Nuclear proteome response to cell wall removal in rice (Oryza sativa)

scientific article published on 19 June 2013

Nuclear proteome response to cell wall removal in rice (Oryza sativa) is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1038038164
P356DOI10.1186/1477-5956-11-26
P932PMC publication ID3695858
P698PubMed publication ID23777608
P5875ResearchGate publication ID239946623

P2093author name stringJian Zhang
Zhaohua Peng
Feng Tan
Ken Pendarvis
Hana Mujahid
Babi Ramesh Reddy Nallamilli
P2860cites workAgBase: a functional genomics resource for agricultureQ21266584
ProtQuant: a tool for the label-free quantification of MudPIT proteomics dataQ21284217
Gene ontology: tool for the unification of biologyQ23781406
Molecular architecture of SMC proteins and the yeast cohesin complexQ24296209
The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classesQ24555125
High resolution two-dimensional electrophoresis of proteinsQ24608190
Np95 is a histone-binding protein endowed with ubiquitin ligase activityQ24629660
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT MethodQ25938999
Rice proteomics: recent developments and analysis of nuclear proteinsQ31100389
Removal of high-abundance proteins for nuclear subproteome studies in rice (Oryza sativa) endospermQ33315270
Extraction of nuclear proteins from root meristematic cellsQ33343377
Anaerobic induction and tissue-specific expression of maize Adh1 promoter in transgenic rice plants and their progenyQ33343509
Comparative analysis of proteome differential regulation during cell dedifferentiation in ArabidopsisQ33371610
Subunits of yeast RNA polymerases: structure and functionQ33538572
Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functionsQ33564752
Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in ArabidopsisQ33841703
Quality of computationally inferred gene ontology annotationsQ34302143
Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from ArabidopsisQ34625405
AgBase: a unified resource for functional analysis in agricultureQ35545873
Transcriptional coregulator SNW/SKIP: the concealed tie of dissimilar pathwaysQ35723601
Plant nuclear bodiesQ35921729
Genetics of eukaryotic RNA polymerases I, II, and IIIQ37059642
Unique aspects of the grass cell wallQ37146893
Tools for high-spatial and temporal-resolution analysis of environmental responses in plantsQ37760848
The global transcriptional response to transient cell wall damage in Saccharomyces cerevisiae and its regulation by the cell integrity signaling pathwayQ38345649
agriGO: a GO analysis toolkit for the agricultural communityQ38373934
Identification and characterization of nuclear pore complex components in Arabidopsis thaliana.Q42770841
The SRA methyl-cytosine-binding domain links DNA and histone methylationQ42855393
OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa)Q42915049
Rice SUVH histone methyltransferase genes display specific functions in chromatin modification and retrotransposon repressionQ43010484
Application of rice nuclear proteome analysis to the identification of evolutionarily conserved and glucose-responsive nuclear proteins.Q45924019
Transcriptional dynamics during cell wall removal and regeneration reveals key genes involved in cell wall development in riceQ46343734
Solubilization of plant membrane proteins for analysis by two-dimensional gel electrophoresisQ46735688
Proteomic analysis using an unfinished bacterial genome: the effects of subminimum inhibitory concentrations of antibiotics on Mannheimia haemolytica virulence factor expressionQ46772991
RNA polymerase II gene (RPB2) encoding the second largest protein subunit in Phaeosphaeria nodorum and P. avenaria.Q48084318
Arabidopsis chromatin-associated HMGA and HMGB use different nuclear targeting signals and display highly dynamic localization within the nucleus.Q50707626
Molecular characterization of the tobacco SET domain protein NtSET1 unravels its role in histone methylation, chromatin binding, and segregation.Q50786365
Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.Q51797311
On the occurrence of a fibrous lamina on the inner aspect of the nuclear envelope in certain cells of vertebratesQ72174463
Identification of specific plant nucleolar phosphoproteins in a functional proteomic analysisQ75405428
A proteomic study of the arabidopsis nuclear matrixQ79078233
Protocols for nuclei isolation and nuclear protein extraction from the resurrection plant Xerophyta viscosa for proteomic studiesQ79665166
Proteome and phosphoproteome analysis of chromatin associated proteins in rice (Oryza sativa)Q79903353
Proteome and phosphoproteome differential expression under salinity stress in rice (Oryza sativa) rootsQ80039927
Intron-regulated expression of SUVH3, an Arabidopsis Su(var)3-9 homologueQ80159074
Extraction, purification and analysis of histonesQ80422717
A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clockQ80580019
The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genomeQ81013169
Differential histone modification and protein expression associated with cell wall removal and regeneration in rice (Oryza sativa)Q85218158
Plant regeneration from protoplast-derived callus of rice (Oryza sativa L.).Q86779397
P433issue1
P921main subjectOryza sativaQ161426
cell wallQ128700
P304page(s)26
P577publication date2013-06-19
P1433published inProteome ScienceQ15754354
P1476titleNuclear proteome response to cell wall removal in rice (Oryza sativa)
P478volume11

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cites work (P2860)
Q35547828A hemicellulose-bound form of silicon with potential to improve the mechanical properties and regeneration of the cell wall of rice
Q99551229Analysis of rice nuclear-localized seed-expressed proteins and their database (RSNP-DB)
Q40871910Comparative Proteomic Analysis of Cotton Fiber Development and Protein Extraction Method Comparison in Late Stage Fibers
Q28540007Global analysis of lysine acetylation suggests the involvement of protein acetylation in diverse biological processes in rice (Oryza sativa)
Q30371923Inside a plant nucleus: discovering the proteins.
Q50089442Low-Boron Tolerance Strategies Involving Pectin-Mediated Cell Wall Mechanical Properties in Brassica napus
Q42456512Maize (Zea mays L.) seedling leaf nuclear proteome and differentially expressed proteins between a hybrid and its parental lines
Q47096261Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds.
Q37618932UNcleProt (Universal Nuclear Protein database of barley): The first nuclear protein database that distinguishes proteins from different phases of the cell cycle

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