Requirements for translation re-initiation in Escherichia coli: roles of initiator tRNA and initiation factors IF2 and IF3

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Requirements for translation re-initiation in Escherichia coli: roles of initiator tRNA and initiation factors IF2 and IF3 is …
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scholarly articleQ13442814

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P356DOI10.1111/J.1365-2958.2008.06104.X
P932PMC publication ID2268962
P698PubMed publication ID18221266
P5875ResearchGate publication ID5631077

P2093author name stringJae-Ho Yoo
Uttam L RajBhandary
P2860cites workEvidence for a role of initiation factor 3 in recycling of ribosomal complexes stalled on mRNAs in Escherichia coliQ24810673
Crystal structure of the ribosome at 5.5 A resolutionQ27630949
The complete genome sequence of Escherichia coli K-12Q27860542
Structure of the 70S ribosome complexed with mRNA and tRNAQ27860602
The ribosome-recycling step: consensus or controversy?Q28298058
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Translation limits synthesis of an assembly-initiating coat protein of filamentous phage IKe.Q33723532
Regulation of ribosome biosynthesis in Escherichia coli and Saccharomyces cerevisiae: diversity and common principlesQ33772398
Initiation of protein synthesis in mammalian cells with codons other than AUG and amino acids other than methionineQ33777524
Transcription termination and anti-termination in E. coliQ34143329
Mutation at position 791 in Escherichia coli 16S ribosomal RNA affects processes involved in the initiation of protein synthesisQ34285685
Altered discrimination of start codons and initiator tRNAs by mutant initiation factor 3Q34363698
Initiation of protein synthesis in bacteriaQ34401329
Escherichia coli formylmethionine tRNA: mutations in GGGCCC sequence conserved in anticodon stem of initiator tRNAs affect initiation of protein synthesis and conformation of anticodon loopQ34587537
Structure and function of bacterial initiation factorsQ34948195
Location of translational initiation factor IF3 on the small ribosomal subunitQ35124122
Translational initiation at the coat-protein gene of phage MS2: native upstream RNA relieves inhibition by local secondary structure.Q54652376
Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetaseQ54687239
Scanning model for translational reinitiation in eubacteria.Q54712156
In vitro conversion of a methionine to a glutamine-acceptor tRNA.Q54789310
Modulation of ribosomal recruitment to 5′-terminal start codons by translation initiation factors IF2 and IF3Q61758813
The in vitro translation of a terminating signal by a single Escherichia coli ribosome. The fate of the subunitsQ66900079
Mutants of initiator tRNA that function both as initiators and elongatorsQ68010619
Translation of phage f1 gene VII occurs from an inherently defective initiation site made functional by couplingQ69743544
Late events in translation initiation. Adjustment of fMet-tRNA in the ribosomal P-siteQ71106718
Novel roles for classical factors at the interface between translation termination and initiationQ77847678
A ribosome binding site sequence is necessary for efficient expression of the distal gene of a translationally-coupled gene pairQ35285524
IF3-mediated suppression of a GUA initiation codon mutation in the recJ gene of Escherichia coliQ35631832
Ribosome-initiator tRNA complex as an intermediate in translation initiation in Escherichia coli revealed by use of mutant initiator tRNAs and specialized ribosomes.Q35908076
Initiator transfer RNAsQ36104935
Role of methionine and formylation of initiator tRNA in initiation of protein synthesis in Escherichia coliQ36136975
Mutational alterations of translational coupling in the L11 ribosomal protein operon of Escherichia coliQ36240631
Formylation of initiator tRNA methionine in procaryotic protein synthesis: in vivo polarity in lactose operon expressionQ36422977
Initiation of protein synthesis from a termination codonQ37702021
Initiation of mRNA translation in prokaryotesQ37946610
Mutational analysis of an inherently defective translation initiation siteQ38329298
Discrimination of 5'-terminal start codons by translation initiation factor 3 is mediated by ribosomal protein S1.Q38332333
Interaction of bacterial initiation factor 2 with initiator tRNA.Q38359526
Translation initiation factor IF3: two domains, five functions, one mechanism?Q39645596
Long-range translational coupling in single-stranded RNA bacteriophages: an evolutionary analysis.Q39724295
Mechanism of coordinated synthesis of the antagonistic regulatory proteins NifL and NifA of Klebsiella pneumoniaeQ39843598
The dsg gene of Myxococcus xanthus encodes a protein similar to translation initiation factor IF3.Q39930819
The translational fidelity function of IF3 during transition from the 30 S initiation complex to the 70 S initiation complexQ40296083
Selective stimulation of translation of leaderless mRNA by initiation factor 2: evolutionary implications for translationQ40392383
Role of ribosome recycling factor (RRF) in translational couplingQ40430140
Translational reinitiation in the presence and absence of a Shine and Dalgarno sequence.Q40451768
The stability of Escherichia coli lacZ mRNA depends upon the simultaneity of its synthesis and translationQ40788726
Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAsQ41023136
Ribosome recycling by ribosome recycling factor (RRF)--an important but overlooked step of protein biosynthesisQ41090537
Mechanism of translational coupling in the nifLA operon of Klebsiella pneumoniaeQ41831489
Evidence for in vivo ribosome recycling, the fourth step in protein biosynthesisQ42074776
How initiation factors tune the rate of initiation of protein synthesis in bacteriaQ42410350
Regulation of dev, an operon that includes genes essential for Myxococcus xanthus development and CRISPR-associated genes and repeatsQ42615041
Transient idling of posttermination ribosomes ready to reinitiate protein synthesisQ42645975
The mechanism of translational coupling in Escherichia coli. Higher order structure in the atpHA mRNA acts as a conformational switch regulating the access of de novo initiating ribosomesQ42674336
Role of the three consecutive G:C base pairs conserved in the anticodon stem of initiator tRNAs in initiation of protein synthesis in Escherichia coliQ43205900
Translation initiation factor 3 antagonizes authentic start codon selection on leaderless mRNAsQ44176895
Anticodon sequence mutants of Escherichia coli initiator tRNA: effects of overproduction of aminoacyl-tRNA synthetases, methionyl-tRNA formyltransferase, and initiation factor 2 on activity in initiationQ44419987
Translation initiation with GUC codon in the archaeon Halobacterium salinarum: implications for translation of leaderless mRNA and strict correlation between translation initiation and presence of mRNA.Q44908633
Deletion of a conserved, central ribosomal intersubunit RNA bridgeQ46344389
Interaction of translation initiation factor 3 with the 30S ribosomal subunitQ46450525
Involvement of 16S rRNA nucleotides G1338 and A1339 in discrimination of initiator tRNA.Q46619225
Unfolding of mRNA secondary structure by the bacterial translation initiation complexQ46838029
Molecular characterisation of the pifC gene encoding translation initiation factor 3, which is required for normal photosynthetic complex formation in Rhodobacter sphaeroides NCIB 8253.Q48042356
The role of the AUU initiation codon in the negative feedback regulation of the gene for translation initiation factor IF3 in Escherichia coli.Q48062355
Domains of initiator tRNA and initiation codon crucial for initiator tRNA selection by Escherichia coli IF3Q52240106
Efficient attenuation of stochasticity in gene expression through post-transcriptional control.Q52561212
The real-time path of translation factor IF3 onto and off the ribosome.Q54448014
Sequence of steps in ribosome recycling as defined by kinetic analysis.Q54486138
Evidence for the translation initiation of leaderless mRNAs by the intact 70 S ribosome without its dissociation into subunits in eubacteria.Q54514033
Effect of the amino acid attached to Escherichia coli initiator tRNA on its affinity for the initiation factor IF2 and on the IF2 dependence of its binding to the ribosome.Q54572078
Mutants of Escherichia coli initiator tRNA defective in initiation. Effects of overproduction of methionyl-tRNA transformylase and the initiation factors IF2 and IF3.Q54612136
P433issue5
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)1012-1026
P577publication date2008-01-21
P1433published inMolecular MicrobiologyQ6895967
P1476titleRequirements for translation re-initiation in Escherichia coli: roles of initiator tRNA and initiation factors IF2 and IF3
P478volume67

Reverse relations

cites work (P2860)
Q34407738An extended Shine-Dalgarno sequence in mRNA functionally bypasses a vital defect in initiator tRNA.
Q57756711Evaluation of 244,000 synthetic sequences reveals design principles to optimize translation in Escherichia coli
Q34328631High confidence prediction of essential genes in Burkholderia cenocepacia
Q34341218Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum
Q50876886Identification of the hcb gene operon involved in catalyzing aerobic hexachlorobenzene dechlorination in Nocardioides sp. strain PD653.
Q38003655Kinetic control of translation initiation in bacteria
Q93133723Translational coupling via termination-reinitiation in archaea and bacteria

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