Genome-wide investigation of the role of the tRNA nuclear-cytoplasmic trafficking pathway in regulation of the yeast Saccharomyces cerevisiae transcriptome and proteome

scientific article published on 26 August 2013

Genome-wide investigation of the role of the tRNA nuclear-cytoplasmic trafficking pathway in regulation of the yeast Saccharomyces cerevisiae transcriptome and proteome is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/MCB.00785-13
P8608Fatcat IDrelease_uspnzv3fjzhj5ntc5ey6prynzy
P932PMC publication ID3811888
P698PubMed publication ID23979602

P2093author name stringHui-Yi Chu
Anita K Hopper
P2860cites workMetabolism of sulfur amino acids in Saccharomyces cerevisiaeQ126946738
tRNAs promote nuclear import of HIV-1 intracellular reverse transcription complexesQ21146036
Bioconductor: open software development for computational biology and bioinformaticsQ21194861
Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAsQ24302072
Identification of a tRNA-specific nuclear export receptorQ24314506
Exp5 exports eEF1A via tRNA from nuclei and synergizes with other transport pathways to confine translation to the cytoplasmQ24317462
The role of exportin-t in selective nuclear export of mature tRNAsQ24533485
Exportin-5-mediated nuclear export of eukaryotic elongation factor 1A and tRNAQ24537714
Metabolism of sulfur amino acids in Saccharomyces cerevisiaeQ24643503
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profilingQ24651977
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomesQ24701143
Dissecting eukaryotic translation and its control by ribosome density mappingQ24793726
Partially phosphorylated Pho4 activates transcription of a subset of phosphate-responsive genesQ24806645
Transfer RNA post-transcriptional processing, turnover, and subcellular dynamics in the yeast Saccharomyces cerevisiaeQ27000788
Proofreading and aminoacylation of tRNAs before export from the nucleusQ50741048
Nuclear export of Ho endonuclease of yeast via Msn5.Q53452406
Rapid tRNA decay can result from lack of nonessential modifications.Q54342180
Order and intracellular location of the events involved in the maturation of a spliced tRNAQ57385026
Posttranscriptional regulation of the expression of MET2 gene of Saccharomyces cerevisiaeQ61072278
Coupling of GCN4 mRNA translational activation with decreased rates of polypeptide chain initiationQ69510445
Processing of intervening sequences: a new yeast mutant which fails to excise intervening sequences from precursor tRNAsQ71156037
Nucleocytoplasmic transport: Inside out regulationQ73168294
Whole genome genetic-typing in yeast using high-density oligonucleotide arraysQ78184011
Transfer RNA travels from the cytoplasm to organellesQ27004563
Structures of the tRNA export factor in the nuclear and cytosolic statesQ27657007
Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturationQ27657427
Nuclear export of microRNA precursorsQ27860686
Linear models and empirical bayes methods for assessing differential expression in microarray experimentsQ27860758
Summaries of Affymetrix GeneChip probe level dataQ27860888
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiaeQ27861085
Nuclear export of Far1p in response to pheromones requires the export receptor Msn5p/Ste21p.Q27930028
Role of nuclear pools of aminoacyl-tRNA synthetases in tRNA nuclear exportQ27930653
TLC1 RNA nucleo-cytoplasmic trafficking links telomerase biogenesis to its recruitment to telomeresQ27931281
Mtr10p functions as a nuclear import receptor for the mRNA-binding protein Npl3pQ27931616
Cytoplasmic splicing of tRNA in Saccharomyces cerevisiaeQ27932037
The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1Q27932088
Cell Cycle Activation of the Swi6p Transcription Factor Is Linked to Nucleocytoplasmic ShuttlingQ27932212
Retrograde movement of tRNAs from the cytoplasm to the nucleus in Saccharomyces cerevisiaeQ27932429
Possibility of cytoplasmic pre-tRNA splicing: the yeast tRNA splicing endonuclease mainly localizes on the mitochondriaQ27932795
Biogenesis of yeast telomerase depends on the importin mtr10Q27933016
High-resolution view of the yeast meiotic program revealed by ribosome profilingQ27934600
The two proteins Pat1p (Mrt1p) and Spb8p interact in vivo, are required for mRNA decay, and are functionally linked to Pab1pQ27935345
Inorganic phosphate deprivation causes tRNA nuclear accumulation via retrograde transport in Saccharomyces cerevisiaeQ27935988
A new yeast metabolon involving at least the two first enzymes of arginine biosynthesis: acetylglutamate synthase activity requires complex formation with acetylglutamate kinaseQ27936125
The receptor Msn5 exports the phosphorylated transcription factor Pho4 out of the nucleusQ27936804
A Los1p-independent pathway for nuclear export of intronless tRNAs in SaccharomycescerevisiaeQ27936922
tRNA nuclear export in saccharomyces cerevisiae: in situ hybridization analysisQ27937477
A distinct and parallel pathway for the nuclear import of an mRNA-binding proteinQ27938430
Regulation of tRNA bidirectional nuclear-cytoplasmic trafficking in Saccharomyces cerevisiaeQ27940273
Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiaeQ28131610
Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3' end formationQ28258510
Identification of a nuclear export receptor for tRNAQ28265348
GenePattern 2.0Q29614171
Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeastQ29614487
General translational repression by activators of mRNA decappingQ29614567
Translational regulation of GCN4 and the general amino acid control of yeastQ29615275
One-step transformation of yeast in stationary phaseQ29615614
A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeastQ29616852
Structural requirements for pre-microRNA binding and nuclear export by Exportin 5.Q30448922
Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcriptsQ30693119
Determinants of protein abundance and translation efficiency in S. cerevisiaeQ30839811
HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis.Q33338164
PAUSED, a putative exportin-t, acts pleiotropically in Arabidopsis development but is dispensable for viabilityQ33338619
PAUSED encodes the Arabidopsis exportin-t orthologQ33338625
Dissection of combinatorial control by the Met4 transcriptional complexQ33623809
Lithium toxicity in yeast is due to the inhibition of RNA processing enzymesQ33887852
Defects in tRNA processing and nuclear export induce GCN4 translation independently of phosphorylation of the alpha subunit of eukaryotic translation initiation factor 2Q33962665
Role of a tRNA base modification and its precursors in frameshifting in eukaryotesQ34648631
Glucose depletion rapidly inhibits translation initiation in yeastQ34690058
P-body components, Dhh1 and Pat1, are involved in tRNA nuclear-cytoplasmic dynamicsQ34807940
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiaeQ34918391
Retrograde nuclear import of tRNA precursors is required for modified base biogenesis in yeastQ35081487
Quantitative single cell monitoring of protein synthesis at subcellular resolution using fluorescently labeled tRNAQ35447715
Retrograde nuclear accumulation of cytoplasmic tRNA in rat hepatoma cells in response to amino acid deprivationQ35793223
Rapid and reversible nuclear accumulation of cytoplasmic tRNA in response to nutrient availabilityQ35901856
Extensive degradation of RNA precursors by the exosome in wild-type cellsQ36392961
Cloning and characterization of LOS1, a Saccharomyces cerevisiae gene that affects tRNA splicingQ36426631
tRNA's modifications bring order to gene expressionQ36691478
Nuclear tRNA aminoacylation and its role in nuclear export of endogenous tRNAs in Saccharomyces cerevisiaeQ36745203
Loss of translational control in yeast compromised for the major mRNA decay pathway.Q37011892
Genome-wide polysome profiling reveals an inflammation-responsive posttranscriptional operon in gamma interferon-activated monocytesQ37033670
Mechanisms of gene regulation in the general control of amino acid biosynthesis in Saccharomyces cerevisiae.Q37064119
A decade of surprises for tRNA nuclear-cytoplasmic dynamicsQ37080665
Sulfur amino acids regulate translational capacity and metabolic homeostasis through modulation of tRNA thiolationQ37133127
Yeast shuttling SR proteins Npl3p, Gbp2p, and Hrb1p are part of the translating mRNPs, and Npl3p can function as a translational repressorQ37622680
Cellular dynamics of tRNAs and their genesQ37636815
Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1.Q38310518
Exportin-5 orthologues are functionally divergent among species.Q39080462
Distinct determinants of tRNA recognition by the TrmD and Trm5 methyl transferasesQ39734656
Control of translation efficiency in yeast by codon-anticodon interactionsQ41334829
Coordination of tRNA nuclear export with processing of tRNA.Q41845245
Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathwaysQ42590201
Molecular cloning and regulation of the expression of the MET2 gene of Saccharomyces cerevisiae.Q43988349
tRNA actively shuttles between the nucleus and cytosol in yeastQ46499764
P4510describes a project that usesImageJQ1659584
limmaQ112236343
ImageQuantQ112270642
P433issue21
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
Saccharomyces cerevisiaeQ719725
P304page(s)4241-4254
P577publication date2013-08-26
P1433published inMolecular and Cellular BiologyQ3319478
P1476titleGenome-wide investigation of the role of the tRNA nuclear-cytoplasmic trafficking pathway in regulation of the yeast Saccharomyces cerevisiae transcriptome and proteome
P478volume33

Reverse relations

cites work (P2860)
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Q35293826In vivo biochemical analyses reveal distinct roles of β-importins and eEF1A in tRNA subcellular traffic
Q64229387Karyopherin Msn5 is involved in a novel mechanism controlling the cellular level of cell cycle regulators Cln2 and Swi5
Q38598295Mapping the spatial proteome of metastatic cells in colorectal cancer.
Q26749584Multiple Layers of Stress-Induced Regulation in tRNA Biology
Q41877120Nucleocytoplasmic shuttling of tRNAs and implication of the cytosolic Hsp70 system in tRNA import
Q50471156Nup100 regulates Saccharomyces cerevisiae replicative life span by mediating the nuclear export of specific tRNAs
Q64074471Oxidative Stress Triggers Selective tRNA Retrograde Transport in Human Cells during the Integrated Stress Response
Q38319396Proteomics reveals the importance of the dynamic redistribution of the subcellular location of proteins in breast cancer cells
Q35626115Quality Control Pathways for Nucleus-Encoded Eukaryotic tRNA Biosynthesis and Subcellular Trafficking
Q50121493Retrograde nuclear transport from the cytoplasm is required for tRNATyr maturation in T. brucei.
Q37421409Retrograde transfer RNA nuclear import provides a new level of tRNA quality control in Saccharomyces cerevisiae
Q34166891Separate responses of karyopherins to glucose and amino acid availability regulate nucleocytoplasmic transport
Q47322553Sharing the load: Mex67-Mtr2 cofunctions with Los1 in primary tRNA nuclear export.
Q34667770Systematic nucleo-cytoplasmic trafficking of proteins following exposure of MCF7 breast cancer cells to estradiol
Q64230440tRNA Processing and Subcellular Trafficking Proteins Multitask in Pathways for Other RNAs
Q47345259tRNA dynamics between the nucleus, cytoplasm and mitochondrial surface: Location, location, location

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