| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2013PNAS..110E4708B |
| P356 | DOI | 10.1073/PNAS.1320077110 |
| P932 | PMC publication ID | 3856838 |
| P698 | PubMed publication ID | 24248370 |
| P5875 | ResearchGate publication ID | 258701818 |
| P50 | author | Michele Parrinello | Q479473 |
| Alessandro Barducci | Q45938114 | ||
| Massimiliano Bonomi | Q64667591 | ||
| P2093 | author name string | Meher K Prakash | |
| P2860 | cites work | Improved side-chain torsion potentials for the Amber ff99SB protein force field | Q24616749 |
| Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization | Q24625084 | ||
| Comparison of simple potential functions for simulating liquid water | Q26778447 | ||
| Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method | Q27336076 | ||
| NMR structure of a monomeric intermediate on the evolutionarily optimized assembly pathway of a small trimerization domain | Q27654654 | ||
| Structure of bacteriophage T4 fibritin: a segmented coiled coil and the role of the C-terminal domain | Q27741855 | ||
| GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation | Q27860944 | ||
| Influence of preformed Asp23-Lys28 salt bridge on the conformational fluctuations of monomers and dimers of Abeta peptides with implications for rates of fibril formation | Q28388665 | ||
| Atomic-Level Characterization of the Structural Dynamics of Proteins | Q29616380 | ||
| Fast and accurate predictions of protein NMR chemical shifts from interatomic distances. | Q30380497 | ||
| Characterization of the conformational equilibrium between the two major substates of RNase A using NMR chemical shifts | Q30412823 | ||
| Foldon, the natural trimerization domain of T4 fibritin, dissociates into a monomeric A-state form containing a stable beta-hairpin: atomic details of trimer dissociation and local beta-hairpin stability from residual dipolar couplings | Q30976129 | ||
| Fundamental aspects of protein-protein association kinetics | Q33893739 | ||
| Escaping free-energy minima | Q34151010 | ||
| Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts | Q34199813 | ||
| Dimerization of the p53 oligomerization domain: identification of a folding nucleus by molecular dynamics simulations. | Q34374840 | ||
| Engineering trimeric fibrous proteins based on bacteriophage T4 adhesins | Q34663520 | ||
| COMPUTING: Screen Savers of the World Unite! | Q34670167 | ||
| Highly stable trimers formed by human immunodeficiency virus type 1 envelope glycoproteins fused with the trimeric motif of T4 bacteriophage fibritin | Q34999293 | ||
| Speeding molecular recognition by using the folding funnel: the fly-casting mechanism | Q35189399 | ||
| Monomer adds to preformed structured oligomers of Abeta-peptides by a two-stage dock-lock mechanism. | Q35578410 | ||
| The power of two: protein dimerization in biology | Q35926485 | ||
| Elucidating transient macromolecular interactions using paramagnetic relaxation enhancement | Q36259474 | ||
| Exploring protein aggregation and self-propagation using lattice models: phase diagram and kinetics | Q36639277 | ||
| Replica exchange simulations of transient encounter complexes in protein-protein association. | Q36861690 | ||
| The courtship of proteins: understanding the encounter complex | Q37411740 | ||
| Dynamics and mechanisms of coupled protein folding and binding reactions | Q37963143 | ||
| Conformational propensities of intrinsically disordered proteins from NMR chemical shifts | Q38116495 | ||
| Linking well-tempered metadynamics simulations with experiments. | Q40283073 | ||
| Diffusional encounter of barnase and barstar | Q42150613 | ||
| Stabilization of short collagen-like triple helices by protein engineering | Q43607417 | ||
| Domain organization, folding and stability of bacteriophage T4 fibritin, a segmented coiled-coil protein | Q43887801 | ||
| Kinetic advantage of intrinsically disordered proteins in coupled folding-binding process: a critical assessment of the "fly-casting" mechanism | Q44367549 | ||
| Adenovirus fibre shaft sequences fold into the native triple beta-spiral fold when N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif | Q45877261 | ||
| Reconstructing the equilibrium Boltzmann distribution from well-tempered metadynamics. | Q46022137 | ||
| Efficient Simulation of Explicitly Solvated Proteins in the Well-Tempered Ensemble | Q46626474 | ||
| Very fast folding and association of a trimerization domain from bacteriophage T4 fibritin | Q47919362 | ||
| Atomistic description of the folding of a dimeric protein | Q47944536 | ||
| Free-energy landscape for beta hairpin folding from combined parallel tempering and metadynamics | Q51931397 | ||
| Effect of urea on the β-hairpin conformational ensemble and protein denaturation mechanism. | Q53088094 | ||
| PLUMED: A portable plugin for free-energy calculations with molecular dynamics | Q56766568 | ||
| Determination of Secondary Structure Populations in Disordered States of Proteins Using Nuclear Magnetic Resonance Chemical Shifts | Q57831878 | ||
| Enhanced Sampling in the Well-Tempered Ensemble | Q85079127 | ||
| Replica Temperatures for Uniform Exchange and Efficient Roundtrip Times in Explicit Solvent Parallel Tempering Simulations | Q86804259 | ||
| P433 | issue | 49 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | energy landscape | Q5377166 |
| P304 | page(s) | E4708-13 | |
| P577 | publication date | 2013-11-18 | |
| P1433 | published in | Proceedings of the National Academy of Sciences of the United States of America | Q1146531 |
| P1476 | title | Free-energy landscape of protein oligomerization from atomistic simulations | |
| P478 | volume | 110 |
| Q31112505 | All-Atom Structural Models of the Transmembrane Domains of Insulin and Type 1 Insulin-Like Growth Factor Receptors |
| Q47267177 | Binding Modes of Teixobactin to Lipid II: Molecular Dynamics Study |
| Q37697030 | Collective variable approaches for single molecule flexible fitting and enhanced sampling |
| Q47677852 | Complete protein-protein association kinetics in atomic detail revealed by molecular dynamics simulations and Markov modelling |
| Q48043997 | Dimerization and conformation-related free energy landscapes of dye-tagged amyloid-β12-28 linked to FRET experiments |
| Q41842705 | Dimerization of the EphA1 receptor tyrosine kinase transmembrane domain: Insights into the mechanism of receptor activation. |
| Q36185635 | Exploring Flexibility of Progesterone Receptor Ligand Binding Domain Using Molecular Dynamics |
| Q38965191 | Insulin mimetic peptide S371 folds into a helical structure. |
| Q90304563 | Interplay of cysteine exposure and global protein dynamics in small-molecule recognition by a regulator of G-protein signaling protein |
| Q43496443 | Investigation of alanine mutations affecting insulin-like growth factor (IGF) I binding to IGF binding proteins |
| Q31035962 | Josephin Domain Structural Conformations Explored by Metadynamics in Essential Coordinates |
| Q35075635 | Mechanistic insight into the functional transition of the enzyme guanylate kinase induced by a single mutation |
| Q30844532 | On the role of residue phosphorylation in 14-3-3 partners: AANAT as a case study |
| Q28540825 | P-loop conformation governed crizotinib resistance in G2032R-mutated ROS1 tyrosine kinase: clues from free energy landscape |
| Q38615490 | Prion protein β2-α2 loop conformational landscape |
| Q46460031 | Probing oligomerization of amyloid beta peptide in silico |
| Q31039692 | Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell |
| Q47094724 | Simulation of Reversible Protein-Protein Binding and Calculation of Binding Free Energies Using Perturbed Distance Restraints |
| Q60923976 | The Role of Hydrogen Bonding in the Folding/Unfolding Process of Hydrated Lysozyme: A Review of Recent NMR and FTIR Results |
| Q86892564 | Vector description of electric and hydrophobic interactions in protein homodimers |
| Q33779909 | αB-crystallin is a sensor for assembly intermediates and for the subunit topology of desmin intermediate filaments. |
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