Evaluations of different hypervariable regions of archaeal 16S rRNA genes in profiling of methanogens by Archaea-specific PCR and denaturing gradient gel electrophoresis.

scientific article

Evaluations of different hypervariable regions of archaeal 16S rRNA genes in profiling of methanogens by Archaea-specific PCR and denaturing gradient gel electrophoresis. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/AEM.00684-07
P932PMC publication ID2227698
P698PubMed publication ID18083874
P5875ResearchGate publication ID5764644

P50authorZhongtang YuQ43018940
Mark MorrisonQ61783706
P2093author name stringFloyd L Schanbacher
Rubén García-González
P2860cites workPerspectives on biotechnological applications of archaeaQ21342990
Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environmentQ24564814
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNAQ24569526
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomyQ24681903
Basic local alignment search toolQ25938991
Molecular diversity of rumen methanogens from sheep in Western Australia.Q30910566
Review and re-analysis of domain-specific 16S primersQ33194808
Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencingQ33213835
Archaeal communities in a tropical estuarine ecosystem: Guanabara Bay, BrazilQ33288935
Activity and diversity of methanogens in a petroleum hydrocarbon-contaminated aquiferQ33719786
Monitoring complex bacterial communities using culture-independent molecular techniques: application to soil environmentQ33949852
Development and application of real-time PCR assays for quantification of genes encoding tetracycline resistance.Q34143208
Industrial relevance of thermophilic ArchaeaQ34463755
Archaeal habitats--from the extreme to the ordinaryQ34502659
Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis.Q38446737
Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with Antarctic assemblagesQ40604049
Microbial community dynamics during start-up of acidogenic anaerobic reactorsQ43031013
Effect of wastewater composition on archaeal population diversity.Q43321436
Study of microbial community structures in UASB sludge treating municipal wastewater by denaturing gradient gel electrophoresis of 16S rDNA.Q43325303
Structure and functional analysis of the microbial community in an aerobic: anaerobic sequencing batch reactor (SBR) with no phosphorus removalQ43351729
Incorporation of soya oil hydrolysate in the diet of defaunated or refaunated sheep: effect on rumen fermentation in vitroQ44664865
Improved extraction of PCR-quality community DNA from digesta and fecal samplesQ44902635
Effects of forage level on the comparative feeding value of supplemental fat in growing-finishing diets for feedlot cattleQ46235588
Influence of flavomycin on ruminal fermentation and microbial populations in sheepQ46368009
Effect of coconut oil and defaunation treatment on methanogenesis in sheepQ47862875
Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar salternQ56049392
Degradation of organic contaminants found in organic wasteQ57826080
Rumen microbial population dynamics in response to photoperiodQ58337950
Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization(1)Q73128881
Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers setQ77465460
DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soilQ79802621
A simple remedy against artifactual double bands in denaturing gradient gel electrophoresisQ79868123
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectelectrophoresisQ185098
ArchaeaQ10872
P304page(s)889-893
P577publication date2007-12-14
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleEvaluations of different hypervariable regions of archaeal 16S rRNA genes in profiling of methanogens by Archaea-specific PCR and denaturing gradient gel electrophoresis
P478volume74

Reverse relations

cites work (P2860)
Q35695358A snapshot of microbial communities from the Kutch: one of the largest salt deserts in the World
Q34580444Archaeal characterization of bioaerosols from cage-housed and floor-housed poultry operations
Q33498330Assessment of the microbial ecology of ruminal methanogens in cattle with different feed efficiencies
Q43528330Bacterial and Archaeal Communities Variability Associated with Upwelling and Anthropogenic Pressures in the Protection Area of Arraial do Cabo (Cabo Frio region - RJ).
Q47782874Burning fire-prone Mediterranean shrublands: immediate changes in soil microbial community structure and ecosystem functions.
Q33626515Changes to the rumen bacterial population of sheep with the addition of 2,4,6-trinitrotoluene to their diet
Q28384108Characterization of bioaerosols from dairy barns: reconstructing the puzzle of occupational respiratory diseases by using molecular approaches
Q44970809Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons.
Q35599632Characterization of the microbiota in the guts of Triatoma brasiliensis and Triatoma pseudomaculata infected by Trypanosoma cruzi in natural conditions using culture independent methods
Q33563998Characterization of variation in rumen methanogenic communities under different dietary and host feed efficiency conditions, as determined by PCR-denaturing gradient gel electrophoresis analysis
Q39444782Co-existence of Methanogenesis and Sulfate Reduction with Common Substrates in Sulfate-Rich Estuarine Sediments
Q63379446Comparison of Fecal Methanogenic Archaeal Community Between Erhualian and Landrace Pigs Using Denaturing Gradient Gel Electrophoresis and Real-Time PCR Analysis
Q43029483Correlations between molecular and operational parameters in continuous lab-scale anaerobic reactors
Q34290466Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples
Q34728384Development of genus-specific primers for better understanding the diversity and population structure of Sphingomonas in soils
Q36842610Dietary supplementation of Rosmarinus officinalis L. leaves in sheep affects the abundance of rumen methanogens and other microbial populations
Q37504387Disentangling the influence of earthworms in sugarcane rhizosphere.
Q33945460Effect of Gynosaponin on Rumen In vitro Methanogenesis under Different Forage-Concentrate Ratios
Q38931362Effect of dietary fiber on the methanogen community in the hindgut of Lantang gilts
Q35666713Effect of organic loading on the microbiota in a temperature-phased anaerobic digestion (TPAD) system co-digesting dairy manure and waste whey.
Q51772272Effect of supplementing coconut or krabok oil, rich in medium-chain fatty acids on ruminal fermentation, protozoa and archaeal population of bulls.
Q36392141Effects of Adaptation of In vitro Rumen Culture to Garlic Oil, Nitrate, and Saponin and Their Combinations on Methanogenesis, Fermentation, and Abundances and Diversity of Microbial Populations
Q92833442Effects of corn supplementation on the antioxidant activity, selected minerals, and gene expression of selenoprotein and metallothionein in serum, liver, and kidney of sheep-fed palm kernel cake: urea-treated rice straw diets
Q46670344Effects of different sources of physically effective fiber on rumen microbial populations.
Q42188724Effects of essential oils on methane production and fermentation by, and abundance and diversity of, rumen microbial populations.
Q35595647Effects of garlic oil, nitrate, saponin and their combinations supplemented to different substrates on in vitro fermentation, ruminal methanogenesis, and abundance and diversity of microbial populations.
Q39777987Effects of methanogenic inhibitors on methane production and abundances of methanogens and cellulolytic bacteria in in vitro ruminal cultures
Q37196456Evaluation of 16S rRNA Gene Primer Pairs for Monitoring Microbial Community Structures Showed High Reproducibility within and Low Comparability between Datasets Generated with Multiple Archaeal and Bacterial Primer Pairs.
Q35749596Evaluation of soil bioremediation techniques in an aged diesel spill at the Antarctic Peninsula
Q33385985Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
Q35023968Growth of anaerobic methane-oxidizing archaea and sulfate-reducing bacteria in a high-pressure membrane capsule bioreactor.
Q34244003Gut microbiome of the critically endangered New Zealand parrot, the kakapo (Strigops habroptilus).
Q34740843High abundance of heterotrophic prokaryotes in hydrothermal springs of the Azores as revealed by a network of 16S rRNA gene-based methods
Q51578618High archaeal diversity in Antarctic circumpolar deep waters.
Q97521238Impacts of Anthropogenic Pollutants on Benthic Prokaryotic Communities in Mediterranean Touristic Ports
Q60921410Metagenomic insights into effects of thiamine supplementation on ruminal non-methanogen archaea in high-concentrate diets feeding dairy cows
Q47096204Metagenomic investigation of gastrointestinal microbiome in cattle.
Q53674280Methane production and methanogen levels in steers that differ in residual gain
Q35498139Methanogen prevalence throughout the gastrointestinal tract of pre-weaned dairy calves
Q64273761Microbial Diversity and Organic Acid Production of Guinea Pig Faecal Samples
Q34022150Microbial fouling community analysis of the cooling water system of a nuclear test reactor with emphasis on sulphate reducing bacteria
Q34332787Molecular tools for deciphering the microbial community structure and diversity in rumen ecosystem
Q51738333Nitrate decreases ruminal methane production with slight changes to ruminal methanogen composition of nitrate-adapted steers.
Q37283939Oligonucleotide primers, probes and molecular methods for the environmental monitoring of methanogenic archaea
Q49343451Organic acid production from potato starch waste fermentation by rumen microbial communities from Dutch and Thai dairy cows
Q28596402Piezo-tolerant natural gas-producing microbes under accumulating pCO2
Q34595271Prebiotic Oligosaccharides: Comparative Evaluation Using In Vitro Cultures of Infants' Fecal Microbiomes
Q47173822Prokaryotic Community Composition in Arctic Kongsfjorden and Sub-Arctic Northern Bering Sea Sediments As Revealed by 454 Pyrosequencing.
Q34496423RNA-based assessment of diversity and composition of active archaeal communities in the German Bight
Q51589505Relationship between rumen methanogens and methane production in dairy cows fed diets supplemented with a feed enzyme additive.
Q35015742Response of the methanogenic microbial communities in Amazonian oxbow lake sediments to desiccation stress.
Q39989791Salinity drives archaeal distribution patterns in high altitude lake sediments on the Tibetan Plateau
Q36185278Seasonal changes in bacterial communities associated with healthy and diseased Porites coral in southern Taiwan.
Q38987884Sediment Microbial Diversity of Three Deep-Sea Hydrothermal Vents Southwest of the Azores
Q34519249Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis
Q34562453Spatial and temporal variations of microbial community in a mixed plug-flow loop reactor fed with dairy manure
Q39106010Structure and function of methanogenic microbial communities in sediments of Amazonian lakes with different water types.
Q37102574The Complete Genome Sequence of Methanobrevibacter sp. AbM4
Q37497533The biogeography of soil archaeal communities on the eastern Tibetan Plateau.
Q34868000The core faecal bacterial microbiome of Irish Thoroughbred racehorses
Q61799560The effect of 16S rRNA region choice on bacterial community metabarcoding results
Q35761397The links between ecosystem multifunctionality and above- and belowground biodiversity are mediated by climate
Q35361879Use of PCR-DGGE Based Molecular Methods to Analyse Microbial Community Diversity and Stability during the Thermophilic Stages of an ATAD Wastewater Sludge Treatment Process as an Aid to Performance Monitoring.

Search more.