Proteomic technology in the design of new effective antibacterial vaccines

scientific article published on June 2009

Proteomic technology in the design of new effective antibacterial vaccines is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1586/EPR.09.47
P698PubMed publication ID19489702
P5875ResearchGate publication ID26260426

P50authorMichał DadlezQ63859587
Elzbieta K Jagusztyn-KrynickaQ74577690
Paula Roszczenko-JasińskaQ100535364
P2093author name stringAnna Grabowska
P2860cites workGenome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"Q22066389
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteriaQ22122503
Peptide and protein sequence analysis by electron transfer dissociation mass spectrometryQ24561920
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MSQ24680943
DNA sequence conservation between the Bacillus anthracis pXO2 plasmid and genomic sequence from closely related bacteriaQ24795197
Anthrax vaccine design: strategies to achieve comprehensive protection against spore, bacillus, and toxinQ24796044
Probability-based protein identification by searching sequence databases using mass spectrometry dataQ27860736
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein databaseQ27861106
Quantitative analysis of complex protein mixtures using isotope-coded affinity tagsQ28145324
Performance characteristics of electron transfer dissociation mass spectrometryQ28239215
Extending top-down mass spectrometry to proteins with masses greater than 200 kilodaltonsQ28267169
Mass spectrometry sampling under ambient conditions with desorption electrospray ionizationQ28288035
Mass spectrometry-based proteomics turns quantitativeQ28291379
Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltonsQ28293769
Approaches to the study of the cell secretomeQ28297398
Comprehensive analysis of exported proteins from Mycobacterium tuberculosis H37RvQ28487308
Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profilingQ28487482
Comparative proteome analysis of Mycobacterium tuberculosis grown under aerobic and anaerobic conditionsQ28487496
Identification of novel bacterial plasminogen-binding proteins in the human pathogen Mycobacterium tuberculosisQ28909146
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometryQ29547311
Electrospray ionization for mass spectrometry of large biomoleculesQ29618001
Orbitrap Mass Analyzer – Overview and Applications in ProteomicsQ30040247
Bacterial membrane proteomics.Q30371935
Informatics and data management in proteomicsQ30767072
Genome-based bioinformatic selection of chromosomal Bacillus anthracis putative vaccine candidates coupled with proteomic identification of surface-associated antigensQ30783500
The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometerQ30842803
Exploiting the complementary nature of LC/MALDI/MS/MS and LC/ESI/MS/MS for increased proteome coverageQ30979833
An emerging cyberinfrastructure for biodefense pathogen and pathogen-host dataQ31135454
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics dataQ31141751
Safety profile of pneumococcal conjugate vaccines: systematic review of pre- and post-licensure dataQ31158788
Proteomics reveals open reading frames in Mycobacterium tuberculosis H37Rv not predicted by genomicsQ31950055
Prevention of pneumococcal disease in mice immunized with conserved surface-accessible proteinsQ33202131
Identification of novel immunogenic proteins of Shigella flexneri 2a by proteomic methodologiesQ33204608
Comparative secretome analyses of three Bacillus anthracis strains with variant plasmid contentsQ33215553
Identification of a protein subset of the anthrax spore immunome in humans immunized with the anthrax vaccine adsorbed preparationQ33222054
Proteomic analysis of proteins expressed by Helicobacter pylori under oxidative stressQ33223049
Advances in functional protein microarray technologyQ33226411
Immunoproteomics of outer membrane proteins and extracellular proteins of Shigella flexneri 2a 2457T.Q33226954
Identification of vaccine candidate antigens of an ESBL producing Klebsiella pneumoniae clinical strain by immunoproteome analysis.Q33230146
ICAT-based comparative proteomic analysis of non-replicating persistent Mycobacterium tuberculosisQ33230269
Mass spectrometry and protein analysisQ33239890
Proteomic profiling and identification of immunodominant spore antigens of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis.Q33256633
Mass spectrometry technologies for proteomicsQ33268106
From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approachQ33279073
Comparative proteomic analysis of cell lines and scrapings of the human intestinal epitheliumQ33281085
Quantitative profile of the uropathogenic Escherichia coli outer membrane proteome during growth in human urineQ33285142
Identification of membrane-associated proteins from Campylobacter jejuni strains using complementary proteomics technologiesQ33311518
Discovery of a novel class of highly conserved vaccine antigens using genomic scale antigenic fingerprinting of pneumococcus with human antibodiesQ33312893
Proteomic analyses of a robust versus a poor chicken gastrointestinal colonizing isolate of Campylobacter jejuniQ46921777
Identification and assessment of new vaccine candidates for group A streptococcal infectionsQ47218040
The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification DataQ47788235
Gel based isoelectric focusing of peptides and the utility of isoelectric point in protein identificationQ48006721
Direct analysis of the extracellular proteome from two strains of Helicobacter pyloriQ50993599
Characterization of the outer membrane protein profile from disease-related Helicobacter pylori isolates by subcellular fractionation and nano-LC FT-ICR MS analysisQ51109701
A protein chip approach for high-throughput antigen identification and characterizationQ51579727
Immunodominant Francisella tularensis antigens identified using proteome microarrayQ51579914
Comparative in silico analysis of two vaccine candidates for group A streptococcus predicts that they both may have similar safety profilesQ51922574
Safety and immunogenicity of an intramuscular Helicobacter pylori vaccine in noninfected volunteers: a phase I studyQ51963367
Analyzing Mycobacterium tuberculosis proteomes for candidate vaccine epitopesQ51979170
Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresisQ52671958
An improved strategy for selective and efficient enrichment of integral plasma membrane proteins of mycobacteriaQ52926530
Proteins unique to intraphagosomally grown Mycobacterium tuberculosisQ52934021
Subproteomes of soluble and structure-bound Helicobacter pylori proteins analyzed by two-dimensional gel electrophoresis and mass spectrometryQ52940101
Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli.Q53530186
Analysis of growth phase-dependent proteome profiles reveals differential regulation of mRNA and protein in Helicobacter pyloriQ53537445
Outer membrane vesicles from group B Neisseria meningitidis delta gna33 mutant: proteomic and immunological comparison with detergent-derived outer membrane vesiclesQ54471122
Reporting protein identification data: the next generation of guidelines.Q55041930
Guidelines for reporting the use of mass spectrometry in proteomics.Q55050369
The Development and Impact of Tuberculosis VaccinesQ56766328
A combined immuno-informatics and structure-based modeling approach for prediction of T cell epitopes of secretory proteins of Mycobacterium tuberculosisQ57038760
Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitationQ57441692
Protection induced by pneumococcal surface protein A (PspA) is enhanced by conjugation to a Streptococcus pneumoniae capsular polysaccharideQ58768117
Proteome analysis reveals adaptation of Pseudomonas aeruginosa to the cystic fibrosis lung environmentQ59334720
Advances in potential M-protein peptide-based vaccines for preventing rheumatic fever and rheumatic heart diseaseQ36685555
The current status of Helicobacter pylori vaccines: a reviewQ36740010
Hfq structure, function and ligand bindingQ36774884
Francisella tularensis genomics and proteomicsQ36792217
Proteomic analysis of protein complexesQ36886042
Protein abundance ratios for global studies of prokaryotesQ36886066
Proteins that interact with bacterial small RNA regulatorsQ36892912
Structural biology of plasmodial proteinsQ36944146
Methods for mapping of interaction networks involving membrane proteins.Q36952791
Proteome of the Escherichia coli envelope and technological challenges in membrane proteome analysisQ36955319
Clinical proteomics: discovery of cancer biomarkers using mass spectrometry and bioinformatics approaches--a prostate cancer perspectiveQ36960733
Postgenomics of Neisseria meningitidis for vaccines developmentQ36973781
Helicobacter pylori: immunoproteomics related to different pathologies.Q36973785
Vaccines: countering anthrax: vaccines and immunoglobulinsQ37048682
Proteomic methods for drug target discoveryQ37087549
Proteomics-driven cancer biomarker discovery: looking to the future.Q37092894
Application of proteomics technology for analyzing the interactions between host cells and intracellular infectious agents.Q37093742
Capillary electrophoresis-electrospray-mass spectrometry in peptide analysis and peptidomics.Q37137738
Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE): advances and perspectivesQ37161409
Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactomeQ37248350
Strategies for shotgun identification of integral membrane proteins by tandem mass spectrometryQ37264063
Multidimensional LC separations in shotgun proteomicsQ37282675
The ClpP protease of Streptococcus pneumoniae modulates virulence gene expression and protects against fatal pneumococcal challengeQ37524127
A European pathogenic microorganism proteome database: construction and maintenanceQ37857057
Shedding & shaving: disclosure of proteomic expressions on a bacterial faceQ40119412
Membrane subproteomic analysis of Mycobacterium bovis bacillus Calmette-GuérinQ40166376
Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophagesQ40246323
Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditionsQ40282069
Gene expression and protein profiling of AGS gastric epithelial cells upon infection with Helicobacter pyloriQ40376591
Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics.Q40460045
A rapid and universal tandem-purification strategy for recombinant proteinsQ41910068
Immunoproteomics to examine cystic fibrosis host interactions with extracellular Pseudomonas aeruginosa proteinsQ42260006
Bacillus anthracis secretome time course under host-simulated conditions and identification of immunogenic proteinsQ42414538
Web-accessible proteome databases for microbial researchQ42629021
Protein-Sequence Polymorphisms and Post-translational Modifications in Proteins from Human Saliva using Top-Down Fourier-transform Ion Cyclotron Resonance Mass SpectrometryQ42793784
Proteomic analysis and identification of Streptococcus pyogenes surface-associated proteinsQ42845586
Membrane and membrane-associated proteins in Triton X-114 extracts of Mycobacterium bovis BCG identified using a combination of gel-based and gel-free fractionation strategiesQ44465754
Identification of a novel plasmin(ogen)-binding motif in surface displayed alpha-enolase of Streptococcus pneumoniaeQ44492747
Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome.Q45284162
Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry.Q45997049
Streptococcus pneumoniae: proteomics of surface proteins for vaccine developmentQ46885129
Insights into host responses against pathogens from transcriptional profiling.Q36087019
Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq.Q36092625
A universal vaccine for serogroup B meningococcusQ36101910
Advances in proteomic workflows for systems biologyQ36103071
TB subunit vaccines--putting the pieces togetherQ36119186
Anthrax vaccines: a development updateQ36243294
Helicobacter pylori vaccine development: facing the challengeQ36262058
The role of RNAs in the regulation of virulence-gene expression.Q36418318
Post-genomic vaccine developmentQ36485259
Towards a vaccine against rheumatic feverQ36502298
Shotgun proteomics using the iTRAQ isobaric tagsQ36505967
A high efficiency cloning and expression system for proteomic analysisQ36519159
Microbial genomes and vaccine design: refinements to the classical reverse vaccinology approachQ36556887
Future directions for electrospray ionization for biological analysis using mass spectrometryQ36573567
Discovering differential protein expression caused by CagA-induced ERK pathway activation in AGS cells using the SELDI-ProteinChip platformQ33315282
Data analysis and bioinformatics tools for tandem mass spectrometry in proteomicsQ33315747
Proteomic characterization of the whole secretome of Legionella pneumophila and functional analysis of outer membrane vesiclesQ33318183
MALDI-TOF mass spectrometry as a tool for differentiation of invasive and noninvasive Streptococcus pyogenes isolatesQ33341135
Evaluation of a standardized method of protein purification and identification after discovery by mass spectrometry.Q33347348
High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an exampleQ33348771
4-Chloro-alpha-cyanocinnamic acid is an advanced, rationally designed MALDI matrixQ33362852
Biotinylation reagents for the study of cell surface proteinsQ33365633
Assembling proteomics data as a prerequisite for the analysis of large scale experimentsQ33402633
Electrosonic spray ionization. A gentle technique for generating folded proteins and protein complexes in the gas phase and for studying ion-molecule reactions at atmospheric pressureQ33431862
Microarray and proteomics analyses of human intestinal epithelial cells treated with the Aeromonas hydrophila cytotoxic enterotoxinQ33769036
Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing.Q33892877
Identification and characterization of mycobacterial proteins differentially expressed under standing and shaking culture conditions, including Rv2623 from a novel class of putative ATP-binding proteinsQ34009054
Identifying the proteome: software toolsQ34024346
Proteome analysis of secreted proteins of the gastric pathogen Helicobacter pyloriQ34126268
Search for potential vaccine candidate open reading frames in the Bacillus anthracis virulence plasmid pXO1: in silico and in vitro screeningQ34262140
Identification of a universal Group B streptococcus vaccine by multiple genome screenQ34313096
The microbial pan-genomeQ34453982
Bacterial outer membrane vesicles and the host-pathogen interactionQ34468123
Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteinsQ34473545
Fourier transform ion cyclotron resonance mass spectrometry: A primerQ34474791
Identification of small RNAs in diverse bacterial speciesQ34611996
Membrane proteins and membrane proteomicsQ34657071
Differential proteomic analysis of the Bacillus anthracis secretome: distinct plasmid and chromosome CO2-dependent cross talk mechanisms modulate extracellular proteolytic activitiesQ34696713
Search for Bacillus anthracis potential vaccine candidates by a functional genomic-serologic screenQ34721071
Discovery of virulence factors of pathogenic bacteriaQ34751980
A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer.Q34793861
Toward a genome-wide systems biology analysis of host-pathogen interactions in group A StreptococcusQ35094453
Autoimmunity and molecular mimicry in the pathogenesis of post streptococcal heart diseaseQ35109368
Protein and antibody microarray technology.Q35589787
Development of a vaccine against invasive pneumococcal disease based on combinations of virulence proteins of Streptococcus pneumoniae.Q35689099
Helicobacter pylori vaccine development based on combined subproteome analysisQ35892400
Identification of in vivo-expressed immunogenic proteins by serological proteome analysis of the Bacillus anthracis secretomeQ35913411
Uropathogenic Escherichia coli outer membrane antigens expressed during urinary tract infectionQ35949664
P433issue3
P921main subjectvaccine engineeringQ14861085
P304page(s)315-330
P577publication date2009-06-01
P13046publication type of scholarly workreview articleQ7318358
P1433published inExpert Review of ProteomicsQ15749465
P1476titleProteomic technology in the design of new effective antibacterial vaccines
P478volume6

Reverse relations

cites work (P2860)
Q37672379Genome-based approaches to vaccine development
Q36464016Proteomic contributions to our understanding of vaccine and immune responses
Q92451787Translating 'big data': better understanding of host-pathogen interactions to control bacterial foodborne pathogens in poultry
Q37752963Vaccines in veterinary medicine: a brief review of history and technology
Q27490454Vaccines: the Fourth Century

Search more.