| scholarly article | Q13442814 |
| P356 | DOI | 10.1093/NAR/GKS925 |
| P8608 | Fatcat ID | release_ws7tsacvmbdlnex2vc7gm3zqoi |
| P932 | PMC publication ID | 3526278 |
| P698 | PubMed publication ID | 23074191 |
| P5875 | ResearchGate publication ID | 232278521 |
| P2093 | author name string | John F Marko | |
| Elnaz Alipour | |||
| P2860 | cites work | Linking topology of large DNA molecules. | Q55511551 |
| Condensin structures chromosomal DNA through topological links | Q59344613 | ||
| Formation of loops in DNA under tension | Q81557177 | ||
| Micromechanics of human mitotic chromosomes | Q35147918 | ||
| Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication | Q35316481 | ||
| Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis | Q36007346 | ||
| Engineered chromosome regions with altered sequence composition demonstrate hierarchical large-scale folding within metaphase chromosomes | Q36323083 | ||
| Control of actin filament treadmilling in cell motility | Q37700675 | ||
| Deciphering condensin action during chromosome segregation | Q37901691 | ||
| Scaling of Linking and Writhing Numbers for Spherically Confined and Topologically Equilibrated Flexible Polymers | Q42757723 | ||
| Chromatin Boundaries, Insulators, and Long-Range Interactions in the Nucleus | Q42837625 | ||
| MukB colocalizes with the oriC region and is required for organization of the two Escherichia coli chromosome arms into separate cell halves | Q42911216 | ||
| Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I. | Q43959489 | ||
| SARs are cis DNA elements of chromosome dynamics: synthesis of a SAR repressor protein. | Q52320794 | ||
| The Escherichia coli chromosome is organized with the left and right chromosome arms in separate cell halves. | Q53595448 | ||
| The ABCs of SMC proteins: two-armed ATPases for chromosome condensation, cohesion, and repair | Q24292316 | ||
| Differential contributions of condensin I and condensin II to mitotic chromosome architecture in vertebrate cells | Q24297107 | ||
| Dynamic organization of chromosomal DNA in Escherichia coli | Q24610157 | ||
| Condensin and cohesin complexity: the expanding repertoire of functions | Q24617076 | ||
| Mediator and cohesin connect gene expression and chromatin architecture | Q24632695 | ||
| Human chromokinesin KIF4A functions in chromosome condensation and segregation | Q24676383 | ||
| Identification of cis-acting sites for condensin loading onto budding yeast chromosomes | Q27930322 | ||
| Comprehensive mapping of long-range interactions reveals folding principles of the human genome | Q28131819 | ||
| Capturing chromosome conformation | Q28201750 | ||
| Cohesin mediates transcriptional insulation by CCCTC-binding factor | Q29618130 | ||
| Entropy as the driver of chromosome segregation | Q30503131 | ||
| Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament. | Q33740115 | ||
| Chromosome and replisome dynamics in E. coli: loss of sister cohesion triggers global chromosome movement and mediates chromosome segregation | Q34278207 | ||
| Distinct functions of condensin I and II in mitotic chromosome assembly | Q34372373 | ||
| Mitotic chromosomes are chromatin networks without a mechanically contiguous protein scaffold | Q34386361 | ||
| ATP-dependent positive supercoiling of DNA by 13S condensin: a biochemical implication for chromosome condensation | Q34438428 | ||
| 13S condensin actively reconfigures DNA by introducing global positive writhe: implications for chromosome condensation | Q34504401 | ||
| Chromosome territories--a functional nuclear landscape. | Q34523990 | ||
| Condensin is required for nonhistone protein assembly and structural integrity of vertebrate mitotic chromosomes | Q34536233 | ||
| Real-time detection of single-molecule DNA compaction by condensin I. | Q34548465 | ||
| Micromechanical studies of mitotic chromosomes | Q34591592 | ||
| Polo kinase regulates mitotic chromosome condensation by hyperactivation of condensin DNA supercoiling activity | Q34608350 | ||
| Condensin association with histone H2A shapes mitotic chromosomes | Q34629750 | ||
| MCPH1 regulates chromosome condensation and shaping as a composite modulator of condensin II. | Q34632225 | ||
| A heterodimeric coiled-coil protein required for mitotic chromosome condensation in vitro | Q34725116 | ||
| Polymer models of meiotic and mitotic chromosomes | Q34743523 | ||
| Entropy-driven spatial organization of highly confined polymers: lessons for the bacterial chromosome | Q34887137 | ||
| P275 | copyright license | Creative Commons Attribution-NonCommercial 3.0 Unported | Q18810331 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 22 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | self-organization | Q609408 |
| P304 | page(s) | 11202-11212 | |
| P577 | publication date | 2012-10-15 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Self-organization of domain structures by DNA-loop-extruding enzymes | |
| P478 | volume | 40 |
| Q90591056 | 3D ATAC-PALM: super-resolution imaging of the accessible genome |
| Q38861381 | 3D genomics imposes evolution of the domain model of eukaryotic genome organization |
| Q38281616 | A CTCF Code for 3D Genome Architecture |
| Q48093376 | A Topology-Centric View on Mitotic Chromosome Architecture |
| Q64945753 | A combination of transcription factors mediates inducible interchromosomal contacts. |
| Q91743008 | A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules |
| Q92129377 | A folded conformation of MukBEF and cohesin |
| Q48216188 | A pathway for mitotic chromosome formation. |
| Q52597946 | A quantitative map of human Condensins provides new insights into mitotic chromosome architecture. |
| Q91704885 | A tethered-inchworm model of SMC DNA translocation |
| Q47095776 | Analysis of high-resolution 3D intrachromosomal interactions aided by Bayesian network modeling. |
| Q52430543 | Assessing sufficiency and necessity of enhancer activities for gene expression and the mechanisms of transcription activation. |
| Q33833458 | Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus. |
| Q58545955 | Bacterial chromosome organization by collective dynamics of SMC condensins |
| Q86043904 | Biophysics of protein-DNA interactions and chromosome organization |
| Q38856088 | CRISPR/Cas9 genome editing throws descriptive 3-D genome folding studies for a loop |
| Q28079447 | CTCF: making the right connections |
| Q47645730 | Caenorhabditis elegans Dosage Compensation: Insights into Condensin-Mediated Gene Regulation |
| Q47320129 | Catching DNA with hoops-biophysical approaches to clarify the mechanism of SMC proteins |
| Q55317601 | Cell-Cycle Regulation of Dynamic Chromosome Association of the Condensin Complex. |
| Q63384253 | Centromere Structure and Function |
| Q89877102 | Chromatin Compaction Leads to a Preference for Peripheral Heterochromatin |
| Q38853109 | Chromatin Domains: The Unit of Chromosome Organization |
| Q59831525 | Chromatin Loop Extrusion and Chromatin Unknotting. |
| Q37289730 | Chromatin architecture underpinning transcription elongation |
| Q36331962 | Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes |
| Q64123945 | Chromatin organization by an interplay of loop extrusion and compartmental segregation |
| Q36937056 | Chromosome Compaction by Active Loop Extrusion |
| Q91586980 | Chromosome organization by one-sided and two-sided loop extrusion |
| Q91452344 | Chromosome organization in bacteria: mechanistic insights into genome structure and function |
| Q41664335 | Cohesin Can Remain Associated with Chromosomes during DNA Replication |
| Q46223387 | Cohesin Loss Eliminates All Loop Domains |
| Q39140247 | Cohesin biology meets the loop extrusion model |
| Q41040321 | Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle |
| Q33363138 | Compaction and segregation of sister chromatids via active loop extrusion |
| Q57175562 | Computational methods for analyzing and modeling genome structure and organization |
| Q89408874 | Condensin Depletion Causes Genome Decompaction Without Altering the Level of Global Gene Expression in Saccharomyces cerevisiae |
| Q89997946 | Condensin II drives large-scale folding and spatial partitioning of interphase chromosomes in Drosophila nuclei |
| Q39020445 | Condensin Regulation of Genome Architecture |
| Q35952752 | Condensin promotes the juxtaposition of DNA flanking its loading site in Bacillus subtilis. |
| Q92994522 | Conformational heterogeneity in human interphase chromosome organization reconciles the FISH and Hi-C paradox |
| Q38899514 | Control of Smc Coiled Coil Architecture by the ATPase Heads Facilitates Targeting to Chromosomal ParB/parS and Release onto Flanking DNA. |
| Q38601706 | Crossed wires: 3D genome misfolding in human disease. |
| Q97531449 | Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism |
| Q58132113 | DNA Mechanics and Topology |
| Q52652232 | DNA Supercoiling, Topoisomerases, and Cohesin: Partners in Regulating Chromatin Architecture? |
| Q90640447 | DNA sequence-dependent chromatin architecture and nuclear hubs formation |
| Q59074200 | DNA's secret weapon against knots and tangles |
| Q90053773 | DNA-loop extruding condensin complexes can traverse one another |
| Q92599712 | DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes |
| Q92325299 | DamC reveals principles of chromatin folding in vivo without crosslinking and ligation |
| Q58576065 | Deciphering the structure of the condensin protein complex |
| Q37161595 | Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture |
| Q35647731 | Differential chromosome conformations as hallmarks of cellular identity revealed by mathematical polymer modeling |
| Q90114569 | Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF |
| Q64124928 | Emerging Evidence of Chromosome Folding by Loop Extrusion |
| Q27323070 | Entropy gives rise to topologically associating domains |
| Q33758067 | Epigenetic characteristics of the mitotic chromosome in 1D and 3D. |
| Q37034822 | Escherichia coli Chromosomal Loci Segregate from Midcell with Universal Dynamics. |
| Q64103107 | Extensive epigenomic integration of the glucocorticoid response in primary human monocytes and in vitro derived macrophages |
| Q47210927 | Extrusion without a motor: a new take on the loop extrusion model of genome organization. |
| Q36957773 | Formation of Chromosomal Domains by Loop Extrusion. |
| Q97520848 | Free energy-based model of CTCF-mediated chromatin looping in the human genome |
| Q41554525 | Gene functioning and storage within a folded genome |
| Q38696563 | Genome Organization Drives Chromosome Fragility |
| Q38813244 | Genome maintenance in the context of 4D chromatin condensation. |
| Q39311049 | Genome organization during the cell cycle: unity in division. |
| Q91782395 | Genomic insights into chromatin reprogramming to totipotency in embryos |
| Q48240056 | High-resolution TADs reveal DNA sequences underlying genome organization in flies. |
| Q100455200 | Highly interconnected enhancer communities control lineage-determining genes in human mesenchymal stem cells |
| Q49843050 | Insights about genome function from spatial organization of the genome. |
| Q92077899 | Leagues of their own: sexually dimorphic features of meiotic prophase I |
| Q96953984 | Mitotic chromosome organization: General rules meet species-specific variability |
| Q38585877 | Modeling chromosomes: Beyond pretty pictures. |
| Q55304152 | Modeling the functions of condensin in chromosome shaping and segregation. |
| Q34667318 | Molecular basis for SMC rod formation and its dissolution upon DNA binding |
| Q27339091 | Multistep assembly of DNA condensation clusters by SMC. |
| Q50004946 | Nonequilibrium Chromosome Looping via Molecular Slip Links |
| Q47136297 | Oligomerization and ATP stimulate condensin-mediated DNA compaction |
| Q92564943 | On the existence and functionality of topologically associating domains |
| Q100940696 | Opposing Effects of Cohesin and Transcription on CTCF Organization Revealed by Super-resolution Imaging |
| Q89877044 | Organization of the Escherichia coli Chromosome by a MukBEF Axial Core |
| Q33693950 | Organization of the mitotic chromosome |
| Q58115647 | Organizational principles of 3D genome architecture |
| Q92718080 | Physical and data structure of 3D genome |
| Q88444838 | Principles of Chromosome Architecture Revealed by Hi-C |
| Q90883934 | Principles of meiotic chromosome assembly revealed in S. cerevisiae |
| Q34171599 | Probing transient protein-mediated DNA linkages using nanoconfinement |
| Q50957211 | Promoter interactions direct chromatin folding in embryonic stem cells. |
| Q90240175 | RNA polymerases as moving barriers to condensin loop extrusion |
| Q103836664 | Radiation-induced DNA damage and repair effects on 3D genome organization |
| Q47171909 | Real-time detection of condensin-driven DNA compaction reveals a multistep binding mechanism |
| Q52374532 | Real-time imaging of DNA loop extrusion by condensin. |
| Q46814626 | Recent evidence that TADs and chromatin loops are dynamic structures |
| Q39003339 | Regulation of disease-associated gene expression in the 3D genome |
| Q34522050 | SMC complexes: from DNA to chromosomes |
| Q35640052 | SMC condensin entraps chromosomal DNA by an ATP hydrolysis dependent loading mechanism in Bacillus subtilis |
| Q57643467 | SMC condensin: promoting cohesion of replicon arms |
| Q42367617 | Scc2/Nipbl hops between chromosomal cohesin rings after loading |
| Q38490905 | Shaping mitotic chromosomes: From classical concepts to molecular mechanisms. |
| Q103836760 | Shaping of the 3D genome by the ATPase machine cohesin |
| Q48266900 | Single-cell Hi-C bridges microscopy and genome-wide sequencing approaches to study 3D chromatin organization. |
| Q42657177 | Structural Basis for a Safety-Belt Mechanism That Anchors Condensin to Chromosomes. |
| Q56529613 | Structural basis for Scc3-dependent cohesin recruitment to chromatin |
| Q64068290 | Synergy of topoisomerase and structural-maintenance-of-chromosomes proteins creates a universal pathway to simplify genome topology |
| Q98196902 | TADs without borders |
| Q48166021 | Taking cohesin and condensin in context. |
| Q91951347 | Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection |
| Q36678954 | The 3D Genome as Moderator of Chromosomal Communication |
| Q33649701 | The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension |
| Q88506543 | The Energetics and Physiological Impact of Cohesin Extrusion |
| Q37627363 | The SMC condensin complex is required for origin segregation in Bacillus subtilis. |
| Q40970100 | The SUMO deconjugating peptidase Smt4 contributes to the mechanism required for transition from sister chromatid arm cohesion to sister chromatid pericentromere separation |
| Q50144994 | The biology and polymer physics underlying large-scale chromosome organization |
| Q47838187 | The condensin complex is a mechanochemical motor that translocates along DNA. |
| Q100316460 | The condensin holocomplex cycles dynamically between open and collapsed states |
| Q90710310 | The emergence of genome architecture and zygotic genome activation |
| Q37387831 | The spatial segregation of pericentric cohesin and condensin in the mitotic spindle. |
| Q92439389 | The structural basis for cohesin-CTCF-anchored loops |
| Q47317900 | Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins. |
| Q41769677 | Topologically-associating domains: gene warehouses adapted to serve transcriptional regulation |
| Q58609851 | Towards a Unified Model of SMC Complex Function |
| Q38666734 | Towards a predictive model of chromatin 3D organization. |
| Q92052959 | Transcription factors and 3D genome conformation in cell-fate decisions |
| Q50000204 | Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes |
| Q92710801 | Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells |
| Q42183879 | Tuned SMC Arms Drive Chromosomal Loading of Prokaryotic Condensin. |
| Q26766143 | Understanding Spatial Genome Organization: Methods and Insights |
| Q89499360 | Understanding the 3D genome: Emerging impacts on human disease |
| Q33865154 | YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment |
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