Rice proteomics: A move toward expanded proteome coverage to comparative and functional proteomics uncovers the mysteries of rice and plant biology

scientific article published on 04 April 2011

Rice proteomics: A move toward expanded proteome coverage to comparative and functional proteomics uncovers the mysteries of rice and plant biology is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1002/PMIC.201000696
P698PubMed publication ID21462347

P2093author name stringRandeep Rakwal
Ganesh Kumar Agrawal
P2860cites workSorghum genome sequencing by methylation filtrationQ21563632
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Messenger-RNA-binding proteins and the messages they carryQ29616012
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Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumesQ30484314
Matrix-assisted laser desorption/ionization time of flight mass spectrometry peptide mass fingerprints and post source decay: a tool for the identification and analysis of phloem proteins from Cucurbita maxima Duch. separated by two-dimensional polyQ30717771
Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis.Q45224778
Identification of extracellular matrix proteins of rice (Oryza sativa L.) involved in dehydration-responsive network: a proteomic approachQ45262193
A comparative proteomic analysis of rice seedlings under various high-temperature stresses.Q45918594
Application of rice nuclear proteome analysis to the identification of evolutionarily conserved and glucose-responsive nuclear proteins.Q45924019
Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications, and cleavage motifs.Q45993903
Understanding rice plant resistance to the Brown Planthopper (Nilaparvata lugens): a proteomic approach.Q46030908
Differential proteomic analysis of soluble extracellular proteins reveals the cysteine protease and cystatin involved in suspension-cultured cell proliferation in riceQ46177734
A comparative proteome approach to decipher the mechanism of rice adaptation to phosphorous deficiencyQ46216766
Proteomics of weakly bound cell wall proteins in rice calliQ46225431
Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresisQ46226431
Systematic secretome analyses of rice leaf and seed callus suspension-cultured cells: workflow development and establishment of high-density two-dimensional gel reference mapsQ46263114
Comparative proteomic study of arsenic-induced differentially expressed proteins in rice roots reveals glutathione plays a central role during As stressQ46408311
Analysis of embryonic proteome modulation by GA and ABA from germinating rice seedsQ46441089
In-depth investigation of the soybean seed-filling proteome and comparison with a parallel study of rapeseedQ46503133
Spermidine exodus and oxidation in the apoplast induced by abiotic stress is responsible for H2O2 signatures that direct tolerance responses in tobaccoQ46520514
Integrated transcriptomics, proteomics, and metabolomics analyses to survey ozone responses in the leaves of rice seedlingQ46563567
Proteomic analysis of phosphoproteins regulated by abscisic acid in rice leavesQ46603612
Solubilization of plant membrane proteins for analysis by two-dimensional gel electrophoresisQ46735688
Rice proteome database: a step toward functional analysis of the rice genomeQ46746182
The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activityQ46855038
Proteomics approach to identify dehydration responsive nuclear proteins from chickpea (Cicer arietinum L.).Q46962161
Proteomic analysis of cytoskeleton-associated RNA binding proteins in developing rice seedQ48068490
Decoding two-dimensional polyacrylamide gel electrophoresis complex maps by autocovariance function: a simplified approach useful for proteomicsQ48533315
The cytoplasmic-localized, cytoskeletal-associated RNA binding protein OsTudor-SN: evidence for an essential role in storage protein RNA transport and localization.Q50638693
Proteomic analysis of the secretome of rice calli.Q51813617
Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.Q51887741
Spot overlapping in two-dimensional polyacrylamide gel electrophoresis separations: a statistical study of complex protein maps.Q52046566
From 2-D electrophoresis to proteomics.Q52910626
Nano scale proteomics revealed the presence of regulatory proteins including three FT-Like proteins in phloem and xylem saps from rice.Q54540085
Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteinsQ56029136
The family 10 of plant pathogenesis-related proteins: Their structure, regulation, and function in response to biotic and abiotic stressesQ58329027
Quantitative proteomic analysis of CMS-related changes in Honglian CMS rice antherQ43276073
Identification of proteinaceous inhibitors of a cysteine proteinase (an Arg-specific gingipain) from Porphyromonas gingivalis in rice grain, using targeted-proteomics approachesQ43289760
Quantitative proteomics of seed filling in castor: comparison with soybean and rapeseed reveals differences between photosynthetic and nonphotosynthetic seed metabolismQ43292851
Identification of elicitor-responsive proteins in rice leaves by a proteomic approachQ43412330
Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneityQ43458089
Two-dimensional electrophoretic analysis of rice proteins by polyethylene glycol fractionation for protein arraysQ43682983
Extraction of plant proteins for two-dimensional electrophoresisQ43790653
Mass spectrometric identification of isoforms of PR proteins in xylem sap of fungus-infected tomato.Q44177272
Deciphering the proteomic profile of rice (Oryza sativa) bran: a pilot studyQ44462924
The effect of alpha-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination.Q44816982
Determining protein identity from sieve element sap in Ricinus communis L. by quadrupole time of flight (Q-TOF) mass spectrometryQ44924396
Analysis of arsenic stress-induced differentially expressed proteins in rice leaves by two-dimensional gel electrophoresis coupled with mass spectrometryQ30932762
Analysis of the Arabidopsis nuclear proteome and its response to cold stressQ33195015
Spot overlapping in two-dimensional maps: a serious problem ignored for much too longQ33214825
Towards the proteome of Brassica napus phloem sap.Q33231143
Proteomic analysis of seed filling in Brassica napus. Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresisQ33236834
Characterization of the maize xylem sap proteome.Q33239272
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thalianaQ33268608
An analysis of expressed sequence tags of developing castor endosperm using a full-length cDNA libraryQ33292915
Proteomic analysis of RNA-binding proteins in dry seeds of rice after fractionation by ssDNA affinity column chromatographyQ33310709
Removal of high-abundance proteins for nuclear subproteome studies in rice (Oryza sativa) endospermQ33315270
Proteomics analysis of rice lesion mimic mutant (spl1) reveals tightly localized probenazole-induced protein (PBZ1) in cells undergoing programmed cell deathQ33323639
Chilling stress-induced proteomic changes in rice rootsQ33330564
A proteomic and phosphoproteomic analysis of Oryza sativa plasma membrane and vacuolar membraneQ33344090
Mitochondrial proteome during salt stress-induced programmed cell death in riceQ33346739
Dynamic proteomic analysis reveals a switch between central carbon metabolism and alcoholic fermentation in rice filling grainsQ33364365
Glyphosate-induced oxidative stress in rice leaves revealed by proteomic approachQ33364658
Proteomic profiling of rice embryos from a hybrid rice cultivar and its parental linesQ33375434
Identification of drought-responsive genes in roots of upland rice (Oryza sativa L)Q33376864
Comparative analysis of young panicle proteome in thermo-sensitive genic male-sterile rice Zhu-1S under sterile and fertile conditionsQ33377075
Insight into the salt tolerance factors of a wild halophytic rice, Porteresia coarctata: a physiological and proteomic approachQ33398369
Proteomic identification of small, copper-responsive proteins in germinating embryos of Oryza sativaQ33406817
Secretome analysis of differentially induced proteins in rice suspension-cultured cells triggered by rice blast fungus and elicitorQ33413881
Developing rice embryo proteomics reveals essential role for embryonic proteins in regulation of seed germinationQ33453737
Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thalianaQ33559531
Template proteogenomics: sequencing whole proteins using an imperfect databaseQ33883042
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RNA-binding proteins in plants: the tip of an iceberg?Q34787041
A rice protein library: a data-file of rice proteins separated by two-dimensional electrophoresisQ35032179
Rice proteomics: current status and future perspectives.Q35574601
Applications of affinity chromatography in proteomicsQ35599747
System, trends and perspectives of proteomics in dicot plants Part I: Technologies in proteome establishmentQ36010654
System, trends and perspectives of proteomics in dicot plants Part II: Proteomes of the complex developmental stagesQ36010660
System, trends and perspectives of proteomics in dicot plants. Part III: Unraveling the proteomes influenced by the environment, and at the levels of function and genetic relationshipsQ36010665
Rice proteomics: a cornerstone for cereal food crop proteomesQ36163650
The Arabidopsis genome: a foundation for plant researchQ36336825
Gel-based proteomics approach for detecting low nitrogen-responsive proteins in cultivated rice speciesQ36549358
Rejuvenating rice proteomics: facts, challenges, and visions.Q36601051
Plant phosphoproteomics: a long road aheadQ36601074
Affinity chromatography: a useful tool in proteomics studiesQ36656966
Cloning and characterization of a probenazole-inducible gene for an intracellular pathogenesis-related protein in riceQ36809124
Comparative proteomics analysis reveals an intimate protein network provoked by hydrogen peroxide stress in rice seedling leavesQ36818118
Screening of rice genes from the cDNA catalog using the data obtained by protein sequencingQ36874725
Discovery and revision of Arabidopsis genes by proteogenomicsQ37020709
Affinity separation and enrichment methods in proteomic analysisQ37213417
Dehydration-responsive nuclear proteome of rice (Oryza sativa L.) illustrates protein network, novel regulators of cellular adaptation, and evolutionary perspectiveQ37258077
Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in riceQ37259007
Rice proteomics: ending phase I and the beginning of phase II.Q37391482
Plant phosphoproteomics: an updateQ37391486
Physiological and proteomic approaches to address heat tolerance during anthesis in rice (Oryza sativa L.).Q37468066
2-DE with IPGs.Q37481011
Hares and tortoises: the high- versus low-throughput proteomic raceQ37481016
Immobilized pH gradientsQ37515121
Membrane proteins and proteomics: love is possible, but so difficultQ37515143
Post-genomics studies of developmental processes in legume seedsQ37578922
Arabidopsis thaliana as a model organism in systems biologyQ37709150
New changes in the plasma-membrane-associated proteome of rice roots under salt stressQ38943195
Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.Q39045929
Differential regulation of proteins and phosphoproteins in rice under drought stressQ39125718
Proteomics of curcurbit phloem exudate reveals a network of defence proteins.Q39571695
Differential metabolic response of cultured rice (Oryza sativa) cells exposed to high- and low-temperature stressQ39855118
Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild riceQ41859959
Understanding the molecular basis of plant growth promotional effect of Pseudomonas fluorescens on rice through protein profilingQ42241832
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica riceQ42603925
Isolation and identification of cytoskeleton-associated prolamine mRNA binding proteins from developing rice seedsQ42652109
The impact of Arabidopsis on human health: diversifying our portfolioQ42776632
Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.Q43064151
Changes in protein expression profiles between a low phytic acid rice ( Oryza sativa L. Ssp. japonica) line and its parental line: a proteomic and bioinformatic approachQ43074810
Proteomic analysis of rice seedlings infected by Sinorhizobium meliloti 1021.Q43137563
Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expressionQ43179418
Abscisic acid pretreatment enhances salt tolerance of rice seedlings: proteomic evidenceQ43192328
Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmiumQ43255686
P433issue9
P921main subjectbotanyQ441
P304page(s)1630-1649
P577publication date2011-04-04
P1433published inProteomicsQ15614164
P1476titleRice proteomics: A move toward expanded proteome coverage to comparative and functional proteomics uncovers the mysteries of rice and plant biology
P478volume11

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