Brownian dynamics and molecular dynamics study of the association between hydrogenase and ferredoxin from Chlamydomonas reinhardtii

scientific article published on 11 July 2008

Brownian dynamics and molecular dynamics study of the association between hydrogenase and ferredoxin from Chlamydomonas reinhardtii is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1529/BIOPHYSJ.107.127548
P932PMC publication ID2553122
P698PubMed publication ID18621810
P5875ResearchGate publication ID5230335

P50authorMaria L GhirardiQ85235439
P2093author name stringChristopher H Chang
Kwiseon Kim
Paul W King
Hai Long
P2860cites workElectrostatics of nanosystems: application to microtubules and the ribosomeQ24555224
Hydrogen production. Green algae as a source of energyQ24679342
H++: a server for estimating pKas and adding missing hydrogens to macromoleculesQ24813167
Refined X-ray structures of the oxidized, at 1.3 A, and reduced, at 1.17 A, [2Fe-2S] ferredoxin from the cyanobacterium Anabaena PCC7119 show redox-linked conformational changesQ27620923
Crystal structure of paprika ferredoxin-NADP+ reductase. Implications for the electron transfer pathwayQ27627711
Structure of the electron transfer complex between ferredoxin and ferredoxin-NADP(+) reductaseQ27629524
All-atom empirical potential for molecular modeling and dynamics studies of proteinsQ27860468
VMD: visual molecular dynamicsQ27860554
Scalable molecular dynamics with NAMDQ27860718
Brownian dynamics simulations of aldolase binding glyceraldehyde 3-phosphate dehydrogenase and the possibility of substrate channelingQ28365691
Atomic resolution modeling of the ferredoxin:[FeFe] hydrogenase complex from Chlamydomonas reinhardtiiQ28756880
Functional studies of [FeFe] hydrogenase maturation in an Escherichia coli biosynthetic systemQ28768195
Autotrophic and mixotrophic hydrogen photoproduction in sulfur-deprived chlamydomonas cellsQ28769150
pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic modelQ29302657
Calculation of hydrodynamic properties of globular proteins from their atomic-level structureQ29620591
Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtiiQ33886285
A novel type of iron hydrogenase in the green alga Scenedesmus obliquus is linked to the photosynthetic electron transport chain.Q33926535
Long-range electron transferQ33928458
Microalgae: a green source of renewable H(2).Q34096134
Hydrogenases: hydrogen-activating enzymesQ34121099
Brownian dynamics study of the interaction between plastocyanin and cytochrome fQ34169503
Free energy landscapes of encounter complexes in protein-protein associationQ34169869
Theoretical investigations on Azotobacter vinelandii ferredoxin I: effects of electron transfer on protein dynamicsQ34185199
Open questions in ferredoxin‐NADP+ reductase catalytic mechanismQ34192164
Visualization of transient encounter complexes in protein-protein association.Q34575140
Biomolecular diffusional associationQ34604758
Structure-function relationships in Anabaena ferredoxin/ferredoxin:NADP(+) reductase electron transfer: insights from site-directed mutagenesis, transient absorption spectroscopy and X-ray crystallographyQ34659488
Oxygen sensitivity of algal H2- productionQ34788663
Energy landscape and transition state of protein-protein associationQ35633013
The photobiological production of hydrogen: potential efficiency and effectiveness as a renewable fuelQ36102148
Perspectives and advances of biological H2 production in microorganismsQ36560295
Photosynthesis as a power supply for (bio-)hydrogen productionQ36618380
Hydrogenases and hydrogen photoproduction in oxygenic photosynthetic organisms.Q36675470
Kinetics of protein-protein association explained by Brownian dynamics computer simulationQ36949476
Brownian dynamics simulation of protein-protein diffusional encounterQ40860732
Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculinQ41683966
Simulation of the diffusional association of barnase and barstar.Q41836033
Diffusional encounter of barnase and barstarQ42150613
Protein phosphorylation and intermolecular electron transfer: a joint experimental and computational study of a hormone biosynthesis pathwayQ42426534
Dynamic docking and electron transfer between Zn-myoglobin and cytochrome b(5).Q44024081
Effects of extracellular pH on the metabolic pathways in sulfur-deprived, H2-producing Chlamydomonas reinhardtii cultures.Q44333839
Expression of two [Fe]-hydrogenases in Chlamydomonas reinhardtii under anaerobic conditionsQ44489224
A structural basis of Equisetum arvense ferredoxin isoform II producing an alternative electron transfer with ferredoxin-NADP+ reductase.Q45129832
Anaerobic acclimation in Chlamydomonas reinhardtii: anoxic gene expression, hydrogenase induction, and metabolic pathwaysQ45183330
Genomics of green algal hydrogen researchQ46105876
Inhibitor studies on non-photochemical plastoquinone reduction and H(2) photoproduction in Chlamydomonas reinhardtii.Q46541418
The regulation of photosynthetic electron transport during nutrient deprivation in Chlamydomonas reinhardtiiQ46757390
Purification of Hydrogenase from Chlamydomonas reinhardtiiQ47932499
Free Energy Landscape of Protein-Protein Encounter Resulting from Brownian Dynamics Simulations of Barnase:Barstar.Q51633346
Biochemical and morphological characterization of sulfur-deprived and H2-producing Chlamydomonas reinhardtii (green alga).Q51722199
Nature of biological electron transferQ52425454
Isolation, characterization and N-terminal amino acid sequence of hydrogenase from the green alga Chlamydomonas reinhardtii.Q52518017
Protein-protein association: investigation of factors influencing association rates by Brownian dynamics simulationsQ57975313
Residue Glu-91 of Chlamydomonas reinhardtii ferredoxin is essential for electron transfer to ferredoxin-thioredoxin reductaseQ58383070
Ferredoxin binding site on ferredoxin: NADP+ reductase. Differential chemical modification of free and ferredoxin-bound enzymeQ72911738
Critical residues of Chlamydomonas reinhardtii ferredoxin for interaction with nitrite reductase and glutamate synthase revealed by site-directed mutagenesisQ74038292
Hydrogenases in green algae: do they save the algae's life and solve our energy problems?Q74244331
A density functional theory study on the active center of Fe-only hydrogenase: characterization and electronic structure of the redox statesQ78023873
Lysozyme dimerization: Brownian dynamics simulationQ81140773
P433issue8
P407language of work or nameEnglishQ1860
P921main subjectChlamydomonas reinhardtiiQ291827
P304page(s)3753-3766
P577publication date2008-07-11
P1433published inBiophysical JournalQ2032955
P1476titleBrownian dynamics and molecular dynamics study of the association between hydrogenase and ferredoxin from Chlamydomonas reinhardtii
P478volume95

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cites work (P2860)
Q52335296A Multiscale Computational Model for Simulating the Kinetics of Protein Complex Assembly.
Q42948182Detection of the Photosystem I:Ferredoxin Complex by Backscattering Interferometry
Q39377484Evolution of Chlamydomonas reinhardtii ferredoxins and their interactions with [FeFe]-hydrogenases
Q28299909Identification of global ferredoxin interaction networks in Chlamydomonas reinhardtii
Q33763290Insulation of a synthetic hydrogen metabolism circuit in bacteria
Q28241565Organization of intracellular reactions with rationally designed RNA assemblies
Q36879794Potential for green microalgae to produce hydrogen, pharmaceuticals and other high value products in a combined process
Q33572785Predicting Protein-protein Association Rates using Coarse-grained Simulation and Machine Learning
Q27700903Structural Insight into the Complex of Ferredoxin and [FeFe] Hydrogenase from Chlamydomonas reinhardtii
Q33796500Understanding ligand-receptor non-covalent binding kinetics using molecular modeling.
Q35674131[Fe-Fe]-hydrogenase Reactivated by Residue Mutations as Bridging Carbonyl Rearranges: A QM/MM Study

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