Nucleosome assembly and epigenetic inheritance

scientific article published on September 2010

Nucleosome assembly and epigenetic inheritance is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.1007/S13238-010-0104-0
P932PMC publication ID4875226
P698PubMed publication ID21203924

P2093author name stringBing Zhu
Mo Xu
P2860cites workRequirement of RSF and FACT for transcription of chromatin templates in vitroQ22008503
Translating the Histone CodeQ22065840
Crystal structure of the nucleosome core particle at 2.8 A resolutionQ22122355
Human DNA-(Cytosine-5) Methyltransferase-PCNA Complex as a Target for p21WAF1Q22299424
Regulation of chromatin structure by site-specific histone H3 methyltransferasesQ24290115
Functional cooperation between FACT and MCM helicase facilitates initiation of chromatin DNA replicationQ24299558
Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesisQ24304348
Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4Q24313176
The Williams syndrome transcription factor interacts with PCNA to target chromatin remodelling by ISWI to replication fociQ24314820
The p150 and p60 subunits of chromatin assembly factor I: a molecular link between newly synthesized histones and DNA replicationQ24317200
An ACF1-ISWI chromatin-remodeling complex is required for DNA replication through heterochromatinQ24318717
Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencingQ24536235
A CAF-1-PCNA-mediated chromatin assembly pathway triggered by sensing DNA damageQ24554315
Mutation in a heterochromatin-specific chromosomal protein is associated with suppression of position-effect variegation in Drosophila melanogasterQ24556518
Silencing of chromatin assembly factor 1 in human cells leads to cell death and loss of chromatin assembly during DNA synthesisQ24599870
CBP/p300-mediated acetylation of histone H3 on lysine 56Q24657910
Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replicationQ24675218
The Methyl-CpG Binding Protein MBD1 Interacts with the p150 Subunit of Chromatin Assembly Factor 1Q24682856
Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assemblyQ43111741
Transdetermination in CellsQ43792839
In vitro replication through nucleosomes without histone displacementQ44727774
The Ino80 chromatin-remodeling enzyme regulates replisome function and stability.Q45739139
Structure of chromatin at deoxyribonucleic acid replication forks: prenucleosomal deoxyribonucleic acid is rapidly excised from replicating simian virus 40 chromosomes by micrococcal nucleaseQ45801140
Dispersive segregation of nucleosomes during replication of simian virus 40 chromosomesQ45807372
Structure of replicating simian virus 40 minichromosomes. The replication fork, core histone segregation and terminal structuresQ45835765
Chromatin structure; oligomers of the histonesQ47873595
Divided loyalties: transdetermination and the genetics of tissue regeneration.Q50937884
Flexible filaments in a flowing soap film as a model for one-dimensional flags in a two-dimensional wind.Q52069806
Modifications of H3 and H4 during chromatin replication, nucleosome assembly, and histone exchange.Q55041606
Replication Stress Interferes with Histone Recycling and Predeposition Marking of New HistonesQ57824404
In vivo studies on the dynamics of histone-DNA interaction: evidence for nucleosome dissolution during replication and transcription and a low level of dissolution independent of bothQ67658601
The fate of parental nucleosomes during SV40 DNA replicationQ67853529
Studies on the mode of segregation of histone nu bodies during replication in HeLa cellsQ67863614
Conservative segregation of tetrameric units of H3 and H4 histones during nucleosome replicationQ68768222
Deposition of newly synthesized histones: new histones H2A and H2B do not deposit in the same nucleosome with new histones H3 and H4Q69200945
Histone segregation on replicating chromatinQ69974505
Nucleosome segregation in chromatin replicated in the presence of cycloheximideQ70406701
Organ-specific restriction of transcription in mammalian chromatinQ72329358
Defective S phase chromatin assembly causes DNA damage, activation of the S phase checkpoint, and S phase arrestQ73086545
Structure and function of the histone chaperone CIA/ASF1 complexed with histones H3 and H4Q27643806
The FACT Spt16 “peptidase” domain is a histone H3–H4 binding moduleQ27650951
Role of the polycomb protein EED in the propagation of repressive histone marksQ27657483
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteinsQ27860456
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domainQ27860477
The structure of the yFACT Pob3-M domain, its interaction with the DNA replication factor RPA, and a potential role in nucleosome depositionQ27930931
Acetylation of histone H3 lysine 56 regulates replication-coupled nucleosome assemblyQ27932260
POB3 is required for both transcription and replication in the yeast Saccharomyces cerevisiaeQ27932868
RLF2, a subunit of yeast chromatin assembly factor-I, is required for telomeric chromatin function in vivoQ27932921
GINS maintains association of Cdc45 with MCM in replisome progression complexes at eukaryotic DNA replication forksQ27934889
Rtt109 acetylates histone H3 lysine 56 and functions in DNA replicationQ27935707
The silencing complex SAS-I links histone acetylation to the assembly of repressed chromatin by CAF-I and Asf1 in Saccharomyces cerevisiaeQ27937419
Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activationQ27937778
Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosisQ27938401
Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I.Q27939747
Replication-dependent marking of DNA by PCNA facilitates CAF-1-coupled inheritance of chromatinQ28138029
FACT facilitates transcription-dependent nucleosome alterationQ28203107
Proliferating cell nuclear antigen associates with histone deacetylase activity, integrating DNA replication and chromatin modificationQ28212387
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAiQ28218870
Regulation of replication fork progression through histone supply and demandQ28261912
FACT, a factor that facilitates transcript elongation through nucleosomesQ28263754
Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assemblyQ28278522
The stability of nucleosomes at the replication forkQ28278551
Reversal of histone methylation: biochemical and molecular mechanisms of histone demethylasesQ28278969
Polycomb silencing mechanisms and the management of genomic programmesQ28279277
Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tailQ28297786
ATP-dependent chromatin remodeling shapes the DNA replication landscapeQ28754502
Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assemblyQ29614718
A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nucleiQ29616800
Functions of site-specific histone acetylation and deacetylationQ29617894
Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expressionQ29619380
Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stabilityQ29620365
A model for transmission of the H3K27me3 epigenetic markQ39927750
A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylationQ40097842
The asymmetric segregation of parental nucleosomes during chromosome replicationQ40266129
Histone acetyltransferase 1 is dispensable for replication-coupled chromatin assembly but contributes to recover DNA damages created following replication blockage in vertebrate cellsQ40273789
The histone chaperone ASF1 localizes to active DNA replication forks to mediate efficient DNA replicationQ40333339
Human DNA methyltransferase 1 is required for maintenance of the histone H3 modification patternQ40541198
Transfer of nucleosomes from parental to replicated chromatinQ40642551
DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clustersQ40680783
Disruption of the nucleosomes at the replication forkQ40874996
Electron microscopic analysis of chromatin replication in the cellular blastoderm drosophila melanogaster embryoQ41337617
Incorporation of exogenous pyrene-labeled histone into Physarum chromatin: a system for studying changes in nucleosomes assembled in vivoQ42272960
Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexesQ42850451
Establishment of histone modifications after chromatin assemblyQ43064142
ASF1 binds to a heterodimer of histones H3 and H4: a two-step mechanism for the assembly of the H3-H4 heterotetramer on DNAQ30393940
The HMG protein T160 colocalizes with DNA replication foci and is down-regulated during cell differentiationQ30739013
FASCIATA genes for chromatin assembly factor-1 in arabidopsis maintain the cellular organization of apical meristemsQ33335316
In vivo residue-specific histone methylation dynamicsQ33661504
Relationship between histone H3 lysine 9 methylation, transcription repression, and heterochromatin protein 1 recruitment.Q33707691
Histone deposition protein Asf1 maintains DNA replisome integrity and interacts with replication factor C.Q33841778
PCNA connects DNA replication to epigenetic inheritance in yeast.Q33926058
Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivoQ34266465
Multistep pathway for replication-dependent nucleosome assemblyQ34299321
Mutagen sensitivity and suppression of position-effect variegation result from mutations in mus209, the Drosophila gene encoding PCNA.Q34322170
Split decision: what happens to nucleosomes during DNA replication?Q34387073
A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response.Q34433751
Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitroQ34451628
Structural Modifications of Histones and their Possible Role in the Regulation of RNA SynthesisQ34684282
Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4.Q34709355
Epigenetic inheritance during the cell cycleQ34950028
Histone H3 variants and their potential role in indexing mammalian genomes: the "H3 barcode hypothesis"Q35025031
Chromatin assembly factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating lociQ35188576
Presence of nucleosomes within irregularly cleaved fragments of newly replicated chromatinQ35437001
Essential role of chromatin assembly factor-1-mediated rapid nucleosome assembly for DNA replication and cell division in vertebrate cellsQ35545306
Distribution of the core histones H2A.H2B.H3 and H4 during cell replicationQ35682411
Histone variants, nucleosome assembly and epigenetic inheritanceQ35818464
Two distinct nucleosome assembly pathways: dependent or independent of DNA synthesis promoted by histone H3.1 and H3.3 complexes.Q36238599
Assembly of variant histones into chromatinQ36280301
Duplication and maintenance of heterochromatin domainsQ36313402
Certain and progressive methylation of histone H4 at lysine 20 during the cell cycleQ36421082
The histone methyltransferase SET8 is required for S-phase progressionQ36639133
The yeast Cac1 protein is required for the stable inheritance of transcriptionally repressed chromatin at telomeresQ36717561
Chromatin challenges during DNA replication and repairQ36744476
Mechanisms of epigenetic inheritanceQ36805020
Nonconservative segregation of parental nucleosomes during simian virus 40 chromosome replication in vitroQ36818036
Histone h3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells.Q37164089
Conservative segregation of parental histones during replication in the presence of cycloheximideQ37311846
Direct interaction between SET8 and proliferating cell nuclear antigen couples H4-K20 methylation with DNA replicationQ39262414
P433issue9
P304page(s)820-829
P577publication date2010-09-01
P1433published inProtein & CellQ26854012
P1476titleNucleosome assembly and epigenetic inheritance
P478volume1

Reverse relations

cites work (P2860)
Q35634663A model for mitotic inheritance of histone lysine methylation
Q42922825Epigenetic control and cancer: the potential of histone demethylases as therapeutic targets
Q34034456Epigenetic inheritance mediated by histone lysine methylation: maintaining transcriptional states without the precise restoration of marks?
Q37842140Epigenetic inheritance: uncontested?
Q26823692Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation
Q34765432H3.3-H4 tetramer splitting events feature cell-type specific enhancers
Q49843515New dimensions of asymmetric division in vertebrates
Q24338923Nucleolar protein Spindlin1 recognizes H3K4 methylation and stimulates the expression of rRNA genes
Q34691695Symmetrical modification within a nucleosome is not required globally for histone lysine methylation

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