| scholarly article | Q13442814 |
| P2093 | author name string | David H Mathews | |
| Zhi John Lu | |||
| P2860 | cites work | Predicting oligonucleotide affinity to nucleic acid targets | Q24539440 |
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| siRNA becomes smart and intelligent. | Q51967527 | ||
| An algorithm for selection of functional siRNA sequences. | Q52000725 | ||
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| The efficacy of small interfering RNAs targeted to the type 1 insulin-like growth factor receptor (IGF1R) is influenced by secondary structure in the IGF1R transcript | Q73044884 | ||
| Determining the influence of structure on hybridization using oligonucleotide arrays | Q78071041 | ||
| P433 | issue | 2 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | thermodynamics | Q11473 |
| P1104 | number of pages | 8 | |
| P304 | page(s) | 640-647 | |
| P577 | publication date | 2007-12-10 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Efficient siRNA selection using hybridization thermodynamics | |
| P478 | volume | 36 |
| Q48139221 | A detailed investigation of accessibilities around target sites of siRNAs and miRNAs |
| Q33407830 | A structural interpretation of the effect of GC-content on efficiency of RNA interference |
| Q42243267 | Accelerating calculations of RNA secondary structure partition functions using GPUs |
| Q37002986 | AccessFold: predicting RNA-RNA interactions with consideration for competing self-structure |
| Q24646758 | Accurate SHAPE-directed RNA structure determination |
| Q39981882 | Approximate Bayesian feature selection on a large meta-dataset offers novel insights on factors that effect siRNA potency |
| Q33511756 | Comparing artificial neural networks, general linear models and support vector machines in building predictive models for small interfering RNAs |
| Q34370079 | Computational approaches for RNA energy parameter estimation |
| Q35775827 | Computational prediction of efficient splice sites for trans-splicing ribozymes |
| Q38320055 | Delivery of siRNA silencing Runx2 using a multifunctional polymer-lipid nanoparticle inhibits osteogenesis in a cell culture model of heterotopic ossification |
| Q37111734 | Design of siRNA Therapeutics from the Molecular Scale |
| Q34644554 | Designing highly active siRNAs for therapeutic applications. |
| Q21560930 | Designing of highly effective complementary and mismatch siRNAs for silencing a gene |
| Q42210120 | Differential RNAi responses of Nicotiana benthamiana individuals transformed with a hairpin-inducing construct during Plum pox virus challenge |
| Q38636399 | Effect of RNA interference of the expression of HMGA2 on the proliferation and invasion ability of ACHN renal cell carcinoma cells |
| Q46543742 | Exact calculation of loop formation probability identifies folding motifs in RNA secondary structures |
| Q45869957 | Ezrin mRNA target site selection for DNAzymes using secondary structure and hybridization thermodynamics |
| Q34313777 | Folding and Finding RNA Secondary Structure |
| Q53393012 | Fractional thermolysis by bipolar radiofrequency facilitates cutaneous delivery of peptide and siRNA with minor loss of barrier function. |
| Q36740097 | Fundamental differences in the equilibrium considerations for siRNA and antisense oligodeoxynucleotide design |
| Q27013905 | High-throughput characterization of protein-RNA interactions |
| Q37584772 | Improved asymmetry prediction for short interfering RNAs |
| Q43124137 | Improved nucleic acid descriptors for siRNA efficacy prediction |
| Q33691748 | Informatics Approach to the Rational Design of siRNA Libraries |
| Q84362500 | LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search |
| Q97542184 | LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities |
| Q24618202 | Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences |
| Q39605747 | Mutant CAG repeats of Huntingtin transcript fold into hairpins, form nuclear foci and are targets for RNA interference |
| Q35455068 | MysiRNA-designer: a workflow for efficient siRNA design |
| Q36749348 | OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics |
| Q33701411 | Optimization of a novel biophysical model using large scale in vivo antisense hybridization data displays improved prediction capabilities of structurally accessible RNA regions |
| Q33565657 | Optimization of duplex stability and terminal asymmetry for shRNA design |
| Q90681395 | PinMol: Python application for designing molecular beacons for live cell imaging of endogenous mRNAs |
| Q82521703 | Prediction of siRNA Potency Using Sparse Logistic Regression |
| Q28255877 | Progress toward in vivo use of siRNAs-II |
| Q33842172 | Quantitative prediction of miRNA-mRNA interaction based on equilibrium concentrations |
| Q38289936 | RNA Secondary Structure Prediction |
| Q28655982 | RNA secondary structure analysis using RNAstructure |
| Q37422746 | RNA secondary structure prediction |
| Q35600435 | RNAi-mediated TCR knockdown prevents autoimmunity in mice caused by mixed TCR dimers following TCR gene transfer |
| Q36954094 | RNAstructure: Web servers for RNA secondary structure prediction and analysis |
| Q24602642 | RNAstructure: software for RNA secondary structure prediction and analysis |
| Q37405760 | Rational design leads to more potent RNA interference against hepatitis B virus: factors effecting silencing efficiency |
| Q33776479 | Recognition of siRNA asymmetry by TAR RNA binding protein. |
| Q28483920 | Reconsideration of in-silico siRNA design based on feature selection: a cross-platform data integration perspective |
| Q35876214 | SHAPE-directed discovery of potent shRNA inhibitors of HIV-1. |
| Q39841062 | Secondary RNA structure and its role in RNA interference to silence the respiratory syncytial virus fusion protein gene |
| Q39784931 | Selection of hyperfunctional siRNAs with improved potency and specificity |
| Q38014586 | Small interfering ribonucleic acid design strategies for effective targeting and gene silencing. |
| Q41655216 | Terminal Duplex Stability and Nucleotide Identity Differentially Control siRNA Loading and Activity in RNA Interference |
| Q45362584 | The design of optimal therapeutic small interfering RNA molecules targeting diverse strains of influenza A virus |
| Q51181773 | The effect of regions flanking target site on siRNA potency. |
| Q44175967 | The impact of target site accessibility on the design of effective siRNAs |
| Q34404780 | The role of master regulators in the metabolic/transcriptional coupling in breast carcinomas |
| Q35734891 | Tiling genomes of pathogenic viruses identifies potent antiviral shRNAs and reveals a role for secondary structure in shRNA efficacy |
| Q49402141 | Using RNA Sequence and Structure for the Prediction of Riboswitch Aptamer: A Comprehensive Review of Available Software and Tools. |
| Q58600311 | mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances |
| Q31028970 | sTarPicker: a method for efficient prediction of bacterial sRNA targets based on a two-step model for hybridization |
| Q34079343 | siPRED: predicting siRNA efficacy using various characteristic methods |
| Q36021477 | siRNA Design Software for a Target Gene-Specific RNA Interference. |
| Q39404757 | siRNAs target sites selection of ezrin and the influence of RNA interference on ezrin expression and biological characters of osteosarcoma cells |
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