scholarly article | Q13442814 |
P50 | author | Jing Yun A Zhu | Q86681751 |
P2093 | author name string | Irmtraud M Meyer | |
Adi Steif | |||
Jeff R Proctor | |||
P2860 | cites work | SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework | Q21563523 |
Non-coding RNA | Q22066043 | ||
Database resources of the National Center for Biotechnology Information | Q22680374 | ||
ViennaRNA Package 2.0 | Q24053233 | ||
Mfold web server for nucleic acid folding and hybridization prediction | Q24498105 | ||
Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots | Q24530528 | ||
Rfam: annotating non-coding RNAs in complete genomes | Q24558580 | ||
Sfold web server for statistical folding and rational design of nucleic acids | Q24562042 | ||
CARNAC: folding families of related RNAs | Q24562090 | ||
MUSCLE: multiple sequence alignment with high accuracy and high throughput | Q24613456 | ||
A statistical sampling algorithm for RNA secondary structure prediction | Q24617509 | ||
Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations | Q24618750 | ||
Infernal 1.0: inference of RNA alignments | Q24646921 | ||
The RNA WikiProject: community annotation of RNA families | Q24652435 | ||
Rfam: updates to the RNA families database | Q24655855 | ||
4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing | Q24671878 | ||
Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs | Q24815013 | ||
Crystal structure of the ribosome at 5.5 A resolution | Q27630949 | ||
The Crystal Structure of the Signal Recognition Particle in Complex with Its Receptor | Q27666996 | ||
Identification of novel genes coding for small expressed RNAs | Q27860917 | ||
An mRNA structure that controls gene expression by binding S-adenosylmethionine | Q28156437 | ||
An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes | Q28201771 | ||
Secondary structure prediction for aligned RNA sequences | Q28206303 | ||
The expanding snoRNA world | Q28216313 | ||
RNase P: interface of the RNA and protein worlds | Q28238702 | ||
CONTRAfold: RNA secondary structure prediction without physics-based models | Q28254581 | ||
Attenuation in the control of expression of bacterial operons | Q28276746 | ||
The Eukaryotic Genome as an RNA Machine | Q28315740 | ||
FastTree 2--approximately maximum-likelihood trees for large alignments | Q28748616 | ||
A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme | Q29300331 | ||
Fate of an intervening sequence ribonucleic acid: excision and cyclization of the Tetrahymena ribosomal ribonucleic acid intervening sequence in vivo | Q30463571 | ||
mRNA secondary structures fold sequentially but exchange rapidly in vivo | Q33531744 | ||
TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures | Q33621382 | ||
RNA secondary structure prediction using stochastic context-free grammars and evolutionary history | Q33866236 | ||
A kinetic model of RNA folding | Q51653515 | ||
The computer simulation of RNA folding pathways using a genetic algorithm. | Q52338286 | ||
Coupling of rRNA transcription and ribosomal assembly in vivo. Formation of active ribosomal subunits in Escherichia coli requires transcription of rRNA genes by host RNA polymerase which cannot be replaced by bacteriophage T7 RNA polymerase. | Q53022109 | ||
Perturbed folding kinetics of circularly permuted RNAs with altered topology. | Q53656683 | ||
Transcriptional pausing in vivo: a nascent RNA hairpin restricts lateral movements of RNA polymerase in both forward and reverse directions. | Q54482956 | ||
The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch | Q58001430 | ||
A tyrosyl-tRNA synthetase can function similarly to an RNA structure in the Tetrahymena ribozyme | Q59060311 | ||
Crystal structure of the RNA component of bacterial ribonuclease P | Q59087939 | ||
A kinetic approach to the prediction of RNA secondary structures | Q69102549 | ||
Sequential folding of transfer RNA. A nuclear magnetic resonance study of successively longer tRNA fragments with a common 5' end | Q72149606 | ||
Pathway modulation, circular permutation and rapid RNA folding under kinetic control | Q74453074 | ||
RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA | Q79836922 | ||
Phylogeny, genome evolution, and host specificity of single-stranded RNA bacteriophage (family Leviviridae). | Q33936330 | ||
The riboswitch control of bacterial metabolism | Q33975194 | ||
Translational control of bacterial heat shock and virulence genes by temperature-sensing mRNAs | Q34020569 | ||
The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA. | Q34021136 | ||
A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA. | Q34095550 | ||
Finding the common structure shared by two homologous RNAs. | Q34166747 | ||
Structure of 4.5S RNA in the signal recognition particle of Escherichia coli as studied by enzymatic and chemical probing | Q34361058 | ||
RNA folding at elementary step resolution | Q34362448 | ||
Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice | Q34366030 | ||
Riboswitches as versatile gene control elements | Q34421740 | ||
Structure clustering features on the Sfold Web server | Q34444156 | ||
RNAII transcribed by IPTG-induced T7 RNA polymerase is non-functional as a replication primer for ColE1-type plasmids in Escherichia coli | Q34750526 | ||
RNA folding: models and perspectives | Q35165224 | ||
Secondary structure formation during RNA synthesis | Q35743700 | ||
Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme | Q35780004 | ||
Structural insights into the signal recognition particle | Q35799985 | ||
RNA and protein folding: common themes and variations | Q36081943 | ||
Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures | Q36156699 | ||
Riboswitches and the role of noncoding RNAs in bacterial metabolic control | Q36287046 | ||
RNA folding during transcription | Q36475384 | ||
An operational RNA code for amino acids and possible relationship to genetic code | Q36552141 | ||
RNA dynamics: it is about time. | Q36967162 | ||
Identification of a precursor molecular for the RNA moiety of the processing enzyme RNase P | Q37343026 | ||
A comparative method for finding and folding RNA secondary structures within protein-coding regions | Q37537881 | ||
The mechanism of the second step of pre-mRNA splicing | Q37947529 | ||
COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account | Q40366609 | ||
Tertiary interactions determine the accuracy of RNA folding | Q42025536 | ||
R-CHIE: a web server and R package for visualizing RNA secondary structures | Q42216565 | ||
Translational control by delayed RNA folding: identification of the kinetic trap. | Q42225258 | ||
Formation of metastable RNA structures by sequential folding during transcription: time-resolved structural analysis of potato spindle tuber viroid (-)-stranded RNA by temperature-gradient gel electrophoresis | Q43206426 | ||
Effect of transcription on folding of the Tetrahymena ribozyme | Q43207093 | ||
The neurospora CYT-18 protein suppresses defects in the phage T4 td intron by stabilizing the catalytically active structure of the intron core | Q44908509 | ||
Folding kinetics of large RNAs | Q46535989 | ||
Kinetics and thermodynamics make different contributions to RNA folding in vitro and in yeast | Q46792095 | ||
Cloning and sequence analysis of the Escherichia coli 4.5 S RNA gene | Q48387434 | ||
An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots | Q48565750 | ||
P275 | copyright license | Creative Commons Attribution-NonCommercial 3.0 Unported | Q18810331 |
P6216 | copyright status | copyrighted | Q50423863 |
P433 | issue | 12 | |
P407 | language of work or name | English | Q1860 |
P304 | page(s) | 6273-6285 | |
P577 | publication date | 2013-04-26 | |
P1433 | published in | Nucleic Acids Research | Q135122 |
P1476 | title | Transient RNA structure features are evolutionarily conserved and can be computationally predicted | |
P478 | volume | 41 |
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Q57285695 | Viroid research and its significance for RNA technology and basic biochemistry |
Q30486962 | e-RNA: a collection of web servers for comparative RNA structure prediction and visualisation. |
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