models for the equilibrium simulations of GA88 and GB88.
Q38927110How cooperative are protein folding and unfolding transitions?
Q61813463Investigating the Molecular Basis of the Aggregation Propensity of the Pathological D76N Mutant of Beta-2 Microglobulin: Role of the Denatured State
Q41149978Kinetic and thermodynamic studies reveal chemokine homologues CC11 and CC24 with an almost identical tertiary structure have different folding pathways
Q51601311Molecular dynamics simulations on the conformational transitions from the GA 98 (GA 88) to GB 98 (GB 88) proteins.
Q35875154Protein folding of the SAP domain, a naturally occurring two-helix bundle
Q41702344Protein folding, misfolding and aggregation: The importance of two-electron stabilizing interactions.
Q34319454Take home lessons from studies of related proteins
Q30388845Theoretical Insights into the Biophysics of Protein Bi-stability and Evolutionary Switches

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