| scholarly article | Q13442814 |
| P50 | author | Valerie Daggett | Q7911257 |
| P2093 | author name string | Peter B Law | |
| P2860 | cites work | Local water bridges and protein conformational stability | Q41899065 |
| Host−Guest Study of Left-Handed Polyproline II Helix Formation | Q43809923 | ||
| Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations | Q44637148 | ||
| Role of solvent in determining conformational preferences of alanine dipeptide in water. | Q44775722 | ||
| The conformation of tetraalanine in water determined by polarized Raman, FT-IR, and VCD spectroscopy | Q44783193 | ||
| Statistical and molecular dynamics studies of buried waters in globular proteins | Q46529625 | ||
| Region-specific role of water in collagen unwinding and assembly | Q46668125 | ||
| Methods for molecular dynamics simulations of protein folding/unfolding in solution | Q47609594 | ||
| A microscopic view of peptide and protein solvation | Q47614067 | ||
| Simulations of the structural and dynamical properties of denatured proteins: the “molten coil” state of bovine pancreatic trypsin inhibitor | Q47625640 | ||
| Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations | Q47630147 | ||
| Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures | Q47631461 | ||
| Molecular dynamics simulations of helix denaturation | Q47637533 | ||
| Distributions of water around amino acid residues in proteins | Q47643805 | ||
| Polyproline II helix is the preferred conformation for unfolded polyalanine in water | Q47715263 | ||
| Conformational properties of a peptide model for unfolded alpha-helices | Q51893400 | ||
| Code for collagen's stability deciphered | Q57961164 | ||
| Water-inserted alpha-helical segments implicate reverse turns as folding intermediates | Q69633330 | ||
| Circular dichroism of poly-L-proline in an unordered conformation | Q72172886 | ||
| Molecular dynamics simulations of polypeptide conformations in water: A comparison of alpha, beta, and poly(pro)II conformations | Q78136342 | ||
| Origin of the sequence-dependent polyproline II structure in unfolded peptides | Q81282353 | ||
| The Protein Data Bank | Q24515306 | ||
| A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary | Q24647013 | ||
| Molecular mimicry enables competitive recruitment by a natively disordered protein | Q27644179 | ||
| Crystal and Molecular Structure of a Collagen-Like Peptide at 1.9 Å Resolution | Q27729918 | ||
| Hydration structure of a collagen peptide | Q27732212 | ||
| Crystal structures of the human p56lck SH2 domain in complex with two short phosphotyrosyl peptides at 1.0 A and 1.8 A resolution | Q27732619 | ||
| UCSF Chimera--a visualization system for exploratory research and analysis | Q27860666 | ||
| Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features | Q27860675 | ||
| The structure of "unstructured" regions in peptides and proteins: role of the polyproline II helix in protein folding and recognition | Q30160324 | ||
| The Protein Coil Library: a structural database of nonhelix, nonstrand fragments derived from the PDB. | Q30845175 | ||
| Further evidence for the absence of polyproline II stretch in the XAO peptide. | Q31097580 | ||
| A novel method reveals that solvent water favors polyproline II over beta-strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA). | Q31133660 | ||
| Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations | Q31152585 | ||
| The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins | Q31172579 | ||
| Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding | Q33179891 | ||
| Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library | Q33218650 | ||
| Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data | Q33328150 | ||
| Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: Description of the folding pathway | Q33702131 | ||
| Unusual compactness of a polyproline type II structure | Q33920025 | ||
| Polyproline II structure in a sequence of seven alanine residues. | Q34034318 | ||
| Significance of bound water to local chain conformations in protein crystals. | Q34068734 | ||
| Polyproline II propensities from GGXGG peptides reveal an anticorrelation with beta-sheet scales | Q34212739 | ||
| Structural basis of FFAT motif-mediated ER targeting | Q34432371 | ||
| Polyproline II conformation is one of many local conformational states and is not an overall conformation of unfolded peptides and proteins. | Q34478711 | ||
| Is polyproline II a major backbone conformation in unfolded proteins? | Q34989900 | ||
| Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution | Q35246273 | ||
| The alanine-rich XAO peptide adopts a heterogeneous population, including turn-like and polyproline II conformations | Q35800301 | ||
| Conformation of the backbone in unfolded proteins. | Q36472811 | ||
| Solvent molecules bridge the mechanical unfolding transition state of a protein | Q36491231 | ||
| Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation | Q36671524 | ||
| Atomic-level characterization of disordered protein ensembles | Q36717589 | ||
| A simple model for polyproline II structure in unfolded states of alanine-based peptides | Q38270402 | ||
| P4510 | describes a project that uses | SQL | Q47607 |
| P433 | issue | 1 | |
| P921 | main subject | crystal structure | Q895901 |
| P304 | page(s) | 27-33 | |
| P577 | publication date | 2010-01-01 | |
| P1433 | published in | Protein Engineering Design and Selection | Q15762396 |
| P1476 | title | The relationship between water bridges and the polyproline II conformation: a large-scale analysis of molecular dynamics simulations and crystal structures | |
| P478 | volume | 23 |
| Q33950636 | Conformational Changes of Trialanine Induced by Direct Interactions between Alanine Residues and Alcohols in Binary Mixtures of Water with Glycerol and Ethanol |
| Q51362334 | Conformational analysis of short polar side-chain amino-acids through umbrella sampling and DFT calculations |
| Q30009896 | Polyproline-II Helix in Proteins: Structure and Function |
| Q86479866 | The structure of poly-l-lysine in different solvents |
| Q84582698 | Water interaction differences determine the relative energetic stability of the polyproline II conformation of the alanine dipeptide in aqueous environments |
| Q33863993 | Water-Mediated Conformations of the Alanine Dipeptide as Revealed by Distributed Umbrella Sampling Simulations, Quantum Mechanics Based Calculations, and Experimental Data |
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