Computational insights into the O2-evolving complex of photosystem II.

scientific article published on 16 May 2008

Computational insights into the O2-evolving complex of photosystem II. is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1007/S11120-008-9307-0
P932PMC publication ID2728911
P698PubMed publication ID18483777
P5875ResearchGate publication ID215891222

P50authorJosé A GascónQ51150623
Gary W BrudvigQ88316505
P2093author name stringVictor S Batista
Eduardo M Sproviero
James P McEvoy
P2860cites workCrystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolutionQ24541286
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolutionQ27629975
Architecture of the photosynthetic oxygen-evolving centerQ27643091
X-ray spectroscopy-based structure of the Mn cluster and mechanism of photosynthetic oxygen evolutionQ28140271
Powering the planet: chemical challenges in solar energy utilizationQ28317749
Probing the Mn oxidation states in the OEC. Insights from spectroscopic, computational and kinetic dataQ30620829
Amino acid residues involved in the coordination and assembly of the manganese cluster of photosystem II. Proton-coupled electron transport of the redox-active tyrosines and its relationship to water oxidationQ30620830
A hydrogen-atom abstraction model for the function of YZ in photosynthetic oxygen evolution.Q30707176
Distinct water-exchange mechanisms for trinuclear transition-metal clustersQ31060028
Amino acid residues that modulate the properties of tyrosine Y(Z) and the manganese cluster in the water oxidizing complex of photosystem II.Q31689086
Rapid loss of structural motifs in the manganese complex of oxygenic photosynthesis by X-ray irradiation at 10-300 K.Q51304908
Performance of molecular orbital methods and density functional theory in the computation of geometries and energies of metal aqua ions.Q51629804
Energetics of a possible proton exit pathway for water oxidation in photosystem II.Q51951003
Structural and oxidation state changes of the photosystem II manganese complex in four transitions of the water oxidation cycle (S0 --> S1, S1 --> S2, S2 --> S3, and S3,4 --> S0) characterized by X-ray absorption spectroscopy at 20 K and room temperQ52940336
Stoichiometry of proton release from the catalytic center in photosynthetic water oxidation. Reexamination by a glass electrode study at ph 5.5-7.2.Q52976479
The function of D1-H332 in Photosystem II electron transport studied by thermoluminescence and chlorophyll fluorescence in site-directed mutants of Synechocystis 6803.Q53614251
Photosynthetic O2 formation tracked by time-resolved x-ray experimentsQ33227059
X-ray damage to the Mn4Ca complex in single crystals of photosystem II: a case study for metalloprotein crystallographyQ33917512
Towards complete cofactor arrangement in the 3.0 A resolution structure of photosystem II.Q33992219
Pulsed and parallel-polarization EPR characterization of the photosystem II oxygen-evolving complexQ34001380
Cooperation of charges in photosynthetic O2 evolution-I. A linear four step mechanismQ34053836
Structural Change of the Mn Cluster during the S2→S3 State Transition of the Oxygen-Evolving Complex of Photosystem II. Does It Reflect the Onset of Water/Substrate Oxidation? Determination by Mn X-ray Absorption Spectroscopy.Q34068522
The tetra-manganese complex of photosystem II during its redox cycle - X-ray absorption results and mechanistic implications.Q34104145
EPR/ENDOR characterization of the physical and electronic structure of the OEC Mn clusterQ34104164
EPR studies of the water oxidizing complex in the S1 and the higher S states: the manganese cluster and Y(Z) radicalQ34104169
Photosynthetic water oxidation: towards a mechanismQ34104173
Oxygen ligand exchange at metal sites - implications for the O2 evolving mechanism of photosystem II.Q34104185
Photosynthetic water oxidation to molecular oxygen: apparatus and mechanismQ34104189
Mechanism of photosynthetic water oxidation: combining biophysical studies of photosystem II with inorganic model chemistryQ34104195
Kinetics and pathways of charge recombination in photosystem II.Q34135019
The S0 State of the Oxygen-Evolving Complex in Photosystem II Is Paramagnetic: Detection of an EPR Multiline SignalQ34165610
High-valent transition metal centers and noninnocent ligands in metalloporphyrins and related molecules: a broad overview based on quantum chemical calculationsQ34420398
Detection of one slowly exchanging substrate water molecule in the S3 state of photosystem IIQ34423079
EPR signals from modified charge accumulation states of the oxygen evolving enzyme in Ca2+-deficient photosystem II.Q34457641
Quantum chemical studies of manganese centers in biologyQ34662123
Where plants make oxygen: a structural model for the photosynthetic oxygen-evolving manganese clusterQ34731113
Proton exit from the heme-copper oxidase of Escherichia coli.Q34788633
Structure, dynamics, and energetics of the primary photochemistry of photosystem II of oxygenic photosynthesisQ34833916
Two-state reactivity mechanisms of hydroxylation and epoxidation by cytochrome P-450 revealed by theory.Q34987326
Identification of histidine at the catalytic site of the photosynthetic oxygen-evolving complexQ34994559
High-level ab initio calculations on the energetics of low-lying spin states of biologically relevant transition metal complexes: a first progress report.Q35053350
Photosystem II: the engine of lifeQ35087344
Structure of the manganese complex in photosystem II: insights from X-ray spectroscopyQ35213350
The manganese and calcium ions of photosynthetic oxygen evolutionQ35360136
Mechanism for photosynthetic O2 evolutionQ35613271
The water-oxidation complex in photosynthesisQ35752106
Recent pulsed EPR studies of the photosystem II oxygen-evolving complex: implications as to water oxidation mechanismsQ35752111
Time-resolved oxygen production by PSII: chasing chemical intermediatesQ35752121
X-ray spectroscopy of the Mn4Ca cluster in the water-oxidation complex of Photosystem II.Q36174112
Directed alteration of the D1 polypeptide of photosystem II: evidence that tyrosine-161 is the redox component, Z, connecting the oxygen-evolving complex to the primary electron donor, P680.Q54346643
Aspartate 170 of the photosystem II reaction center polypeptide D1 is involved in the assembly of the oxygen-evolving manganese clusterQ56904335
Dinuclear Diazene Iron and Ruthenium Complexes as Models for Studying Nitrogenase ActivityQ57905543
Reparameterization of hybrid functionals based on energy differences of states of different multiplicityQ57905544
Iron(IV) Porphyrin Difluoride Does Not Exist: Implications for DFT Calculations on Heme Protein Reaction PathwaysQ58205679
Spin forbidden chemical reactions of transition metal compounds. New ideas and new computational challengesQ60210724
The Mechanism for Water Exchange in [UO2(H2O)5]2+and [UO2(oxalate)2(H2O)]2-, as Studied by Quantum Chemical MethodsQ61057037
Role of the carboxy terminus of polypeptide D1 in the assembly of a functional water-oxidizing manganese cluster in photosystem II of the cyanobacterium Synechocystis sp. PCC 6803: assembly requires a free carboxyl group at C-terminal position 344Q67571027
Investigation of the differences in the local protein environments surrounding tyrosine radicals YZ. and YD. in photosystem II using wild-type and the D2-Tyr160Phe mutant of Synechocystis 6803Q71087358
Reversible binding of nitric oxide to tyrosyl radicals in photosystem II. Nitric oxide quenches formation of the S3 EPR signal species in acetate-inhibited photosystem IIQ71832610
Lumenal side histidine mutations in the D1 protein of Photosystem II affect donor side electron transfer in Chlamydomonas reinhardtiiQ72413402
Ab initio multiconfiguration reference perturbation theory calculations on the energetics of low-energy spin states of iron(III) porphyrinsQ73248776
The photosynthetic oxygen evolving complex requires chloride for its redox state S2-->S3 and S3-->S0 transitions but not for S0-->S1 or S1-->S2 transitionsQ73299168
(18)O isotope exchange measurements reveal that calcium is involved in the binding of one substrate-water molecule to the oxygen-evolving complex in photosystem IIQ73412163
EPR investigation of water oxidizing photosystem II: detection of new EPR signals at cryogenic temperaturesQ73427939
EXAFS comparison of the dimanganese core structures of manganese catalase, arginase, and manganese-substituted ribonucleotide reductase and hemerythrinQ73561292
Two-state reactivity as a new concept in organometallic chemistryQ73570860
The affinities for the two substrate water binding sites in the O(2) evolving complex of photosystem II vary independently during S-state turnoverQ73660212
A metalloradical mechanism for the generation of oxygen from water in photosynthesisQ73709450
Quantifying the ion selectivity of the Ca2+ site in photosystem II: evidence for direct involvement of Ca2+ in O2 formationQ74095128
High-spin states (S >/= 5/2) of the photosystem II manganese complexQ74494773
Orbital Configuration of the Valence Electrons, Ligand Field Symmetry, and Manganese Oxidation States of the Photosynthetic Water Oxidizing Complex: Analysis of the S(2) State Multiline EPR SignalsQ74821072
Theoretical Modeling of Water Exchange on [Pd(H(2)O)(4)](2+), [Pt(H(2)O)(4)](2+), and trans-[PtCl(2)(H(2)O)(2)]Q74821724
Dual-mode EPR study of new signals from the S3-state of oxygen-evolving complex in photosystem IIQ77293504
Kinetic determination of the fast exchanging substrate water molecule in the S3 state of photosystem IIQ77628687
X-ray absorption spectroscopy on layered photosystem II membrane particles suggests manganese-centered oxidation of the oxygen-evolving complex for the S0-S1, S1-S2, and S2-S3 transitions of the water oxidation cycleQ77710283
Competitive binding of acetate and chloride in photosystem IIQ77817895
Hydrogen bonding, solvent exchange, and coupled proton and electron transfer in the oxidation and reduction of redox-active tyrosine Y(Z) in Mn-depleted core complexes of photosystem IIQ77917330
EPR kinetic studies of oxygen release in thylakoids and PSII membranes: a kinetic intermediate in the S3 to S0 transitionQ77945177
Distinct mechanisms of bridging-oxo exchange in di-mu-O dimanganese complexes with and without water-binding sites: implications for water binding in the O(2)-evolving complex of photosystem IIQ79762621
The performance of hybrid DFT for mechanisms involving transition metal complexes in enzymesQ79866415
DFT and metal-metal bonding: a dys-functional treatment for multiply charged complexes?Q79904114
Determination of mu-oxo exchange rates in di-mu-oxo dimanganese complexes by electrospray ionization mass spectrometryQ79926683
Pulse EPR, 55Mn-ENDOR and ELDOR-detected NMR of the S2-state of the oxygen evolving complex in photosystem IIQ80949059
Bidirectional electron transfer in photosystem I: direct evidence from high-frequency time-resolved EPR spectroscopyQ81102877
55Mn pulse ENDOR at 34 GHz of the S0 and S2 states of the oxygen-evolving complex in photosystem IIQ81427945
Agreement between experiment and hybrid DFT calculations for O--H bond dissociation enthalpies in manganese complexesQ81491668
The mechanism for dioxygen formation in PSII studied by quantum chemical methodsQ81528585
Quantifying the effects of the self-interaction error in DFT: when do the delocalized states appear?Q81883257
Electron spin-lattice relaxation of the S0 state of the oxygen-evolving complex in photosystem II and of dinuclear manganese model complexesQ81895326
Hydroxide instead of bicarbonate in the structure of the oxygen evolving complexQ83055706
A Self-Consistent Space-Domain Decomposition Method for QM/MM Computations of Protein Electrostatic PotentialsQ86839412
QM/MM Models of the O2-Evolving Complex of Photosystem IIQ86849481
Proton release during the redox cycle of the water oxidaseQ86912660
Evidence for impaired hydrogen-bonding of tyrosine YZ in calcium-depleted photosystem IIQ95297478
Water-splitting chemistry of photosystem II.Q36647993
Quantum mechanics/molecular mechanics structural models of the oxygen-evolving complex of photosystem II.Q36774845
No evidence from FTIR difference spectroscopy that glutamate-189 of the D1 polypeptide ligates a Mn ion that undergoes oxidation during the S0 to S1, S1 to S2, or S2 to S3 transitions in photosystem IIQ36835715
No evidence from FTIR difference spectroscopy that aspartate-342 of the D1 polypeptide ligates a Mn ion that undergoes oxidation during the S0 to S1, S1 to S2, or S2 to S3 transitions in photosystem IIQ36839014
QM/MM computational studies of substrate water binding to the oxygen-evolving centre of photosystem II.Q36986247
A guide to electron paramagnetic resonance spectroscopy of Photosystem II membranesQ37155304
Site-directed mutagenesis identifies a tyrosine radical involved in the photosynthetic oxygen-evolving systemQ37482544
The Mn cluster in the S(0) state of the oxygen-evolving complex of photosystem II studied by EXAFS spectroscopy: are there three Di-mu-oxo-bridged Mn(2) moieties in the tetranuclear Mn complex?Q37649968
Oxidation states of the manganese cluster during the flash-induced S-state cycle of the photosynthetic oxygen-evolving complex.Q37651216
Heteronuclear Mn-Ca/Sr complexes, and Ca/Sr EXAFS spectral comparisons with the oxygen-evolving complex of photosystem II.Q37655731
Where water is oxidized to dioxygen: structure of the photosynthetic Mn4Ca clusterQ37659399
High-resolution Mn EXAFS of the oxygen-evolving complex in photosystem II: structural implications for the Mn4Ca clusterQ37694660
Evidence from directed mutagenesis that aspartate 170 of the D1 polypeptide influences the assembly and/or stability of the manganese cluster in the photosynthetic water-splitting complexQ38327318
Site-directed mutagenesis of basic arginine residues 305 and 342 in the CP 43 protein of photosystem II affects oxygen-evolving activity in Synechocystis 6803.Q38328688
Water oxidation in photosystem II: from radical chemistry to multielectron chemistryQ38755138
Don't forget long-term fundamental research in energyQ40243721
Electrostatics and proton transfer in photosynthetic water oxidationQ40873116
Detection of an EPR multiline signal for the S0* state in photosystem II.Q40880901
Directed mutagenesis indicates that the donor to P+680 in photosystem II is tyrosine-161 of the D1 polypeptideQ41392738
Role of D1-His190 in the proton-coupled oxidation of tyrosine YZ in manganese-depleted photosystem II.Q41693773
Histidine 332 of the D1 polypeptide modulates the magnetic and redox properties of the manganese cluster and tyrosine Y(Z) in photosystem II.Q41713547
The two substrate-water molecules are already bound to the oxygen-evolving complex in the S2 state of photosystem II.Q42686786
Does histidine 332 of the D1 polypeptide ligate the manganese cluster in photosystem II? An electron spin echo envelope modulation studyQ43571414
D1-Asp170 is structurally coupled to the oxygen evolving complex in photosystem II as revealed by light-induced Fourier transform infrared difference spectroscopyQ43592666
Tyrosine D oxidation at cryogenic temperature in photosystem II.Q44186738
Histidine at the catalytic site of the photosynthetic oxygen-evolving complexQ44530412
Does aspartate 170 of the D1 polypeptide ligate the manganese cluster in photosystem II? An EPR and ESEEM StudyQ44577329
Evidence that the C-terminus of the D1 polypeptide of photosystem II is ligated to the manganese ion that undergoes oxidation during the S1 to S2 transition: an isotope-edited FTIR studyQ44800767
Role of the conserved arginine pair in proton and electron transfer in cytochrome C oxidaseQ44889239
Structural changes of D1 C-terminal alpha-carboxylate during S-state cycling in photosynthetic oxygen evolutionQ45149905
No evidence from FTIR difference spectroscopy that aspartate-170 of the D1 polypeptide ligates a manganese ion that undergoes oxidation during the S0 to S1, S1 to S2, or S2 to S3 transitions in photosystem II.Q45245696
Amino acid residues that influence the binding of manganese or calcium to photosystem II. 2. The carboxy-terminal domain of the D1 polypeptide.Q45952265
Comparison of the structure of the manganese complex in the S1 and S2 states of the photosynthetic O2-evolving complex: an x-ray absorption spectroscopy study.Q45960724
Role of D1-His190 in proton-coupled electron transfer reactions in photosystem II: a chemical complementation studyQ46118769
Site-directed photosystem II mutants with perturbed oxygen-evolving properties. 2. Increased binding or photooxidation of manganese in the absence of the extrinsic 33-kDa polypeptide in vivoQ46133669
Energetics of primary and secondary electron transfer in Photosystem II membrane particles of spinach revisited on basis of recombination-fluorescence measurementsQ46476450
Changes in structural and functional properties of oxygen-evolving complex induced by replacement of D1-glutamate 189 with glutamine in photosystem II: ligation of glutamate 189 carboxylate to the manganese clusterQ46699072
Evidence from biosynthetically incorporated strontium and FTIR difference spectroscopy that the C-terminus of the D1 polypeptide of photosystem II does not ligate calciumQ46730780
Proximity of acetate, manganese, and exchangeable deuterons to tyrosine YZ. in acetate-inhibited photosystem II membranes: implications for the direct involvement of YZ. in water-splittingQ46811757
Manganese Cluster in Photosynthesis: Where Plants Oxidize Water to DioxygenQ46824692
Characterization of synthetic oxomanganese complexes and the inorganic core of the O2-evolving complex in photosystem II: evaluation of the DFT/B3LYP level of theory.Q46970498
Hydrogen bonding of redox-active tyrosine Z of photosystem II probed by FTIR difference spectroscopyQ47732925
X-ray absorption spectroscopy to analyze nuclear geometry and electronic structure of biological metal centers--potential and questions examined with special focus on the tetra-nuclear manganese complex of oxygenic photosynthesisQ47840538
Quantum mechanics/molecular mechanics study of the catalytic cycle of water splitting in photosystem II.Q47898550
Benchmarking approximate density functional theory. I. s/d excitation energies in 3d transition metal cationsQ48477630
The mechanism of photosynthetic water splitting.Q50747054
P433issue1
P921main subjectphotosystem IIQ22327014
P304page(s)91-114
P577publication date2008-05-16
P1433published inPhotosynthesis ResearchQ15756144
P1476titleComputational insights into the O2-evolving complex of photosystem II
P478volume97

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cites work (P2860)
Q81608246Computational analysis of photosynthetic systems
Q37400024Density functional theory
Q37120106Electrostatic effects on proton coupled electron transfer in oxomanganese complexes inspired by the oxygen-evolving complex of photosystem II.
Q34049865Evidence from FTIR difference spectroscopy of an extensive network of hydrogen bonds near the oxygen-evolving Mn(4)Ca cluster of photosystem II involving D1-Glu65, D2-Glu312, and D1-Glu329
Q46537816Hydration Preferences for Mn4Ca Cluster Models of Photosystem II: Location of Potential Substrate–Water Binding Sites
Q28287439Molecular mechanisms for generating transmembrane proton gradients
Q35894834Non-heme manganese catalase--the 'other' catalase
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Q27684626Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.
Q37638321The MOD-QM/MM Method: Applications to Studies of Photosystem II and DNA G-Quadruplexes
Q44259891The interaction of His337 with the Mn4Ca cluster of photosystem II.
Q36373904The open-cubane oxo-oxyl coupling mechanism dominates photosynthetic oxygen evolution: a comprehensive DFT investigation on O-O bond formation in the S4 state

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