Allostery Wiring Map for Kinesin Energy Transduction and Its Evolution

scientific article published on 08 August 2016

Allostery Wiring Map for Kinesin Energy Transduction and Its Evolution is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1074/JBC.M116.733675
P932PMC publication ID5076506
P698PubMed publication ID27507814

P2093author name stringSunyoung Kim
Hoang Nguyen
Catherine D Kim
Jessica Richard
Elizabeth D Kim
P2860cites workATP hydrolysis in Eg5 kinesin involves a catalytic two-water mechanismQ24648526
ATPase mechanism of Eg5 in the absence of microtubules: insight into microtubule activation and allosteric inhibition by monastrolQ24650875
Switches, latches, and amplifiers: common themes of G proteins and molecular motorsQ24671028
Coupling of kinesin ATP turnover to translocation and microtubule regulation: one engine, many machinesQ27023528
Intrinsic Localized Modes in ProteinsQ27303773
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Crystal structure of the mitotic spindle kinesin Eg5 reveals a novel conformation of the neck-linkerQ27631520
Structure of a kinesin-tubulin complex and implications for kinesin motilityQ27685260
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Small molecule screen for candidate antimalarials targeting Plasmodium Kinesin-5Q27976471
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Protein sectors: evolutionary units of three-dimensional structureQ28256199
Analysis of the kinesin superfamily: insights into structure and functionQ28266160
Mechanochemical coupling in the myosin motor domain. II. Analysis of critical residuesQ28469141
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesQ28658397
Hot spots for allosteric regulation on protein surfacesQ28728550
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Evolutionarily conserved networks of residues mediate allosteric communication in proteinsQ29615036
Evolutionarily conserved pathways of energetic connectivity in protein familiesQ29615037
The way things move: looking under the hood of molecular motor proteinsQ29617532
A structural change in the kinesin motor protein that drives motilityQ29617533
Discrete breathers in a realistic coarse-grained model of proteinsQ30155531
Kinesin-5 allosteric inhibitors uncouple the dynamics of nucleotide, microtubule, and neck-linker binding sites.Q30368879
Energy transfer in molecular devices.Q30371023
Double-mutant cycles: a powerful tool for analyzing protein structure and functionQ30426766
Natural-like function in artificial WW domainsQ33223755
Detecting coevolution in and among protein domainsQ33305006
Patterns of kinesin evolution reveal a complex ancestral eukaryote with a multifunctional cytoskeletonQ33566221
Re-annotation is an essential step in systems biology modeling of functional genomics dataQ33586222
A new concept to reveal protein dynamics based on energy dissipationQ34056335
Controversies in modern evolutionary biology: the imperative for error detection and quality controlQ34118167
Disparity in allosteric interactions of monastrol with Eg5 in the presence of ADP and ATP: a difference FT-IR investigationQ34337789
A "holistic" kinesin phylogeny reveals new kinesin families and predicts protein functions.Q34483464
Evaluating the accuracy and efficiency of multiple sequence alignment methodsQ34710880
Large conformational changes in a kinesin motor catalyzed by interaction with microtubulesQ35128890
Annotation error in public databases: misannotation of molecular function in enzyme superfamiliesQ21145347
Dendroscope: An interactive viewer for large phylogenetic treesQ21284219
Disentangling direct from indirect co-evolution of residues in protein alignmentsQ21563484
Three myosin V structures delineate essential features of chemo-mechanical transductionQ24310086
Propagating conformational changes over long (and short) distances in proteinsQ24555781
Allosteric drug discrimination is coupled to mechanochemical changes in the kinesin-5 motor coreQ24598362
Crystal structure of the kinesin motor domain reveals a structural similarity to myosinQ24601210
A new kinesin tree.Q35600835
The role of dynamics in allosteric regulationQ35607757
Quantitative interpretations of double mutations of enzymesQ36020630
Molecular dynamics of an alpha-helical polypeptide: Temperature dependence and deviation from harmonic behaviorQ36283925
New insight into long-range nonadditivity within protein double-mutant cyclesQ36342306
Protein co-evolution, co-adaptation and interactionsQ36914675
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other treesQ39838204
A piston model for transmembrane signaling of the aspartate receptorQ41689679
Role of the kinesin neck linker and catalytic core in microtubule-based motilityQ41719999
Sequence-specific long range networks in PSD-95/discs large/ZO-1 (PDZ) domains tune their binding selectivityQ41948759
Drosophila kinesin minimal motor domain expressed in Escherichia coli. Purification and kinetic characterizationQ42501677
Long-range energy transfer in proteinsQ43243126
Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic treesQ45331108
Reducing phylogenetic bias in correlated mutation analysisQ46198213
Multivariate analysis of conserved sequence-structure relationships in kinesins: coupling of the active site and a tubulin-binding sub-domainQ46743126
Evolution-based design of proteins.Q47638548
On evolutionary conservation of thermodynamic coupling in proteinsQ47944915
Multiple alignment by aligning alignments.Q50676294
SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.Q51482729
Discrete breathers in nonlinear network models of proteins.Q51895729
Prediction of an inter-residue interaction in the chaperonin GroEL from multiple sequence alignment is confirmed by double-mutant cycle analysis.Q54635185
Maximum likelihood methods reveal conservation of function among closely related kinesin familiesQ56900966
The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus)Q61948855
Long-range, small magnitude nonadditivity of mutational effects in proteinsQ72607096
P433issue40
P407language of work or nameEnglishQ1860
P304page(s)20932-20945
P577publication date2016-08-08
P1433published inJournal of Biological ChemistryQ867727
P1476titleAllostery Wiring Map for Kinesin Energy Transduction and Its Evolution
P478volume291

Reverse relations

cites work (P2860)
Q48205008Altered chemomechanical coupling causes impaired motility of the kinesin-4 motors KIF27 and KIF7.
Q52728128Kinesin 6 Regulation in Drosophila Female Meiosis by the Non-conserved N- and C- Terminal Domains.
Q55286760Mutations close to a hub residue affect the distant active site of a GH1 β-glucosidase.
Q92287367Small molecule allosteric uncoupling of microtubule depolymerase activity from motility in human Kinesin-5 during mitotic spindle assembly
Q41596762The divergent mitotic kinesin MKLP2 exhibits atypical structure and mechanochemistry.

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