Genome-wide searching with base-pairing kernel functions for noncoding RNAs: computational and expression analysis of snoRNA families in Caenorhabditis elegans.

scientific article published on 07 January 2009

Genome-wide searching with base-pairing kernel functions for noncoding RNAs: computational and expression analysis of snoRNA families in Caenorhabditis elegans. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/NAR/GKN1054
P932PMC publication ID2647286
P698PubMed publication ID19129214
P5875ResearchGate publication ID23764037

P50authorKengo SatoQ42859738
Kohji HottaQ55860245
Yutaka SaitoQ57078016
Kotaro OkaQ77544727
P2093author name stringYasubumi Sakakibara
Kensuke Morita
P2860cites workIdentification and classification of conserved RNA secondary structures in the human genomeQ21145687
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure predictionQ21284284
Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expressionQ24539974
Noncoding RNA gene detection using comparative sequence analysisQ24555068
Fast and reliable prediction of noncoding RNAsQ24556645
Rfam: annotating non-coding RNAs in complete genomesQ24558580
Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genomeQ24563506
RNA sequence analysis using covariance modelsQ24609173
RSEARCH: finding homologs of single structured RNA sequencesQ24648763
The microRNAs of Caenorhabditis elegansQ24672515
snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genomeQ24672901
Structured RNAs in the ENCODE selected regions of the human genomeQ24673501
Primer3 on the WWW for general users and for biologist programmersQ27861030
Vienna RNA secondary structure serverQ28131816
A computational screen for methylation guide snoRNAs in yeastQ28137615
Stochastic pairwise alignmentsQ28208265
The equilibrium partition function and base pair binding probabilities for RNA secondary structureQ28261689
Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics dataQ31050070
RNA secondary structure prediction using stochastic context-free grammars and evolutionary historyQ33866236
The hidden genetic program of complex organismsQ34359337
STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic timeQ34513713
SnoReport: computational identification of snoRNAs with unknown targetsQ34693161
WormBase 2007Q34711954
Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarrayQ36004668
miRRim: a novel system to find conserved miRNAs with high sensitivity and specificityQ36148359
Centroid estimation in discrete high-dimensional spaces with applications in biologyQ36491129
Stochastic context-free grammars for tRNA modelingQ37587522
Protein homology detection using string alignment kernelsQ48028746
Stem kernels for RNA sequence analysesQ48077060
A search for H/ACA snoRNAs in yeast using MFE secondary structure predictionQ48248750
De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measuresQ48415584
A reliable sequence alignment method based on probabilities of residue correspondences.Q52327452
RNA multi-structure landscapes. A study based on temperature dependent partition functions.Q52407559
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genomeQ56272005
Prediction of structured non-coding RNAs in the genomes of the nematodesCaenorhabditis elegans andCaenorhabditis briggsaeQ56991311
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectCaenorhabditis elegansQ91703
P304page(s)999-1009
P577publication date2009-01-07
P1433published inNucleic Acids ResearchQ135122
P1476titleGenome-wide searching with base-pairing kernel functions for noncoding RNAs: computational and expression analysis of snoRNA families in Caenorhabditis elegans
P478volume37

Reverse relations

cites work (P2860)
Q33827047Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures
Q35630360Genome-wide analysis of small nucleolar RNAs of Leishmania major reveals a rich repertoire of RNAs involved in modification and processing of rRNA.
Q33755589Robust and accurate prediction of noncoding RNAs from aligned sequences
Q36053767SHARAKU: an algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing
Q35024039snOPY: a small nucleolar RNA orthological gene database

Search more.