scholarly article | Q13442814 |
P2093 | author name string | David Hyde-Volpe | |
Dev P Arya | |||
Nihar Ranjan | |||
Liang Xue | |||
Hongjuan Xi | |||
Erik Davis | |||
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Reaching into the Major Groove of B-DNA: Synthesis and Nucleic Acid Binding of a Neomycin−Hoechst 33258 Conjugate | Q33193738 | ||
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water | Q33211287 | ||
Neomycin-neomycin dimer: an all-carbohydrate scaffold with high affinity for AT-rich DNA duplexes | Q33882762 | ||
Structural origins of gentamicin antibiotic action | Q33889995 | ||
DNA triple helix stabilization by aminoglycoside antibiotics | Q33917870 | ||
Neomycin-induced hybrid triplex formation | Q34099779 | ||
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Salt-induced co-operative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-dC) | Q34227119 | ||
Complete thermodynamic characterization of the multiple protonation equilibria of the aminoglycoside antibiotic paromomycin: a calorimetric and natural abundance 15N NMR study. | Q34354156 | ||
Origins of netropsin binding affinity and specificity: correlations of thermodynamic and structural data | Q34633749 | ||
Intramolecular folding of a fragment of the cytosine-rich strand of telomeric DNA into an i-motif | Q34826205 | ||
Evidence for intramolecularly folded i-DNA structures in biologically relevant CCC-repeat sequences | Q34892950 | ||
DNA shape, genetic codes, and evolution | Q35038701 | ||
Molecular recognition of aminoglycoside antibiotics by ribosomal RNA and resistance enzymes: an analysis of x-ray crystal structures | Q35202540 | ||
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Competition dialysis: an assay to measure the structural selectivity of drug-nucleic acid interactions. | Q36230269 | ||
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Modifications of aminoglycoside antibiotics targeting RNA. | Q36558059 | ||
Competition dialysis: a method for the study of structural selective nucleic acid binding | Q36808320 | ||
The triple helix: 50 years later, the outcome | Q36868459 | ||
A hitchhiker's guide to G-quadruplex ligands | Q37080928 | ||
Local DNA topography correlates with functional noncoding regions of the human genome | Q37358871 | ||
Energetics of echinomycin binding to DNA. | Q37369127 | ||
Unique structures formed by pyrimidine-purine DNAs which may be four-stranded | Q37582906 | ||
Calorimetric and spectroscopic studies of aminoglycoside binding to AT-rich DNA triple helices | Q37687501 | ||
Apparent heat capacity change accompanying a nonspecific protein-DNA interaction. Escherichia coli SSB tetramer binding to oligodeoxyadenylates | Q38302921 | ||
Energetic basis of molecular recognition in a DNA aptamer | Q38310589 | ||
Heat capacity effects of water molecules and ions at a protein-DNA interface | Q38342257 | ||
Role of the hydrophobic effect in stability of site-specific protein-DNA complexes | Q38343324 | ||
Unusual intercalation of acridin-9-ylthiourea into the 5'-GA/TC DNA base step from the minor groove: implications for the covalent DNA adduct profile of a novel platinum-intercalator conjugate | Q38352682 | ||
Molecular recognition of single-stranded RNA: neomycin binding to poly(A). | Q38353239 | ||
Coupling of drug protonation to the specific binding of aminoglycosides to the A site of 16 S rRNA: elucidation of the number of drug amino groups involved and their identities | Q38357489 | ||
Mutagenesis in mammalian cells induced by triple helix formation and transcription-coupled repair | Q38361773 | ||
Neomycin, spermine and hexaamminecobalt (III) share common structural motifs in converting B- to A-DNA. | Q39715530 | ||
Aminoglycoside Binding toOxytricha novaTelomeric DNA | Q39831843 | ||
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Hairpin and parallel quartet structures for telomeric sequences. | Q40533496 | ||
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DNA H form requires a homopurine-homopyrimidine mirror repeat. | Q41333032 | ||
Biophysical studies of the c-MYC NHE III1 promoter: model quadruplex interactions with a cationic porphyrin | Q42183649 | ||
Aminoglycoside-nucleic acid interactions: remarkable stabilization of DNA and RNA triple helices by neomycin | Q43628186 | ||
Quadruplex structure of Oxytricha telomeric DNA oligonucleotides | Q43784662 | ||
Conserved guanine-guanine stacking in tetraplex and duplex DNA. | Q43871986 | ||
Spectroscopic and thermodynamic studies on the binding of sanguinarine and berberine to triple and double helical DNA and RNA structures | Q44366443 | ||
Netropsin binding to polyd(AT) X polyd(AT) and to polydA X polydT: a comparative thermodynamic study | Q44410110 | ||
Aminoglycoside complexation with a DNA.RNA hybrid duplex: the thermodynamics of recognition and inhibition of RNA processing enzymes. | Q44465148 | ||
Aminoglycoside (neomycin) preference is for A-form nucleic acids, not just RNA: results from a competition dialysis study | Q44554731 | ||
From triplex to B-form duplex stabilization: reversal of target selectivity by aminoglycoside dimers | Q45026916 | ||
Thermodynamics of DNA binding and distortion by the hyperthermophile chromatin protein Sac7d | Q45081127 | ||
Letter to the editor: The polyuridylic acid complex with polyamines: an x-ray fiber diffraction observation | Q45281180 | ||
Proton nuclear magnetic resonance assignments and structural characterization of an intramolecular DNA triplex | Q46116578 | ||
Molecular recognition of a DNA:RNA hybrid: sub-nanomolar binding by a neomycin-methidium conjugate | Q46523371 | ||
Molecular recognition of nucleic acids: coralyne binds strongly to poly(A). | Q46672072 | ||
IR vibrational CD in model deoxyoligonucleotides: observation of the B----Z phase transition and extended coupled oscillator intensity calculations. | Q52513062 | ||
Theoretical calculations of the helix-coil transition of DNA in the presence of large, cooperatively binding ligands | Q52847855 | ||
Aminoglycoside binding in the major groove of duplex RNA: the thermodynamic and electrostatic forces that govern recognition | Q57015862 | ||
Tandem Application of Virtual Screening and NMR Experiments in the Discovery of Brand New DNA Quadruplex Groove Binders | Q58043828 | ||
Multisite Modification of Neomycin B: Combined Mitsunobu and Click Chemistry Approach | Q59710827 | ||
DNA solution conformation via infrared circular dichroism: experimental and theoretical results for B-family polymers | Q68577435 | ||
Differential effects on the B-to-Z transition of poly(dG-me5dC).poly(dG-me5dC) produced by N1- and N8-acetyl spermidine | Q70105471 | ||
Studies on the conformation of nucleosides, dinucleoside monophosphates and homopolynucleotides containing uracil or thymine base residues, and ribose, deoxyribose or 2'-O-methylribose | Q70652248 | ||
Berenil binding to higher ordered nucleic acid structures: complexation with a DNA and RNA triple helix | Q70782845 | ||
Polynucleotide polymorphism in solution | Q71069342 | ||
Bromination stabilizes poly(dG-dC) in the Z-DNA form under low-salt conditions | Q71255365 | ||
Nucleic acids and polynucleotides | Q71263436 | ||
Sequence specific thermodynamic and structural properties for DNA.RNA duplexes | Q71621842 | ||
Physicochemical studies on polydeoxyribonucleotides containing defined repeating nucleotide sequences | Q71622711 | ||
Polyamine induced Z-conformation of native calf thymus DNA | Q71889962 | ||
Specificity of the three-stranded complex formation between double-stranded DNA and single-stranded RNA containing repeating nucleotide sequences | Q72326777 | ||
Infrared study of helix strandedness in the poly A-poly U system | Q72572117 | ||
Polynucleotides. VII. Spectrophotometric study of the kinetics of formation of the two-stranded helical complex resulting from the interaction of polyriboadenylate and polyribouridylate | Q72918263 | ||
Neomycin binding to Watson-Hoogsteen (W-H) DNA triplex groove: a model | Q73172108 | ||
Sequence and structural selectivity of nucleic acid binding ligands | Q73248196 | ||
Inhibition of human telomerase by a G-quadruplex-interactive compound | Q73497038 | ||
Combining the best in triplex recognition: synthesis and nucleic acid binding of a BQQ-neomycin conjugate | Q73598323 | ||
Measurement of protein interaction bioenergetics: application to structural variants of anti-sCD4 antibody | Q74178218 | ||
P433 | issue | 42 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | thermodynamics | Q11473 |
P304 | page(s) | 9088-9113 | |
P577 | publication date | 2011-10-03 | |
P1433 | published in | Biochemistry | Q764876 |
P1476 | title | Thermodynamics of nucleic acid "shape readout" by an aminosugar | |
P478 | volume | 50 |
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