Phylodynamics of avian influenza clade 2.2.1 H5N1 viruses in Egypt

scientific article published on 22 March 2016

Phylodynamics of avian influenza clade 2.2.1 H5N1 viruses in Egypt is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1047089186
P356DOI10.1186/S12985-016-0477-7
P932PMC publication ID4802640
P698PubMed publication ID27000533
P5875ResearchGate publication ID299338019

P50authorAbdelsatar ArafaQ42842448
P2093author name stringGwenaelle Dauphin
Juan Lubroth
Yilma J Makonnen
Mohammed K Hassan
Ihab El-Masry
Shereen Kholosy
P2860cites workRelaxed phylogenetics and dating with confidenceQ21146068
Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypesQ24538783
BEAST: Bayesian evolutionary analysis by sampling treesQ27860723
Not so different after all: a comparison of methods for detecting amino acid sites under selectionQ28306719
Bayes empirical bayes inference of amino acid sites under positive selectionQ29547692
A statistical phylogeography of influenza A H5N1.Q30011014
Phylogeography of influenza A H5N1 clade 2.2.1.1 in Egypt.Q30356659
Evolutionary dynamics and emergence of panzootic H5N1 influenza viruses.Q30372285
Antigenic and genetic diversity of highly pathogenic avian influenza A (H5N1) viruses isolated in EgyptQ30389960
Acquisition of human-type receptor binding specificity by new H5N1 influenza virus sublineages during their emergence in birds in Egypt.Q30403405
Novel phylogenetic algorithm to monitor human tropism in Egyptian H5N1-HPAIV reveals evolution toward efficient human-to-human transmissionQ30430279
Molecular characterization of avian influenza H5N1 virus in Egypt and the emergence of a novel endemic subclade.Q33761804
Role of specific hemagglutinin amino acids in the immunogenicity and protection of H5N1 influenza virus vaccinesQ33944041
Evidence for differing evolutionary dynamics of A/H5N1 viruses among countries applying or not applying avian influenza vaccination in poultryQ34048703
Antigenic analysis of highly pathogenic avian influenza virus H5N1 sublineages co-circulating in EgyptQ34335343
Antigenic characterization of recent H5N1 highly pathogenic avian influenza viruses circulating in Egyptian poultryQ34466534
Egyptian H5N1 influenza viruses-cause for concern?Q34481825
Avian influenza virus exhibits rapid evolutionary dynamicsQ34562380
Antigenic drift in H5N1 avian influenza virus in poultry is driven by mutations in major antigenic sites of the hemagglutinin molecule analogous to those for human influenza virusQ35192981
Nomenclature updates resulting from the evolution of avian influenza A(H5) virus clades 2.1.3.2a, 2.2.1, and 2.3.4 during 2013-2014Q35628230
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamicsQ35825905
A single amino acid at the hemagglutinin cleavage site contributes to the pathogenicity but not the transmission of Egyptian highly pathogenic H5N1 influenza virus in chickens.Q36760101
Surveillance on A/H5N1 virus in domestic poultry and wild birds in EgyptQ36976092
Sequence diversity of the haemagglutinin open reading frame of recent highly pathogenic avian influenza H5N1 isolates from Egypt.Q38855014
Epidemiological findings of outbreaks of disease caused by highly pathogenic H5N1 avian influenza virus in poultry in Egypt during 2006.Q38871680
Evolution of highly pathogenic avian influenza H5N1 viruses in Egypt indicating progressive adaptation.Q38877994
Phylogenetic analysis of hemagglutinin and neuraminidase genes of highly pathogenic avian influenza H5N1 Egyptian strains isolated from 2006 to 2008 indicates heterogeneity with multiple distinct sublineagesQ38877996
Emergence of a novel cluster of influenza A(H5N1) virus clade 2.2.1.2 with putative human health impact in Egypt, 2014/15.Q38878008
Oseltamivir resistance mutation N294S in human influenza A(H5N1) virus in EgyptQ38981457
Antigenic analysis of H5N1 highly pathogenic avian influenza viruses circulating in Egypt (2006-2012).Q39091944
Revised and updated nomenclature for highly pathogenic avian influenza A (H5N1) virusesQ39259219
Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/96 (H5N1) virus: similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong KongQ42609736
Validated H5 Eurasian real-time reverse transcriptase-polymerase chain reaction and its application in H5N1 outbreaks in 2005-2006.Q43176243
P921main subjectEgyptQ79
avian influenzaQ43987
P304page(s)49
P577publication date2016-03-22
P1433published inVirology JournalQ7934868
P1476titlePhylodynamics of avian influenza clade 2.2.1 H5N1 viruses in Egypt
P478volume13

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cites work (P2860)
Q36272799Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction
Q92071698Estimating Transmission Potential of H5N1 Viruses Among Humans in Egypt Using Phylogeny, Genetic Distance and Sampling Time Interval
Q64093464Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography
Q57003207Molecular identification of avian influenza virus subtypes H5N1 and H9N2 in birds from farms and live bird markets and in respiratory patients
Q89493256Quantitative evaluation of viral interference among Egyptian isolates of highly pathogenic avian influenza viruses (H5N1 and H5N8) with the lentogenic and velogenic Newcastle disease virus genotype VII in specific pathogen-free embryonated chicken e
Q40158310Vaccine immune pressure influences viral population complexity of avian influenza virus during infection

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