Congruence of in vivo and in vitro insertion patterns in hot E. coli gene targets of transposable element Mu: opposing roles of MuB in target capture and integration

scientific article published on 20 May 2008

Congruence of in vivo and in vitro insertion patterns in hot E. coli gene targets of transposable element Mu: opposing roles of MuB in target capture and integration is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/J.JMB.2008.05.032
P932PMC publication ID2529481
P698PubMed publication ID18556020
P5875ResearchGate publication ID5300800

P2093author name stringRasika M Harshey
Jun Ge
P2860cites workTn10 insertion specificity is strongly dependent upon sequences immediately adjacent to the target-site consensus sequenceQ24564196
DNA transposition target immunity and the determinants of the MuB distribution patterns on DNAQ30479923
An ATP-ADP switch in MuB controls progression of the Mu transposition pathwayQ33889534
Mu and IS1 transpositions exhibit strong orientation bias at the Escherichia coli bgl locusQ34011834
Dynamics of a protein polymer: the assembly and disassembly pathways of the MuB transposition target complexQ34086159
Chromosomal integration mechanism of infecting mu virion DNA.Q34509962
Insertion site preferences of the P transposable element in Drosophila melanogasterQ35109923
HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modificationsQ35914779
Specificity of mini-Mu bacteriophage insertions in a small plasmidQ36130321
Structure and mechanism of Escherichia coli RecA ATPaseQ36272177
BACTERIOPHAGE-INDUCED MUTATION IN ESCHERICHIA COLIQ36402297
Microarray analysis of transposition targets in Escherichia coli: the impact of transcriptionQ36448960
Tn7: a target site-specific transposonQ36460746
A domain sharing model for active site assembly within the Mu A tetramer during transposition: the enhancer may specify domain contributions.Q37697577
Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: transposon exclusion by high-density DNA binding proteinsQ38298379
'Muprints' of the lac operon demonstrate physiological control over the randomness of in vivo transpositionQ38308702
Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays.Q38335816
Steady-state kinetic analysis of ATP hydrolysis by the B protein of bacteriophage mu. Involvement of protein oligomerization in the ATPase cycleQ41152029
Target site selection in transpositionQ41550231
Bacteriophage Mu targets the trinucleotide sequence CGG.Q42754922
Two mutations of phage mu transposase that affect strand transfer or interactions with B protein lie in distinct polypeptide domainsQ43431153
Direct observation of single MuB polymers: evidence for a DNA-dependent conformational change for generating an active target complexQ44017740
Targeting transposition: at home in the genomeQ46207623
Visualizing the assembly and disassembly mechanisms of the MuB transposition targeting complexQ47209889
Tn7 transposes proximal to DNA double-strand breaks and into regions where chromosomal DNA replication terminatesQ64388355
Target immunity of Mu transposition reflects a differential distribution of Mu B proteinQ70051723
Target site selection in transposition of phage MuQ72794146
Substrate recognition and induced DNA deformation by transposase at the target-capture stage of Tn10 transpositionQ73053743
Path of DNA within the Mu transpososome. Transposase interactions bridging two Mu ends and the enhancer trap five DNA supercoilsQ74371900
Yeast retrotransposons: finding a nice quiet neighborhoodQ74764328
DNA transposition of bacteriophage Mu. A quantitative analysis of target site selection in vitroQ77144854
Importance of the conserved CA dinucleotide at Mu terminiQ77642670
Target immunity during Mu DNA transposition. Transpososome assembly and DNA looping enhance MuA-mediated disassembly of the MuB target complexQ78723573
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)598-607
P577publication date2008-05-20
P1433published inJournal of Molecular BiologyQ925779
P1476titleCongruence of in vivo and in vitro insertion patterns in hot E. coli gene targets of transposable element Mu: opposing roles of MuB in target capture and integration
P478volume380

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cites work (P2860)
Q37017245Analysis of phage Mu DNA transposition by whole-genome Escherichia coli tiling arrays reveals a complex relationship to distribution of target selection protein B, transcription and chromosome architectural elements.
Q44292887Characterization of a newly discovered Mu-like bacteriophage, RcapMu, in Rhodobacter capsulatus strain SB1003.
Q97520440Deep sequencing reveals new roles for MuB in transposition immunity and target-capture, and redefines the insular Ter region of E. coli
Q33846374Genomic, proteomic and bioinformatic analysis of two temperate phages in Roseobacter clade bacteria isolated from the deep-sea water
Q33724108Immunity of replicating Mu to self-integration: a novel mechanism employing MuB protein.
Q47719165Separate structural and functional domains of Tn4430 transposase contribute to target immunity
Q35801161Transposable Phage Mu
Q42254966Transposable prophage Mu is organized as a stable chromosomal domain of E. coli.

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