Differences in the Access of Lesions to the Nucleotide Excision Repair Machinery in Nucleosomes

scientific article published on 30 June 2015

Differences in the Access of Lesions to the Nucleotide Excision Repair Machinery in Nucleosomes is …
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scholarly articleQ13442814

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P356DOI10.1021/ACS.BIOCHEM.5B00564
P932PMC publication ID4862310
P698PubMed publication ID26091016

P50authorSuse BroydeQ41508315
Chryssostomos ChatgilialogluQ43054315
Vladimir ShafirovichQ43191092
Michael A TerzidisQ57120394
Annalisa MasiQ57310305
P2093author name stringNicholas E Geacintov
Yuqin Cai
Konstantin Kropachev
P2860cites workThe Protein Data BankQ24515306
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Structure and Stability of Duplex DNA Containing (5′ S )-5′,8-Cyclo-2′-deoxyadenosine: An Oxidatively Generated Lesion Repaired by NERQ27671744
Structure of (5′ S )-8,5′-Cyclo-2′-deoxyguanosine in DNAQ27675728
Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCGQ27729236
3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structuresQ27860547
ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleosomesQ28362241
Structural basis for the recognition of diastereomeric 5',8-cyclo-2'-deoxypurine lesions by the human nucleotide excision repair systemQ30579562
Removal of oxygen free-radical-induced 5',8-purine cyclodeoxynucleosides from DNA by the nucleotide excision-repair pathway in human cellsQ30856746
DNA damage in the nucleosome core is refractory to repair by human excision nucleaseQ30969773
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The 8,5'-cyclopurine-2'-deoxynucleosides: candidate neurodegenerative DNA lesions in xeroderma pigmentosum, and unique probes of transcription and nucleotide excision repairQ33554002
Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active geneQ33887313
DNA repair of a single UV photoproduct in a designed nucleosomeQ33942985
UV damage in DNA promotes nucleosome unwrappingQ34074380
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A Bulky DNA Lesion Derived from a Highly Potent Polycyclic Aromatic Tumorigen Stabilizes Nucleosome Core Particle StructureQ34345579
Resistance of bulky DNA lesions to nucleotide excision repair can result from extensive aromatic lesion-base stacking interactionsQ35468354
Nucleosome rearrangement in human chromatin during UV-induced DNA- reapir synthesisQ35989834
DNA damage can alter the stability of nucleosomes: effects are dependent on damage typeQ36034321
The oxidative DNA lesions 8,5'-cyclopurines accumulate with aging in a tissue-specific mannerQ36103490
Molecular mechanisms of mammalian global genome nucleotide excision repair.Q36389623
Solution conformation of the major adduct between the carcinogen (+)-anti-benzo[a]pyrene diol epoxide and DNAQ36868866
A 1,2-d(GpG) cisplatin intrastrand cross-link influences the rotational and translational setting of DNA in nucleosomesQ37336683
Purine 5',8-cyclonucleoside lesions: chemistry and biologyQ37827361
Accommodation and repair of a UV photoproduct in DNA at different rotational settings on the nucleosome surfaceQ38320208
Repair efficiency of (5'S)-8,5'-cyclo-2'-deoxyguanosine and (5'S)-8,5'-cyclo-2'-deoxyadenosine depends on the complementary baseQ38320847
Nucleotide excision repair of DNA by human cell extracts is suppressed in reconstituted nucleosomesQ41656374
Nucleotide excision repair of the 5 S ribosomal RNA gene assembled into a nucleosomeQ48890771
Solution conformation of the (+)-cis-anti-[BP]dG adduct in a DNA duplex: intercalation of the covalently attached benzo[a]pyrenyl ring into the helix and displacement of the modified deoxyguanosine.Q51653035
Nucleotide excision repair from site-specifically platinum-modified nucleosomes.Q51836720
Modulation of DNA damage and DNA repair in chromatin.Q53937922
DNA Damage and Radical Reactions: Mechanistic Aspects, Formation in Cells and Repair StudiesQ57976709
Unrepaired fjord region polycyclic aromatic hydrocarbon-DNA adducts in ras codon 61 mutational hot spotsQ73679023
The oxidative DNA lesion 8,5'-(S)-cyclo-2'-deoxyadenosine is repaired by the nucleotide excision repair pathway and blocks gene expression in mammalian cellsQ73763148
P433issue27
P407language of work or nameEnglishQ1860
P304page(s)4181-4185
P577publication date2015-06-30
P1433published inBiochemistryQ764876
P1476titleDifferences in the Access of Lesions to the Nucleotide Excision Repair Machinery in Nucleosomes
P478volume54