Genome-Wide Association Study and QTL Mapping Reveal Genomic Loci Associated with Fusarium Ear Rot Resistance in Tropical Maize Germplasm

scientific article published on 14 October 2016

Genome-Wide Association Study and QTL Mapping Reveal Genomic Loci Associated with Fusarium Ear Rot Resistance in Tropical Maize Germplasm is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1534/G3.116.034561
P932PMC publication ID5144952
P698PubMed publication ID27742723

P50authorJiafa ChenQ59679513
George MahukuQ59827270
P2093author name stringJianyu Wu
Rosemary Shrestha
Junqiang Ding
Chunhua Mu
Hongjian Zheng
P2860cites workPopulation structure and eigenanalysisQ21145248
Inference of population structure using multilocus genotype dataQ24548114
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databasesQ24643451
PLINK: a tool set for whole-genome association and population-based linkage analysesQ24677407
A modified algorithm for the improvement of composite interval mappingQ24685266
Exposure to fumonisins and the occurrence of neural tube defects along the Texas-Mexico borderQ25257385
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequenciesQ26734731
The structure of haplotype blocks in the human genomeQ27860500
Principal components analysis corrects for stratification in genome-wide association studiesQ27860975
A first-generation haplotype map of maizeQ28266729
A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genomeQ28741696
genalex 6: genetic analysis in Excel. Population genetic software for teaching and researchQ29642132
Validation of Dwarf8 polymorphisms associated with flowering time in elite European inbred lines of maize (Zea mays L.)Q59905963
BioMercator: integrating genetic maps and QTL towards discovery of candidate genesQ79859323
Haplotype diversity: the link between statistical and biological associationQ81195086
A new QTL for resistance to Fusarium ear rot in maizeQ84074900
Genome-wide association study reveals a set of genes associated with resistance to the Mediterranean corn borer (Sesamia nonagrioides L.) in a maize diversity panel.Q30621206
Biodiversity of Fusarium species in Mexico associated with ear rot in maize, and their identification using a phylogenetic approachQ33268860
Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markersQ33521201
Combining linkage and association mapping identifies RECEPTOR-LIKE PROTEIN KINASE1 as an essential Arabidopsis shoot regeneration gene.Q33730745
Combined linkage and association studies show that HLA class II variants control levels of antibodies against Epstein-Barr virus antigensQ33905569
Multiple trait analysis of genetic mapping for quantitative trait lociQ33965447
A hitchhiker's guide to the MADS world of plantsQ34024442
Comparative SNP and haplotype analysis reveals a higher genetic diversity and rapider LD decay in tropical than temperate germplasm in maizeQ34031538
Genome-wide association study identifies candidate genes that affect plant height in Chinese elite maize (Zea mays L.) inbred linesQ34117379
BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithmsQ34290666
Joint linkage-linkage disequilibrium mapping is a powerful approach to detecting quantitative trait loci underlying drought tolerance in maizeQ34320527
Combined linkage and association sib-pair analysis for quantitative traitsQ34388656
Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thalianaQ34397092
The plant short-chain dehydrogenase (SDR) superfamily: genome-wide inventory and diversification patternsQ34483453
Lessons from Dwarf8 on the strengths and weaknesses of structured association mappingQ34597936
Inclusive composite interval mapping (ICIM) for digenic epistasis of quantitative traits in biparental populationsQ34710633
Genome-wide association study of Fusarium ear rot disease in the U.S.A. maize inbred line collection.Q34998271
Plant peroxidase gene expression and functionQ35378063
Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maizeQ35750618
Genomic Dissection of Leaf Angle in Maize (Zea mays L.) Using a Four-Way Cross Mapping PopulationQ35824393
Molecular characterization of diverse CIMMYT maize inbred lines from eastern and southern Africa using single nucleotide polymorphic markersQ35996379
Genome-wide association and genomic prediction of resistance to maize lethal necrosis disease in tropical maize germplasm.Q36065415
Genetic association mapping and genome organization of maizeQ36407742
A genome-wide association study reveals genes associated with fusarium ear rot resistance in a maize core diversity panel.Q37272965
The genetic architecture of disease resistance in maize: a synthesis of published studiesQ37305909
TASSEL: software for association mapping of complex traits in diverse samplesQ39512996
A unified mixed-model method for association mapping that accounts for multiple levels of relatednessQ39513162
Maize association population: a high-resolution platform for quantitative trait locus dissectionQ40364631
Arabidopsis DMR6 encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildewQ45040577
Evolutionary analysis of three gibberellin oxidase genesin rice, Arabidopsis, and soybeanQ45349960
Sources of resistance to fumonisin accumulation in grain and fusarium ear and kernel rot of cornQ46303059
Genome-wide association study (GWAS) of resistance to head smut in maizeQ46440810
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS worldQ48238102
A Biochemical Phenotype for a Disease Resistance Gene of Maize.Q54277649
P4510describes a project that usesgenome-wide association studyQ1098876
P433issue12
P921main subjectgenome-wide association studyQ1098876
data sharingQ5227350
P304page(s)3803-3815
P577publication date2016-10-14
P1433published inG3Q5512701
P1476titleGenome-Wide Association Study and QTL Mapping Reveal Genomic Loci Associated with Fusarium Ear Rot Resistance in Tropical Maize Germplasm
P478volume6

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cites work (P2860)
Q64108892Assessing the genetic diversity and characterizing genomic regions conferring Tan Spot resistance in cultivated rye
Q64252644Diverse Components of Resistance to Infection and Fumonisin Contamination in Four Maize Recombinant Inbred Families
Q90393756Genetic analysis of cob resistance to F. verticillioides: another step towards the protection of maize from ear rot
Q92100560Genetic architecture of maize chlorotic mottle virus and maize lethal necrosis through GWAS, linkage analysis and genomic prediction in tropical maize germplasm
Q64083616Genome-wide association analysis for fumonisin content in maize kernels
Q64058604Genome-wide haplotype-based association analysis of key traits of plant lodging and architecture of maize identifies major determinants for leaf angle: hapLA4
Q50217968Genomic-based-breeding tools for tropical maize improvement
Q64074312Unravelling the genetic basis of Fusarium seedling rot resistance in the MAGIC maize population: novel targets for breeding

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