| scholarly article | Q13442814 |
| P2093 | author name string | Benjamin Tycko | |
| P2860 | cites work | Genome-wide associations of gene expression variation in humans | Q21145274 |
| Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain | Q21563315 | ||
| Genome-scale DNA methylation maps of pluripotent and differentiated cells | Q24621431 | ||
| Common genetic variants account for differences in gene expression among ethnic groups | Q24626446 | ||
| Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome | Q28469213 | ||
| Mapping the genetic architecture of gene expression in human liver | Q28472693 | ||
| Genetics and beyond--the transcriptome of human monocytes and disease susceptibility | Q28752094 | ||
| Understanding mechanisms underlying human gene expression variation with RNA sequencing | Q29614412 | ||
| Transcriptome genetics using second generation sequencing in a Caucasian population | Q29614413 | ||
| Genetics of gene expression and its effect on disease | Q29614591 | ||
| Common regulatory variation impacts gene expression in a cell type-dependent manner | Q29614882 | ||
| Relative impact of nucleotide and copy number variation on gene expression phenotypes | Q29614883 | ||
| Microdroplet-based PCR enrichment for large-scale targeted sequencing | Q30481756 | ||
| Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression | Q33331563 | ||
| Extreme clonality in lymphoblastoid cell lines with implications for allele specific expression analyses | Q33359614 | ||
| Global patterns of cis variation in human cells revealed by high-density allelic expression analysis | Q39786256 | ||
| Genome-wide mapping of allele-specific protein-DNA interactions in human cells. | Q40001784 | ||
| Widespread monoallelic expression on human autosomes | Q40050793 | ||
| Gene body-specific methylation on the active X chromosome | Q40166744 | ||
| In vivo characterization of regulatory polymorphisms by allele-specific quantification of RNA polymerase loading | Q40665338 | ||
| Allele-specific DNA methylation in mouse strains is mainly determined by cis-acting sequences | Q41827630 | ||
| The core element of a CpG island protects avian sarcoma and leukosis virus-derived vectors from transcriptional silencing | Q41911711 | ||
| Sp1 elements protect a CpG island from de novo methylation | Q42497349 | ||
| Microdeletions in the human H19 DMR result in loss of IGF2 imprinting and Beckwith-Wiedemann syndrome | Q48177276 | ||
| Genome-wide association studies in cancer. | Q53316917 | ||
| Allelic imbalance in BRCA1 and BRCA2 gene expression is associated with an increased breast cancer risk. | Q54550455 | ||
| Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes | Q81305073 | ||
| Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation | Q81490137 | ||
| An Sp1/Sp3 binding polymorphism confers methylation protection. | Q33363087 | ||
| Influence of genetic background and tissue types on global DNA methylation patterns | Q33534659 | ||
| Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations | Q33549716 | ||
| Liver and adipose expression associated SNPs are enriched for association to type 2 diabetes | Q33576732 | ||
| Non-imprinted allele-specific DNA methylation on human autosomes. | Q33616901 | ||
| Allelic skewing of DNA methylation is widespread across the genome | Q33645884 | ||
| Mapping allele-specific DNA methylation: a new tool for maximizing information from GWAS. | Q33645971 | ||
| Genetic control of individual differences in gene-specific methylation in human brain. | Q33708612 | ||
| Integrating pathway analysis and genetics of gene expression for genome-wide association studies | Q33773021 | ||
| Allele-specific expression in the germline of patients with familial pancreatic cancer: an unbiased approach to cancer gene discovery | Q33924952 | ||
| Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome | Q33940916 | ||
| Extensive sequence-influenced DNA methylation polymorphism in the human genome | Q33946629 | ||
| Heritable individual-specific and allele-specific chromatin signatures in humans | Q34087197 | ||
| Variation in transcription factor binding among humans | Q34105133 | ||
| MeCP2 binds cooperatively to its substrate and competes with histone H1 for chromatin binding sites | Q34178049 | ||
| Digital PCR: a powerful new tool for noninvasive prenatal diagnosis? | Q34878255 | ||
| Localization of a long-range cis-regulatory element of IL13 by allelic transcript ratio mapping | Q35251290 | ||
| Gene-expression variation within and among human populations | Q35677775 | ||
| Allele-specific binding of CTCF to the multipartite imprinting control region KvDMR1 | Q35856728 | ||
| Cis-acting regulatory variation in the human genome | Q35925110 | ||
| Chromosome loops, insulators, and histone methylation: new insights into regulation of imprinting in clusters. | Q36238491 | ||
| Interactions between imprinting effects: summary and review | Q36436492 | ||
| Genetic variation in human gene expression | Q36510952 | ||
| Targeted screening of cis-regulatory variation in human haplotypes | Q37034616 | ||
| Epigenetic profiling at mouse imprinted gene clusters reveals novel epigenetic and genetic features at differentially methylated regions | Q37287372 | ||
| Autoimmune diseases: insights from genome-wide association studies | Q37292877 | ||
| Using gene expression to investigate the genetic basis of complex disorders | Q37292880 | ||
| Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human | Q37343820 | ||
| Direct determination of haplotypes from single DNA molecules | Q37433440 | ||
| Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing | Q37471777 | ||
| Imprinting and epigenetic changes in the early embryo | Q37598628 | ||
| The primary function of a redundant Sp1 binding site in the mouse aprt gene promoter is to block epigenetic gene inactivation | Q38331684 | ||
| General transcription factor binding at CpG islands in normal cells correlates with resistance to de novo DNA methylation in cancer cells | Q38346570 | ||
| Protein binding protects sites on stable episomes and in the chromosome from de novo methylation | Q39530432 | ||
| P433 | issue | R2 | |
| P921 | main subject | DNA methylation | Q874745 |
| P304 | page(s) | R210-20 | |
| P577 | publication date | 2010-09-20 | |
| P1433 | published in | Human Molecular Genetics | Q2720965 |
| P1476 | title | Allele-specific DNA methylation: beyond imprinting | |
| P478 | volume | 19 |
| Q92597250 | A Long Polymorphic GT Microsatellite within a Gene Promoter Mediates Non-Imprinted Allele-Specific DNA Methylation of a CpG Island in a Goldfish Inter-Strain Hybrid |
| Q36222522 | A genome-wide screen in human embryonic stem cells reveals novel sites of allele-specific histone modification associated with known disease loci |
| Q50799531 | A multi-tissue analysis identifies HLA complex group 9 gene methylation differences in bipolar disorder. |
| Q33991900 | A statistical framework for eQTL mapping using RNA-seq data |
| Q50465141 | A systematic study of single-nucleotide polymorphisms in the A4GALT gene suggests a molecular genetic basis for the P1/P2 blood groups. |
| Q58709600 | Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci |
| Q96640156 | Allele-specific expression is widespread in Bos indicus muscle and affects meat quality candidate genes |
| Q34994794 | An autosomal locus that controls chromosome-wide replication timing and mono-allelic expression |
| Q37248743 | Analyses of methylation status of CpG islands in promoters of miR-9 genes family in human gastric adenocarcinoma |
| Q36463179 | Analysis of a four generation family reveals the widespread sequence-dependent maintenance of allelic DNA methylation in somatic and germ cells |
| Q54263329 | Analysis of epigenetic modifications of DNA in human cells. |
| Q35932331 | Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome |
| Q37572837 | Beyond gene discovery in inflammatory bowel disease: the emerging role of epigenetics. |
| Q34333346 | Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data |
| Q34287662 | Cancer genetics and epigenetics: two sides of the same coin? |
| Q33895189 | Characterization of genome-methylome interactions in 22 nuclear pedigrees |
| Q34979379 | Comparative anatomy of chromosomal domains with imprinted and non-imprinted allele-specific DNA methylation |
| Q33906541 | CpG methylation regulates allelic expression of GDF5 by modulating binding of SP1 and SP3 repressor proteins to the osteoarthritis susceptibility SNP rs143383. |
| Q36623924 | DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases |
| Q35389349 | DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter |
| Q28731311 | DNA methylation patterns in cord blood DNA and body size in childhood |
| Q35018646 | Deep bisulfite sequencing of aberrantly methylated loci in a patient with multiple methylation defects |
| Q35913933 | Dysregulation of DGCR6 and DGCR6L: psychopathological outcomes in chromosome 22q11.2 deletion syndrome |
| Q52097446 | Early-life adversity-induced long-term epigenetic programming associated with early onset of chronic physical aggression: Studies in humans and animals. |
| Q37965878 | Epigenetic and genetic disturbance of the imprinted 11p15 region in Beckwith-Wiedemann and Silver-Russell syndromes. |
| Q37482526 | Epigenetic changes of CDX2 in gastric adenocarcinoma |
| Q34513596 | Epigenetic mechanisms and models in the origins of asthma |
| Q36456175 | Epigenetic mechanisms and the development of asthma |
| Q35821131 | Epigenetic regulation of differential HLA-A allelic expression levels |
| Q42255832 | Epigenetic silencing of monoallelically methylated miRNA loci in precancerous colorectal lesions |
| Q35910198 | Epigenetics in social insects: a new direction for understanding the evolution of castes |
| Q36173922 | Epigenetics of major psychosis: progress, problems and perspectives |
| Q28397508 | Epigenomics and allergic disease |
| Q26853673 | Epigenomics of idiopathic pulmonary fibrosis |
| Q36625981 | Epstein-Barr virus-induced epigenetic alterations following transient infection |
| Q45876312 | Female factor IX deficiency due to maternally inherited X-inactivation |
| Q37694056 | Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome |
| Q37693372 | GeMes, clusters of DNA methylation under genetic control, can inform genetic and epigenetic analysis of disease |
| Q34857132 | Gene-specific differential DNA methylation and chronic arsenic exposure in an epigenome-wide association study of adults in Bangladesh |
| Q41206753 | Genetic and epigenetic associations to obesity-related appetite phenotypes among African-American children |
| Q39610283 | Genetic and epigenetic methylation defects and implication of the ERMN gene in autism spectrum disorders. |
| Q26866363 | Genetic epidemiology and nonsyndromic structural birth defects: from candidate genes to epigenetics |
| Q52651693 | Genetic variants within the second intron of the KCNQ1 gene affect CTCF binding and confer a risk of Beckwith-Wiedemann syndrome upon maternal transmission. |
| Q33814873 | Genetic-epigenetic interactions in cis: a major focus in the post-GWAS era |
| Q90595517 | Genome-wide allele-specific methylation is enriched at gene regulatory regions in a multi-generation pedigree from the Norfolk Island isolate |
| Q42281559 | Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome. |
| Q33775428 | Haplotype-resolved genome sequencing of a Gujarati Indian individual. |
| Q30984376 | High-accuracy haplotype imputation using unphased genotype data as the references |
| Q28287122 | Identification of a PKP2 gene deletion in a family with arrhythmogenic right ventricular cardiomyopathy |
| Q33991953 | Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds |
| Q35256884 | Identification of regulatory SNPs associated with genetic modifications in lung adenocarcinoma. |
| Q36101881 | Increased epigenetic alterations at the promoters of transcriptional regulators following inadequate maternal gestational weight gain. |
| Q47157984 | Intrinsic MYH7 expression regulation contributes to tissue level allelic imbalance in hypertrophic cardiomyopathy |
| Q36891490 | Mechanisms and Disease Associations of Haplotype-Dependent Allele-Specific DNA Methylation |
| Q37655937 | Methylation of avpr1a in the cortex of wild prairie voles: effects of CpG position and polymorphism. |
| Q60309440 | Mother-child transmission of epigenetic information by tunable polymorphic imprinting |
| Q38759220 | Multigenerational cohorts in patients with asthma and allergy |
| Q36144491 | Mutual regulation between microRNA-373 and methyl-CpG-binding domain protein 2 in hilar cholangiocarcinoma |
| Q34052418 | Next-generation DNA sequencing-based assay for measuring allelic expression imbalance (AEI) of candidate neuropsychiatric disorder genes in human brain |
| Q46195221 | No association between genetic or epigenetic variation in insulin growth factors and antipsychotic-induced metabolic disturbances in a cross-sectional sample. |
| Q35954806 | Parent-of-origin effects on genome-wide DNA methylation in the Cape honey bee (Apis mellifera capensis) may be confounded by allele-specific methylation. |
| Q92914399 | Profiling allele-specific gene expression in brains from individuals with autism spectrum disorder reveals preferential minor allele usage |
| Q35144047 | Putting the 'epi' into epigenetics research in psychiatry |
| Q31106426 | References for Haplotype Imputation in the Big Data Era. |
| Q38100946 | Research progress in allele-specific expression and its regulatory mechanisms |
| Q38809006 | Review: DNA methylation and alcohol use disorders: Progress and challenges |
| Q30633727 | Screening for SNPs with Allele-Specific Methylation based on Next-Generation Sequencing Data |
| Q36411455 | Selected imprinting of INS in the marsupial |
| Q36800440 | Sequencing of isolated sperm cells for direct haplotyping of a human genome |
| Q47100672 | Single nucleotide polymorphisms and cancer susceptibility |
| Q33881906 | Statistical approaches for the analysis of DNA methylation microarray data |
| Q36397888 | Stress and glucocorticoid receptor transcriptional programming in time and space: Implications for the brain-gut axis |
| Q37699534 | Stress and the Emerging Roles of Chromatin Remodeling in Signal Integration and Stable Transmission of Reversible Phenotypes. |
| Q36376119 | TALENs-mediated gene disruption of FLT3 in leukemia cells: Using genome-editing approach for exploring the molecular basis of gene abnormality |
| Q36931989 | The human imprintome: regulatory mechanisms, methods of ascertainment, and roles in disease susceptibility |
| Q33565236 | The role of DNA methylation in common skeletal disorders |
| Q38617120 | The role of epigenetics in genetic and environmental epidemiology |
| Q36838971 | Tissue-specific patterns of allelically-skewed DNA methylation |
| Q39027010 | Trans-acting epigenetic effects of chromosomal aneuploidies: lessons from Down syndrome and mouse models |
| Q35088979 | Transient DNMT1 suppression reveals hidden heritable marks in the genome |
| Q47553897 | Two approaches reveal a new paradigm of 'switchable or genetics-influenced allele-specific DNA methylation' with potential in human disease. |
| Q35832781 | Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease. |
| Q37411672 | Understanding the epigenetic syntax for the genetic alphabet in the kidney |
| Q92583106 | Unique DNA Methylation Profiles Are Associated with cis-Variation in Honey Bees |
| Q34624774 | Whole-genome haplotyping approaches and genomic medicine |
| Q31164486 | epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data |
| Q34495526 | iASeq: integrative analysis of allele-specificity of protein-DNA interactions in multiple ChIP-seq datasets |
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