Conceptual bases for quantifying the role of the environment on gene evolution: the participation of positive selection and neutral evolution

scientific article published on November 2007

Conceptual bases for quantifying the role of the environment on gene evolution: the participation of positive selection and neutral evolution is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.1111/J.1469-185X.2007.00024.X
P698PubMed publication ID17944617

P50authorMichel C MilinkovitchQ59312329
Ludovic OrlandoQ28741734
Anthony LevasseurQ30004376
P2093author name stringPierre Pontarotti
Etienne G J Danchin
Xavier Bailly
P2860cites workThe Strength of Phenotypic Selection in Natural PopulationsQ57762482
Natural Selection and Parallel Speciation in Sympatric SticklebacksQ58416003
Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primatesQ21090246
Gene losses during human originsQ21092779
Population history and natural selection shape patterns of genetic variation in 132 genesQ21146407
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiationQ21994463
Evaluating plague and smallpox as historical selective pressures for the CCR5-Delta 32 HIV-resistance alleleQ22066229
The origin of new genes: glimpses from the young and oldQ22122023
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculiQ22122366
Detecting recent positive selection in the human genome from haplotype structureQ22122511
Molecular evolution of FOXP2, a gene involved in speech and languageQ22122513
Detection of the signature of natural selection in humans: evidence from the Duffy blood group locusQ24540233
Adaptive evolution of color vision of the Comoran coelacanth (Latimeria chalumnae)Q24654607
Convergent adaptation of human lactase persistence in Africa and EuropeQ24655819
Replicated evolution of trophic specializations in an endemic cichlid fish lineage from Lake TanganyikaQ24679778
Molecular evidence that echiurans and pogonophorans are derived annelidsQ24683704
Convergent evolution of antifreeze glycoproteins in Antarctic notothenioid fish and Arctic codQ24685488
Statistical methods for detecting molecular adaptationQ28140163
Recognition of Appropriate Backgrounds by the Pale and Black Phases of LepidopteraQ28202821
Evolution of the gene network underlying wing polyphenism in antsQ28214449
Identification of a variant associated with adult-type hypolactasiaQ28215372
The rise and fall of the Carbonaria form of the peppered mothQ28240068
Evolutionary diversification of TTX-resistant sodium channels in a predator-prey interactionQ28243909
Evolutionary study of multigenic families mapping close to the human MHC class I regionQ28249974
Differential modulation of endotoxin responsiveness by human caspase-12 polymorphismsQ28260472
Reconstructing the evolutionary history of the artiodactyl ribonuclease superfamilyQ28287483
Rate of molecular evolution of the seminal protein gene SEMG2 correlates with levels of female promiscuityQ28292172
Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistanceQ29614684
Community genomics among stratified microbial assemblages in the ocean's interiorQ29614711
Molecular signatures of natural selectionQ29614731
Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin allelesQ29615004
Contingency and determinism in replicated adaptive radiations of island lizardsQ29615005
Inferring nonneutral evolution from human-chimp-mouse orthologous gene triosQ29616015
Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selectionQ29616615
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineagesQ29618516
Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domainQ29618741
The structural basis of molecular adaptationQ30430193
Characterization of RS29, a blue-green proteorhodopsin variant from the Red Sea.Q30927676
Generation of evolutionary novelty by functional shiftQ33665075
Convergent evolution of the red- and green-like visual pigment genes in fish, Astyanax fasciatus, and humanQ33793411
The evolution of human anti-double-stranded DNA autoantibodiesQ33878890
Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.Q33921320
Humans as the world's greatest evolutionary forceQ33954568
Gene co-option in physiological and morphological evolutionQ33960431
Prevalence of SHV-12 among clinical isolates of Klebsiella pneumoniae producing extended-spectrum beta-lactamases and identification of a novel AmpC enzyme (CMY-8) in Southern TaiwanQ33979601
The generation and diversification of butterfly eyespot color patternsQ34099203
Abundant raw material for cis-regulatory evolution in humansQ34157325
The evolutionary response of predators to dangerous prey: hotspots and coldspots in the geographic mosaic of coevolution between garter snakes and newts.Q34160681
The causal element for the lactase persistence/non-persistence polymorphism is located in a 1 Mb region of linkage disequilibrium in Europeans.Q34221675
Lens crystallins: gene recruitment and evolutionary dynamismQ34344383
Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter fluxQ34349665
The evolutionary history of the CCR5-Delta32 HIV-resistance mutationQ34395117
Adaptive evolution of multicolored fluorescent proteins in reef-building coralsQ34493988
Enzyme/crystallins: gene sharing as an evolutionary strategyQ34499074
A single amino acid mutation contributes to adaptive beach mouse color patternQ34545438
Accelerated evolution of conserved noncoding sequences in humansQ34578926
Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humansQ34645182
Applications of selective neutrality tests to molecular ecologyQ34764728
The loss of the hemoglobin H2S-binding function in annelids from sulfide-free habitats reveals molecular adaptation driven by Darwinian positive selection.Q35022334
Molecular analysis of the evolutionary significance of ultraviolet vision in vertebratesQ35167967
Tracing the evolution of gene loss in obligate bacterial symbiontsQ35565617
The genetics and genomics of insecticide resistanceQ35704439
Convergent adaptive radiations in Madagascan and Asian ranid frogs reveal covariation between larval and adult traitsQ35787358
The major histocompatibility complex originQ35806883
Positive selection on the human genome.Q35883312
Evidence for the multicentric origin of the sickle cell hemoglobin gene in AfricaQ36255660
Adaptive radiation in microbial microcosmsQ36325031
Parallel evolution of antibody variable regions by somatic processes: consecutive shared somatic alterations in VH genes expressed by independently generated hybridomas apparently acquired by point mutation and selection rather than by gene conversiQ36352059
Evolution of antibody structure during the immune response. The differentiative potential of a single B lymphocyteQ36356890
Origins and antiquity of X-linked triallelic color vision systems in New World monkeysQ36797566
Molecular heterochrony in the early development of DrosophilaQ37147286
Molecular analysis of the beta-globin gene cluster in the Niokholo Mandenka population reveals a recent origin of the beta(S) Senegal mutationQ37360157
Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeastsQ37557467
Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment.Q37570840
Convergent evolution of behavior in an adaptive radiation of Hawaiian web-building spidersQ37621885
Lens crystallins of invertebrates--diversity and recruitment from detoxification enzymes and novel proteinsQ38563632
Prevalence of beta-lactamases among 1,072 clinical strains of Proteus mirabilis: a 2-year survey in a French hospitalQ39474457
Evolution and dissemination of beta-lactamases accelerated by generations of beta-lactam antibioticsQ41311524
Convergent evolution of major histocompatibility complex molecules in humans and New World monkeysQ42623420
Evolution of MHC polymorphism: extensive sharing of polymorphic sequence motifs between human and bovine DRB allelesQ42627354
RETRACTED: Darwinian selection on a selfing locusQ42642881
Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplicationQ42715521
Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classesQ43830196
The effects of artificial selection on the maize genomeQ46515058
Amino acid sequences of stomach and nonstomach lysozymes of ruminantsQ47343536
Evolution of coral pigments recreated.Q47846068
Complex distribution of avian color vision systems revealed by sequencing the SWS1 opsin from total DNA.Q47950080
Evolutionary analysis of TATA-less proximal promoter functionQ47986152
Episodic adaptive evolution of primate lysozymesQ48055066
Evolution of stomach lysozyme: the pig lysozyme geneQ48065223
Parallel adaptive origins of digestive RNases in Asian and African leaf monkeysQ48086797
The Molecular Basis of Visual ExcitationQ48427383
Evolution of gene expression in the Drosophila melanogaster subgroup.Q52023786
Dieldrin resistance in Lucilia cuprina (the australian sheep blowfly): chance, selection and response.Q52579804
Detection of convergent and parallel evolution at the amino acid sequence levelQ56113490
Evolution of Resistance in Culex pipiens: Allele Replacement and Changing EnvironmentQ56834343
Positive Selection on a Human-Specific Transcription Factor Binding Site Regulating IL4 ExpressionQ57309676
P433issue4
P1104number of pages22
P304page(s)551-572
P577publication date2007-11-01
P1433published inBiological ReviewsQ2500948
P1476titleConceptual bases for quantifying the role of the environment on gene evolution: the participation of positive selection and neutral evolution
P478volume82

Reverse relations

cites work (P2860)
Q40310626Adaptive Evolution Hotspots at the GC-Extremes of the Human Genome: Evidence for Two Functionally Distinct Pathways of Positive Selection
Q33498939Caspase-12 and the inflammatory response to Yersinia pestis
Q28596354Comparison of a Modern and Fossil Pithovirus Reveals Its Genetic Conservation and Evolution
Q30528935Complex patterns of divergence among green-sensitive (RH2a) African cichlid opsins revealed by Clade model analyses
Q116988628Detecting Manganese Peroxidase (MnP) Gene in Ganoderma Species
Q21202053Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
Q33671490Exploring laccase-like multicopper oxidase genes from the ascomycete Trichoderma reesei: a functional, phylogenetic and evolutionary study
Q21093414GPR50 is the mammalian ortholog of Mel1c: evidence of rapid evolution in mammals
Q34120942Large-scale analysis of orthologs and paralogs under covarion-like and constant-but-different models of amino acid evolution
Q33504914PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees
Q87441055Positive selection drives rapid evolution of certain amino acid residues in an evolutionarily highly conserved interferon-inducible antiviral protein of fishes
Q36766892Programmed genetic instability: a tumor-permissive mechanism for maintaining the evolvability of higher species through methylation-dependent mutation of DNA repair genes in the male germ line
Q37037777Strategies for reliable exploitation of evolutionary concepts in high throughput biology.
Q33911912The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown
Q28742097The role of duplications in the evolution of genomes highlights the need for evolutionary-based approaches in comparative genomics
Q82249269Was the ancestral MHC involved in innate immunity?

Search more.