scholarly article | Q13442814 |
P50 | author | Gerardo Andrés Cisneros | Q42705793 |
P2093 | author name string | Hao Hu | |
Weitao Yang | |||
Robin Chaudret | |||
Pan Wu | |||
Xiangqian Hu | |||
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All-atom empirical potential for molecular modeling and dynamics studies of proteins | Q27860468 | ||
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4-Oxalocrotonate tautomerase, an enzyme composed of 62 amino acid residues per monomer | Q28213798 | ||
Physically associated enzymes produce and metabolize 2-hydroxy-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida | Q28354983 | ||
Kinetic and stereochemical analysis of YwhB, a 4-oxalocrotonate tautomerase homologue in Bacillus subtilis: mechanistic implications for the YwhB- and 4-oxalocrotonate tautomerase-catalyzed reactions | Q28488962 | ||
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Mechanism of OMP decarboxylation in orotidine 5'-monophosphate decarboxylase | Q30539734 | ||
A stable dimer in the pH-induced equilibrium unfolding of the homo-hexameric enzyme 4-oxalocrotonate tautomerase (4-OT). | Q32067738 | ||
Revealing noncovalent interactions | Q33830576 | ||
Concerted O atom-proton transfer in the O-O bond forming step in water oxidation | Q33842023 | ||
Catalytic role of the amino-terminal proline in 4-oxalocrotonate tautomerase: affinity labeling and heteronuclear NMR studies | Q34062202 | ||
MATCH: an atom-typing toolset for molecular mechanics force fields. | Q34063434 | ||
NCIPLOT: a program for plotting non-covalent interaction regions | Q34822784 | ||
Autocatalytic intramolecular isopeptide bond formation in gram-positive bacterial pili: a QM/MM simulation | Q34844854 | ||
Analysis of hydrogen-bond interaction potentials from the electron density: integration of noncovalent interaction regions. | Q36837200 | ||
QM/MM Minimum Free Energy Path: Methodology and Application to Triosephosphate Isomerase | Q37010676 | ||
Free energies of chemical reactions in solution and in enzymes with ab initio quantum mechanics/molecular mechanics methods | Q37055269 | ||
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Mechanism of Cdc25B phosphatase with the small molecule substrate p-nitrophenyl phosphate from QM/MM-MFEP calculations. | Q37265822 | ||
Calculating solution redox free energies with ab initio quantum mechanical/molecular mechanical minimum free energy path method | Q37330110 | ||
A pseudobond parametrization for improved electrostatics in quantum mechanical/molecular mechanical simulations of enzymes | Q37330116 | ||
Critical role of substrate conformational change in the proton transfer process catalyzed by 4-oxalocrotonate tautomerase. | Q37353149 | ||
Inactivation of 4-oxalocrotonate tautomerase by 2-oxo-3-pentynoate | Q40871721 | ||
Ab initio QM/MM study shows there is no general acid in the reaction catalyzed by 4-oxalocrotonate tautomerase | Q44554799 | ||
The protein backbone makes important contributions to 4-oxalocrotonate tautomerase enzyme catalysis: understanding from theory and experiment | Q44915810 | ||
Electrostatic interactions dominate the catalytic contribution of arg39 in 4-oxalocrotonate tautomerase | Q45093878 | ||
Half-of-the-sites binding of reactive intermediates and their analogues to 4-oxalocrotonate tautomerase and induced structural asymmetry of the enzyme | Q46504015 | ||
Theoretical and experimental determination on two substrates turned over by 4-oxalocrotonate tautomerase | Q46888619 | ||
Quadratic string method for determining the minimum-energy path based on multiobjective optimization | Q46936491 | ||
Quantum chemical modeling of enzymatic reactions: the case of 4-oxalocrotonate tautomerase | Q46975606 | ||
Understanding the enzymatic activity of 4-oxalocrotonate tautomerase and its mutant analogues: a computational study. | Q52573868 | ||
Quantum mechanics/molecular mechanics minimum free-energy path for accurate reaction energetics in solution and enzymes: sequential sampling and optimization on the potential of mean force surface. | Q53551886 | ||
Substrate Orientation in 4-Oxalocrotonate Tautomerase and Its Effect on QM/MM Energy Profiles | Q57397917 | ||
Kinetic, stereochemical, and structural effects of mutations of the active site arginine residues in 4-oxalocrotonate tautomerase | Q73011032 | ||
P433 | issue | 23 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | protein-protein interaction | Q896177 |
P304 | page(s) | 6889-6897 | |
P577 | publication date | 2012-03-28 | |
P1433 | published in | Journal of Physical Chemistry B | Q668669 |
P1476 | title | Catalytic mechanism of 4-oxalocrotonate tautomerase: significances of protein-protein interactions on proton transfer pathways | |
P478 | volume | 116 |
Q47164878 | A half-site multimeric enzyme achieves its cooperativity without conformational changes |
Q39463066 | Multiscale Quantum Mechanics/Molecular Mechanics Simulations with Neural Networks |
Q37037749 | Noncovalent Interaction Analysis in Fluctuating Environments |
Q36597422 | Pseudobond parameters for QM/MM studies involving nucleosides, nucleotides, and their analogs |
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