| P50 | author | Zoe Gill | Q59544248 |
| | Katherine Pollard | Q90391163 |
| | Nadav Ahituv | Q37374381 |
| | Nicola Illing | Q42572458 |
| P2093 | author name string | Lucia Carbone | |
| | Walter L Eckalbar | |
| | Julia E VanderMeer | |
| | Kimberly A Nevonen | |
| | Tara Friedrich | |
| | Stephen A Schlebusch | |
| | Nicola Illing | |
| | Betty M Booker | |
| | Mandy K Mason | |
| | Nadja Makki | |
| | Elizabeth Terhune | |
| | Ash V Parker | |
| | Christiane Muswamba-Nday | |
| | Jeff D Wall | |
| | Sierra Nishizaki | |
| P2860 | cites work | Automated generation of heuristics for biological sequence comparison | Q21061202 |
| | Evolution at two levels: on genes and form | Q21563630 |
| | TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions | Q21999527 |
| | The BMP antagonist Gremlin regulates outgrowth, chondrogenesis and programmed cell death in the developing limb | Q22010774 |
| | A high-resolution map of human evolutionary constraint using 29 mammals | Q22122167 |
| | Identification of a primary target of thalidomide teratogenicity | Q24302178 |
| | Development of bat flight: morphologic and molecular evolution of bat wing digits | Q24546686 |
| | GENCODE: the reference human genome annotation for The ENCODE Project | Q24608743 |
| | Full-length transcriptome assembly from RNA-Seq data without a reference genome | Q24620766 |
| | Histone H3K27ac separates active from poised enhancers and predicts developmental state | Q24628758 |
| | Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 |
| | Regulatory divergence modifies limb length between mammals | Q24677153 |
| | Interdigital webbing retention in bat wings illustrates genetic changes underlying amniote limb diversification | Q24679526 |
| | Basic local alignment search tool | Q25938991 |
| | A pathway to bone: signaling molecules and transcription factors involved in chondrocyte development and maturation | Q26995910 |
| | Fast gapped-read alignment with Bowtie 2 | Q27860699 |
| | Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources | Q27860739 |
| | High-resolution profiling of histone methylations in the human genome | Q27860906 |
| | The Sequence Alignment/Map format and SAMtools | Q27860966 |
| | Unique expression patterns of multiple key genes associated with the evolution of mammalian flight. | Q51455547 |
| | Biomechanics of the bat limb skeleton: scaling, material properties and mechanics. | Q51696985 |
| | FGF-2 induces regeneration of the chick limb bud | Q72401351 |
| | The role of early development in mammalian limb diversification: a descriptive comparison of early limb development between the Natal long-fingered bat (Miniopterus natalensis) and the mouse (Mus musculus) | Q83409468 |
| | Evaluation of Maternal Features as Indicators of Asynchronous Embryonic Development inMiniopterus natalensis | Q93437827 |
| | Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists | Q28131785 |
| | Mechanisms of GDF-5 action during skeletal development | Q28137591 |
| | The roles of FGFs in the early development of vertebrate limbs | Q28273288 |
| | Msx genes are important apoptosis effectors downstream of the Shh/Gli3 pathway in the limb | Q28507971 |
| | Tbx5 is essential for forelimb bud initiation following patterning of the limb field in the mouse embryo | Q28586325 |
| | The mouse short ear skeletal morphogenesis locus is associated with defects in a bone morphogenetic member of the TGF beta superfamily | Q28586944 |
| | Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning | Q28591034 |
| | Tbx5 is required for forelimb bud formation and continued outgrowth | Q28591196 |
| | Mouse Af9 is a controller of embryo patterning, like Mll, whose human homologue fuses with Af9 after chromosomal translocation in leukemia | Q28594037 |
| | Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus | Q28601851 |
| | Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii | Q28681454 |
| | A second wave of Sonic hedgehog expression during the development of the bat limb | Q28756609 |
| | Trimmomatic: a flexible trimmer for Illumina sequence data | Q29547278 |
| | BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 |
| | Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 | Q29547403 |
| | CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes | Q29547486 |
| | Aligning multiple genomic sequences with the threaded blockset aligner | Q29547490 |
| | A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression | Q29614326 |
| | A unique chromatin signature uncovers early developmental enhancers in humans | Q29614327 |
| | The significance of digital gene expression profiles | Q29614357 |
| | HTSeq--a Python framework to work with high-throughput sequencing data | Q29614489 |
| | GREAT improves functional interpretation of cis-regulatory regions | Q29614846 |
| | SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap | Q29614907 |
| | FLASH: fast length adjustment of short reads to improve genome assemblies | Q29615113 |
| | SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler | Q29616805 |
| | Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies | Q29617550 |
| | Detection of nonneutral substitution rates on mammalian phylogenies | Q30080028 |
| | A clustering approach for identification of enriched domains from histone modification ChIP-Seq data | Q33464035 |
| | Digital gene expression tag profiling of bat digits provides robust candidates contributing to wing formation. | Q33740004 |
| | PHAST and RPHAST: phylogenetic analysis with space/time models | Q33806905 |
| | A strand-specific library preparation protocol for RNA sequencing | Q34029792 |
| | MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects | Q34109062 |
| | Comparative analysis of bat genomes provides insight into the evolution of flight and immunity | Q34318927 |
| | lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs | Q34444320 |
| | FastUniq: a fast de novo duplicates removal tool for paired short reads | Q34533452 |
| | RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation | Q35159261 |
| | The LIM-homeobox gene Lhx8 is required for the development of many cholinergic neurons in the mouse forebrain | Q35171430 |
| | Retinoic acid-independent expression of Meis2 during autopod patterning in the developing bat and mouse limb | Q35312602 |
| | CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. | Q35914259 |
| | BEDOPS: high-performance genomic feature operations | Q36076319 |
| | Planar cell polarity in vertebrate limb morphogenesis. | Q37138322 |
| | Diamond Blackfan anemia | Q37967332 |
| | The evolution and development of mammalian flight | Q38116921 |
| | To BMP or not to BMP during vertebrate limb bud development. | Q38203439 |
| | Wnt5a and Wnt11 inhibit the canonical Wnt pathway and promote cardiac progenitor development via the Caspase-dependent degradation of AKT. | Q38931420 |
| | Divide, accumulate, differentiate: cell condensation in skeletal development revisited | Q40963233 |
| | AUGUSTUS: a web server for gene finding in eukaryotes | Q41010645 |
| | mTORC2 signaling promotes skeletal growth and bone formation in mice | Q41944527 |
| | Lrrn1 is required for formation of the midbrain-hindbrain boundary and organiser through regulation of affinity differences between midbrain and hindbrain cells in chick. | Q42723802 |
| | Expression pattern of LRR and Ig domain-containing protein (LRRIG protein) in the early mouse embryo | Q44666301 |
| | Fgf signaling components are associated with muscles and tendons during limb development | Q47965056 |
| P275 | copyright license | Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported | Q15643954 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 5 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | transcriptome | Q252857 |
| | RNA sequencing | Q2542347 |
| P304 | page(s) | 528-536 | |
| P577 | publication date | 2016-03-28 | |
| P1433 | published in | Nature Genetics | Q976454 |
| P1476 | title | Transcriptomic and epigenomic characterization of the developing bat wing | |
| P478 | volume | 48 | |