Real-time RT-PCR high-resolution melting curve analysis and multiplex RT-PCR to detect and differentiate grapevine leafroll-associated virus 3 variant groups I, II, III and VI

scientific article

Real-time RT-PCR high-resolution melting curve analysis and multiplex RT-PCR to detect and differentiate grapevine leafroll-associated virus 3 variant groups I, II, III and VI is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1186/1743-422X-9-219
P932PMC publication ID3519601
P698PubMed publication ID23016734
P5875ResearchGate publication ID231223075

P2093author name stringAnna E C Jooste
Hans J Maree
Johan T Burger
Rachelle Bester
P2860cites workQuasispecies diversity determines pathogenesis through cooperative interactions in a viral populationQ29616266
Rapid evolution of RNA genomesQ29616272
An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry developmentQ33263600
Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard.Q33532943
Five phylogenetic groups identified in the coat protein gene of grapevine leafroll-associated virus 3 obtained from Portuguese grapevine varietiesQ33770654
High-resolution DNA melting analysis for simple and efficient molecular diagnosticsQ34004607
3'-coterminal subgenomic RNAs and putative cis-acting elements of Grapevine leafroll-associated virus 3 reveals 'unique' features of gene expression strategy in the genus AmpelovirusQ34068199
High-resolution melting analysis as a powerful tool to discriminate and genotype Pseudomonas savastanoi pathovars and strainsQ34147542
Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 proteinQ39466792
Additive effects of bovine serum albumin, dithiothreitol, and glycerol on PCR.Q41058279
Complete nucleotide sequence and genome organization of Grapevine leafroll-associated virus 3, type member of the genus AmpelovirusQ42630153
Complete nucleotide sequence of a new strain of grapevine leafroll-associated virus 3 in South Africa.Q42649329
Genome analysis and detection of a Chilean isolate of Grapevine leafroll associated virus-3.Q42656473
Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virusQ43676461
Three genetic grapevine leafroll-associated virus 3 variants identified from South African vineyards show high variability in their 5'UTR.Q44263096
Mapping of the 5' terminal nucleotides of Grapevine leafroll-associated virus 3 sgRNAsQ45375162
Differentiation between vaccine and wild-type varicella-zoster virus genotypes by high-resolution melt analysis of single nucleotide polymorphismsQ45395067
Complete nucleotide sequence of a South African isolate of grapevine leafroll-associated virus 3 reveals a 5'UTR of 737 nucleotidesQ45397122
Genetic variability and population structure of Grapevine leafroll-associated virus 3 isolates.Q45534212
Modified cetyltrimethylammonium bromide method improves robustness and versatility: the benchmark for plant RNA extractionQ46180786
Real-time RT-PCR (TaqMan) assays for the detection of Grapevine Leafroll associated viruses 1-5 and 9.Q46556287
Classification of Mycoplasma synoviae strains using single-strand conformation polymorphism and high-resolution melting-curve analysis of the vlhA gene single-copy regionQ50671910
Optimization of high-resolution melting analysis for simultaneous genotyping of two 11β-hydroxysteroid dehydrogenase type 1 gene polymorphisms.Q54399551
The family Closteroviridae revised.Q55036164
An efficient and economic enhancer mix for PCRQ57015951
Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of virusesQ57247207
Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virologyQ60550441
P304page(s)219
P577publication date2012-09-27
P1433published inVirology JournalQ7934868
P1476titleReal-time RT-PCR high-resolution melting curve analysis and multiplex RT-PCR to detect and differentiate grapevine leafroll-associated virus 3 variant groups I, II, III and VI
P478volume9

Reverse relations

cites work (P2860)
Q28548014A New Method for Rapid Screening of End-Point PCR Products: Application to Single Genome Amplified HIV and SIV Envelope Amplicons
Q37413455Detection of sdhB Gene Mutations in SDHI-Resistant Isolates of Botrytis cinerea Using High Resolution Melting (HRM) Analysis.
Q39063056Differential expression of miRNAs and associated gene targets in grapevine leafroll-associated virus 3-infected plants.
Q42229712Genetic variability within the Polish tomato torrado virus Kra isolate caused by deletions in the 3'-untranslated region of genomic RNA1.
Q21131127Grapevine leafroll-associated virus 3
Q59235774Grapevine leafroll-associated virus 3
Q36151534Harbin: a quantitation PCR analysis tool.
Q37400962High-resolution melt analysis to detect sequence variations in highly homologous gene regions: application to CYP2B6.
Q59235816Identification and distribution of multiple virus infections in Grapevine leafroll diseased vineyards
Q42288235Novel single-step multiplex real-time polymerase chain reaction assay for simultaneous quantification of hepatitis virus A, B, C, and E in serum.
Q53827718Rapid identification of tomato Sw-5 resistance-breaking isolates of Tomato spotted wilt virus using high resolution melting and TaqMan SNP Genotyping assays as allelic discrimination techniques.
Q56978627Recent Advances on the Multiplex Molecular Detection of Plant Viruses and Viroids

Search more.