| review article | Q7318358 |
| scholarly article | Q13442814 |
| P356 | DOI | 10.1016/J.SBI.2007.10.005 |
| P8608 | Fatcat ID | release_r63fhvakvbdl5nypqwzemb6oe4 |
| P698 | PubMed publication ID | 18160277 |
| P5875 | ResearchGate publication ID | 5689715 |
| P50 | author | Cecilia Clementi | Q47328383 |
| P433 | issue | 1 | |
| P921 | main subject | protein folding | Q847556 |
| P304 | page(s) | 10-15 | |
| P577 | publication date | 2007-12-21 | |
| P1433 | published in | Current Opinion in Structural Biology | Q15758416 |
| P1476 | title | Coarse-grained models of protein folding: toy models or predictive tools? | |
| P478 | volume | 18 |
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| Q38859660 | Flexible fitting to cryo-EM density map using ensemble molecular dynamics simulations. |
| Q34635987 | Frustration in biomolecules |
| Q36426407 | Further optimization of a hybrid united-atom and coarse-grained force field for folding simulations: Improved backbone hydration and interactions between charged side chains |
| Q33481132 | General library-based Monte Carlo technique enables equilibrium sampling of semi-atomistic protein models |
| Q51342587 | Guiding probabilistic search of the protein conformational space with structural profiles. |
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| Q57129265 | Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites |
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| Q30387121 | Implementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems; towards millisecond-scale simulations of protein structure, dynamics, and thermodynamics. |
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| Q33945656 | In search of the protein native state with a probabilistic sampling approach |
| Q47371880 | Integrated prediction of protein folding and unfolding rates from only size and structural class |
| Q49333907 | Investigation of Structural Dynamics of Enzymes and Protonation States of Substrates Using Computational Tools. |
| Q51083981 | Iterative derivation of effective potentials to sample the conformational space of proteins at atomistic scale. |
| Q30367734 | Learning To Fold Proteins Using Energy Landscape Theory. |
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| Q41841806 | Modulation of a protein free-energy landscape by circular permutation |
| Q30152917 | Molecular dynamics study on folding and allostery in RfaH. |
| Q38129103 | Molecular mechanics |
| Q47135560 | Molecular simulations of cellular processes. |
| Q34535884 | Molecular simulations of mutually exclusive folding in a two-domain protein switch |
| Q37746989 | Molecular simulations of protein disorder |
| Q35377697 | Multiscale approach to the determination of the photoactive yellow protein signaling state ensemble |
| Q38272896 | Multiscale characterization of protein conformational ensembles |
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| Q37250018 | Multiscale methods for macromolecular simulations. |
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| Q37341806 | Perspective: Quantum mechanical methods in biochemistry and biophysics |
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| Q34425273 | Primary peptide folding dynamics observed with ultrafast temperature jump |
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| Q48047200 | Protein simulation using coarse-grained two-bead multipole force field with polarizable water models |
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| Q30010022 | Robustness of atomistic Gō models in predicting native-like folding intermediates |
| Q35952382 | SMOG 2: A Versatile Software Package for Generating Structure-Based Models |
| Q89919279 | Self-organized emergence of folded protein-like network structures from geometric constraints |
| Q57455853 | Simulations Reveal Multiple Intermediates in the Unzipping Mechanism of Neuronal SNARE Complex |
| Q47580994 | Single-pass incremental force updates for adaptively restrained molecular dynamics. |
| Q46263909 | Sketching protein aggregation with a physics-based toy model |
| Q41239653 | Stability and folding behavior analysis of zinc-finger using simple models |
| Q36039378 | Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations |
| Q46339388 | Structural dynamics of free proteins in diffraction |
| Q46104170 | Structural ultrafast dynamics of macromolecules: diffraction of free DNA and effect of hydration |
| Q24617692 | Taming the complexity of protein folding |
| Q48044175 | The attachment of α-synuclein to a fiber: A coarse-grain approach. |
| Q36786994 | The capillarity picture and the kinetics of one-dimensional protein folding |
| Q41902515 | The spectrum of biomolecular states and motions |
| Q49961888 | Theory of wavelet-based coarse-graining hierarchies for molecular dynamics. |
| Q51470890 | Thermodynamics and kinetics of large-time-step molecular dynamics. |
| Q56157182 | Time Integrators for Molecular Dynamics |
| Q53079816 | Topology-based modeling of intrinsically disordered proteins: balancing intrinsic folding and intermolecular interactions. |
| Q58042906 | Torsional Network Model: Normal Modes in Torsion Angle Space Better Correlate with Conformation Changes in Proteins |
| Q34019396 | Towards temperature-dependent coarse-grained potentials of side-chain interactions for protein folding simulations. I: molecular dynamics study of a pair of methane molecules in water at various temperatures. |
| Q48046239 | Two-bead polarizable water models combined with a two-bead multipole force field (TMFF) for coarse-grained simulation of proteins |
| Q36901545 | Unfolding and melting of DNA (RNA) hairpins: the concept of structure-specific 2D dynamic landscapes |
| Q33529576 | Universal distribution of protein evolution rates as a consequence of protein folding physics |
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