Sequence- and activity-based screening of microbial genomes for novel dehalogenases

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Sequence- and activity-based screening of microbial genomes for novel dehalogenases is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/J.1751-7915.2009.00155.X
P932PMC publication ID3815952
P698PubMed publication ID21255311
P5875ResearchGate publication ID49774664

P50authorJennifer L. GuthrieQ41580301
Elizabeth A. EdwardsQ43274817
Emil F. PaiQ47451347
Alexander F. YakuninQ47502542
P2093author name stringAlexei V Savchenko
Max Wong
Wing Yiu Chan
P2860cites workCLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
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Crystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4Q27644098
Biochemical and structural studies of a L-haloacid dehalogenase from the thermophilic archaeon Sulfolobus tokodaiiQ27653010
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Structure of 4-chlorobenzoyl coenzyme A dehalogenase determined to 1.8 A resolution: an enzyme catalyst generated via adaptive mutationQ27733127
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Dehalogenases applied to industrial-scale biocatalysisQ33712383
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Cloning and expression of the haloalkane dehalogenase gene dhmA from Mycobacterium avium N85 and preliminary characterization of DhmA.Q34055802
Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenasesQ34143337
Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database searchQ34326151
Purification and characterization of thermostable and nonthermostable 2-haloacid dehalogenases with different stereospecificities from Pseudomonas sp. strain YLQ34332991
Cloning, sequencing and expression in Escherichia coli of two Rhizobium sp. genes encoding haloalkanoate dehalogenases of opposite stereospecificityQ34383018
Alpha/Beta-hydrolase fold enzymes: structures, functions and mechanismsQ34946835
Structure and mechanism of bacterial dehalogenases: different ways to cleave a carbon-halogen bondQ35607746
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Crystallization and preliminary X-ray analysis of a novel haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94.Q37148811
PEDANT covers all complete RefSeq genomesQ37202780
Bacterial DL-2-haloacid dehalogenase from Pseudomonas sp. strain 113: gene cloning and structural comparison with D- and L-2-haloacid dehalogenasesQ39846314
Cloning and partial sequencing of an operon encoding two Pseudomonas putida haloalkanoate dehalogenases of opposite stereospecificityQ39933750
Complete nucleotide sequences and comparison of the structural genes of two 2-haloalkanoic acid dehalogenases from Pseudomonas sp. strain CBS3.Q39939248
Characterization of the haloacid dehalogenase from Xanthobacter autotrophicus GJ10 and sequencing of the dhlB geneQ39958324
Bacterial dehalogenases: biochemistry, genetics, and biotechnological applicationsQ40591488
Computational site-directed mutagenesis of haloalkane dehalogenase in position 172.Q40831153
Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificitiesQ42035600
Reaction mechanism of fluoroacetate dehalogenase from Moraxella sp. B.Q42538315
Cloning and sequencing of the fcbB gene encoding 4-chlorobenzoate-coenzyme A dehalogenase from Pseudomonas sp. DJ-12.Q42602270
Molecular biology of the 2-haloacid halidohydrolase IVa from Pseudomonas cepacia MBA4Q42602621
Cloning and sequence analysis of genes for dehalogenation of 4-chlorobenzoate from Arthrobacter sp. strain SUQ42606667
Lack of homology between two haloacetate dehalogenase genes encoded on a plasmid from Moraxella sp. strain BQ42607895
Cloning and nucleotide sequence of a D,L-haloalkanoic acid dehalogenase encoding gene from Alcaligenes xylosoxidans ssp. denitrificans ABIV.Q42655733
The Biology Workbench--a seamless database and analysis environment for the biologistQ47810422
Haloalkanoate dehalogenase II (DehE) of a Rhizobium sp.--molecular analysis of the gene and formation of carbon monoxide from trihaloacetate by the enzymeQ48040455
The role of spontaneous cap domain mutations in haloalkane dehalogenase specificity and evolutionQ48081223
Nucleotide sequence of the structural gene encoding a 2-haloalkanoic acid dehalogenase of Pseudomonas putida strain AJ1 and purification of the encoded proteinQ48178647
Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase familyQ48698153
Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26.Q52562919
Comprehensive site-directed mutagenesis of L-2-halo acid dehalogenase to probe catalytic amino acid residues.Q54611822
Cloning and sequence analysis of a plasmid-encoded 2-haloacid dehalogenase gene from Pseudomonas putida No. 109.Q54645912
Enzyme genomics: Application of general enzymatic screens to discover new enzymesQ57412347
Replacement of tryptophan residues in haloalkane dehalogenase reduces halide binding and catalytic activityQ72130229
Crystal structures of native and inactivated cis-3-chloroacrylic acid dehalogenase. Structural basis for substrate specificity and inactivation by (R)-oxirane-2-carboxylateQ79377348
Catalytic action of L-2-halo acid dehalogenase on long-chain L-2-haloalkanoic acids in organic solventsQ81579496
P433issue1
P304page(s)107-120
P577publication date2009-11-12
P1433published inMicrobial BiotechnologyQ15766695
P1476titleSequence- and activity-based screening of microbial genomes for novel dehalogenases
P478volume3

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cites work (P2860)
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Q31155485The role of dimer asymmetry and protomer dynamics in enzyme catalysis.

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