| P50 | author | Shoba Ranganathan | Q17489039 |
| | Aaron R Jex | Q59657009 |
| | Cinzia Cantacessi | Q37375310 |
| | Robin B. Gasser | Q42326677 |
| | Neil D. Young | Q30518653 |
| P2093 | author name string | B E Campbell | |
| | R S Hall | |
| P2860 | cites work | Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes | Q21267230 |
| | The DNA sequence and biological annotation of human chromosome | Q21735919 |
| | Gene ontology: tool for the unification of biology | Q23781406 |
| | Rescuing the bottom billion through control of neglected tropical diseases | Q24290723 |
| | Hierarchical docking of databases of multiple ligand conformations | Q24538548 |
| | DNA Data Bank of Japan (DDBJ) for genome scale research in life science | Q24548418 |
| | The EMBL Nucleotide Sequence Database | Q24548433 |
| | An Eulerian path approach to DNA fragment assembly | Q24555762 |
| | RNA-Seq: a revolutionary tool for transcriptomics | Q24596169 |
| | Genetic and physical maps of Saccharomyces cerevisiae | Q24599455 |
| | Epidemiology and control of human gastrointestinal parasites in children | Q24601973 |
| | Accurate whole human genome sequencing using reversible terminator chemistry | Q24641887 |
| | WormBase: a comprehensive resource for nematode research | Q24642944 |
| | The Pfam protein families database | Q24644670 |
| | InterPro: the integrative protein signature database | Q24655685 |
| | BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009 | Q24655817 |
| | Velvet: algorithms for de novo short read assembly using de Bruijn graphs | Q24657623 |
| | Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server | Q24684376 |
| | Hookworm aspartic protease, Na-APR-2, cleaves human hemoglobin and serum proteins in a host-specific fashion | Q42693655 |
| | Inhibition of GGTase-I and FTase disrupts cytoskeletal organization of human PC-3 prostate cancer cells | Q43072073 |
| | Collagen processing and cuticle formation is catalysed by the astacin metalloprotease DPY-31 in free-living and parasitic nematodes | Q43420386 |
| | The first two cantharidin analogues displaying PP1 selectivity | Q43868992 |
| | Two hypotheses to explain why RNA interference does not work in animal parasitic nematodes | Q44309125 |
| | Metalloendopeptidases from the intestinal brush border of Haemonchus contortus as protective antigens for sheep | Q44594907 |
| | Gene expression profiles associated with the transition to parasitism in Ancylostoma caninum larvae. | Q44862785 |
| | RNA interference targeting cathepsin L and Z-like cysteine proteases of Onchocerca volvulus confirmed their essential function during L3 molting | Q45157453 |
| | Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform. | Q46372338 |
| | Proteomics analysis of the excretory/secretory component of the blood-feeding stage of the hookworm, Ancylostoma caninum | Q46407310 |
| | Serpin expression in the parasitic stages of Trichostrongylus vitrinus, an ovine intestinal nematode | Q46408773 |
| | Isolation and functional analysis of mitochondria from the nematode Caenorhabditis elegans | Q46722469 |
| | High-performance signal peptide prediction based on sequence alignment techniques | Q47402726 |
| | Considerations to improve functional annotations in biological databases | Q47622426 |
| | Use of RNA interference to investigate gene function in the human filarial nematode parasite Brugia malayi | Q47845860 |
| | A broad spectrum Kunitz type serine protease inhibitor secreted by the hookworm Ancylostoma ceylanicum. | Q47846060 |
| | X-ray structure of Na-ASP-2, a pathogenesis-related-1 protein from the nematode parasite, Necator americanus, and a vaccine antigen for human hookworm infection | Q48150544 |
| | A developmentally regulated cysteine protease gene family in Haemonchus contortus | Q48246657 |
| | Discovery of veterinary antiparasitic agents in the 21st century: a view from industry | Q48824908 |
| | Efficacy and specificity of RNA interference in larval life-stages of Ostertagia ostertagi | Q49078242 |
| | Mining the Leishmania genome for novel antigens and vaccine candidates. | Q51830208 |
| | Assembling millions of short DNA sequences using SSAKE. | Q51926970 |
| | RNA interference in parasitic nematodes of animals: a reality check? | Q51995373 |
| | A combined bioinformatics and chemoinformatics approach for the development of new antiparasitic drugs. | Q52673753 |
| | Development of methods for RNA interference in the sheep gastrointestinal parasite, Trichostrongylus colubriformis. | Q54482282 |
| | RNA interference in Haemonchus contortus: suppression of beta-tubulin gene expression in L3, L4 and adult worms in vitro. | Q54633809 |
| | Prediction of Transmembrane Topology and Signal Peptide Given a Protein’s Amino Acid Sequence | Q57909982 |
| | Heterocyclic substituted cantharidin and norcantharidin analogues—synthesis, protein phosphatase (1 and 2A) inhibition, and anti-cancer activity | Q58200454 |
| | Synthesis and biological evaluation of norcantharidin analogues: Towards PP1 selectivity | Q58200463 |
| | SPD--a web-based secreted protein database | Q24796109 |
| | Investigating hookworm genomes by comparative analysis of two Ancylostoma species | Q24803534 |
| | OrfPredictor: predicting protein-coding regions in EST-derived sequences | Q24812401 |
| | SPdb--a signal peptide database. | Q24812642 |
| | WormBase: better software, richer content | Q25257908 |
| | Basic local alignment search tool | Q25938991 |
| | Analysis of regulatory protease sequences identified through bioinformatic data mining of the Schistosoma mansoni genome | Q27496583 |
| | Improved prediction of signal peptides: SignalP 3.0 | Q27860548 |
| | Sequencing technologies - the next generation | Q27860568 |
| | Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes | Q27860838 |
| | CAP3: A DNA sequence assembly program | Q27860964 |
| | The Pfam protein families database. | Q27861012 |
| | The mystery of nonclassical protein secretion. A current view on cargo proteins and potential export routes | Q28204640 |
| | Soil-transmitted helminth infections: ascariasis, trichuriasis, and hookworm | Q28238731 |
| | SOAP: short oligonucleotide alignment program | Q28266228 |
| | The impact of next-generation sequencing technology on genetics | Q28268088 |
| | Next-generation DNA sequencing methods | Q28285066 |
| | The PROSITE database, its status in 1999 | Q28291019 |
| | Transcriptional changes in the hookworm, Ancylostoma caninum, during the transition from a free-living to a parasitic larva | Q28472116 |
| | Genomic-bioinformatic analysis of transcripts enriched in the third-stage larva of the parasitic nematode Ascaris suum | Q28472910 |
| | Needles in the EST haystack: large-scale identification and analysis of excretory-secretory (ES) proteins in parasitic nematodes using expressed sequence tags (ESTs) | Q28473708 |
| | Massively parallel sequencing and analysis of the Necator americanus transcriptome | Q28473882 |
| | Computational prediction and experimental assessment of secreted/surface proteins from Mycobacterium tuberculosis H37Rv | Q28474670 |
| | Functional analysis of the cathepsin-like cysteine protease genes in adult Brugia malayi using RNA interference | Q28474713 |
| | A comparative chemogenomics strategy to predict potential drug targets in the metazoan pathogen, Schistosoma mansoni | Q28474728 |
| | The key role of genomics in modern vaccine and drug design for emerging infectious diseases | Q28476274 |
| | Archiving next generation sequencing data | Q28749233 |
| | ABySS: a parallel assembler for short read sequence data | Q29547263 |
| | The druggable genome | Q29547361 |
| | Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research | Q29547461 |
| | A combined transmembrane topology and signal peptide prediction method | Q29615817 |
| | Soil-transmitted helminth infections: updating the global picture | Q29619026 |
| | Applications of next-generation sequencing technologies in functional genomics | Q29619225 |
| | FlyBase: enhancing Drosophila Gene Ontology annotations | Q29619306 |
| | Identification of novel chondroitin proteoglycans in Caenorhabditis elegans: embryonic cell division depends on CPG-1 and CPG-2 | Q30480412 |
| | WormBase: new content and better access | Q34581089 |
| | RNA interference in parasitic helminths: current situation, potential pitfalls and future prospects | Q34597487 |
| | Free resources to assist structure-based virtual ligand screening experiments | Q34662757 |
| | Transgenesis in parasitic nematodes: building a better array | Q34732349 |
| | Single-molecule DNA sequencing of a viral genome | Q34767716 |
| | Randomized, placebo-controlled, double-blind trial of the Na-ASP-2 hookworm vaccine in unexposed adults | Q34768601 |
| | KOBAS server: a web-based platform for automated annotation and pathway identification | Q34974449 |
| | Helminth vaccines: from mining genomic information for vaccine targets to systems used for protein expression | Q35143303 |
| | Genomics and its impact on parasitology and the potential for development of new parasite control methods. | Q35195166 |
| | Digestive proteases of blood-feeding nematodes. | Q35212643 |
| | Identification and characterisation of an aspartyl protease inhibitor homologue as a major allergen of Trichostrongylus colubriformis. | Q35295215 |
| | Modulation of host immune responses by nematode cystatins | Q35295296 |
| | Genomic filtering: an approach to discovering novel antiparasitics | Q35885277 |
| | ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform | Q35914279 |
| | Strategies for the design of potent and selective kinase inhibitors. | Q36126762 |
| | Unconventional secretory routes: direct protein export across the plasma membrane of mammalian cells | Q36184194 |
| | Progresses in the field of drug design to combat tropical protozoan parasitic diseases | Q36395593 |
| | The canine hookworm genome: analysis and classification of Ancylostoma caninum survey sequences | Q36491789 |
| | Prospects for exploring molecular developmental processes in Haemonchus contortus. | Q36499366 |
| | De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer | Q36586588 |
| | Hookworm vaccines: past, present, and future | Q36635886 |
| | Vaccines against blood-feeding nematodes of humans and livestock | Q36726742 |
| | Integrating transcriptome, proteome and glycome analyses of Schistosoma biology | Q36750479 |
| | Oesophagostomum dentatum: potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects | Q36756560 |
| | Post-translational modifications and regulation of the RAS superfamily of GTPases as anticancer targets | Q36856455 |
| | CED-10/Rac1 mediates axon guidance by regulating the asymmetric distribution of MIG-10/lamellipodin. | Q37242270 |
| | An enzymatically inactivated hemoglobinase from Necator americanus induces neutralizing antibodies against multiple hookworm species and protects dogs against heterologous hookworm infection | Q37326963 |
| | Sequence assembly. | Q37372054 |
| | A portrait of the "SCP/TAPS" proteins of eukaryotes--developing a framework for fundamental research and biotechnological outcomes. | Q37400340 |
| | Elucidating ANTs in worms using genomic and bioinformatic tools--biotechnological prospects? | Q37601057 |
| | Lost in the space of bioinformatic tools: a constantly updated survival guide for genetic epidemiology. The GenEpi Toolbox | Q37645064 |
| | Blunting the knife: development of vaccines targeting digestive proteases of blood-feeding helminth parasites | Q37756146 |
| | Our wormy world genomics, proteomics and transcriptomics in East and southeast Asia. | Q37772267 |
| | Serine/threonine phosphatases in socioeconomically important parasitic nematodes—Prospects as novel drug targets? | Q37781877 |
| | Atypical (RIO) protein kinases from Haemonchus contortus--promise as new targets for nematocidal drugs | Q37832015 |
| | Exploring transcriptional conservation between Ancylostoma caninum and Haemonchus contortus by oligonucleotide microarray and bioinformatic analyses | Q38359451 |
| | The Mouse Genome Database (MGD): mouse biology and model systems | Q38393159 |
| | SecretP: a new method for predicting mammalian secreted proteins | Q39913057 |
| | Farnesyltransferase inhibitors: Ras research yields a potential cancer therapeutic | Q40745426 |
| | PCAP: a whole-genome assembly program | Q40830110 |
| | The potential of farnesyltransferase inhibitors as cancer chemotherapeutics | Q41455731 |
| | Proteolytic degradation of hemoglobin in the intestine of the human hookworm Necator americanus | Q42162237 |
| | Crystallization and preliminary X-ray analysis of Na-ASP-1, a multi-domain pathogenesis-related-1 protein from the human hookworm parasite Necator americanus | Q42411728 |
| | The evaluation of recombinant hookworm antigens as vaccines in hamsters (Mesocricetus auratus) challenged with human hookworm, Necator americanus | Q42626863 |
| | First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach | Q30540149 |
| | A multi-enzyme cascade of hemoglobin proteolysis in the intestine of blood-feeding hookworms | Q30763295 |
| | Molecular cloning and characterization of gut-derived cysteine proteinases associated with a host protective extract from Haemonchus contortus | Q30821319 |
| | A comprehensive assessment of N-terminal signal peptides prediction methods | Q30951432 |
| | Protection studies in sheep using affinity-purified and recombinant cysteine proteinases of adult Haemonchus contortus | Q31119735 |
| | Molecular characterisation of a male-specific serine/threonine phosphatase from Oesophagostomum dentatum (Nematoda: Strongylida), and functional analysis of homologues in Caenorhabditis elegans | Q31137061 |
| | Molecular characterisation of the Ancylostoma-secreted protein family from the adult stage of Ancylostoma caninum | Q31152995 |
| | In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches | Q33322197 |
| | A family of cathepsin B cysteine proteases expressed in the gut of the human hookworm, Necator americanus | Q33337600 |
| | CleanEST: a database of cleansed EST libraries | Q33373612 |
| | Antimalarial drug discovery: in silico structural biology and rational drug design. | Q33466461 |
| | SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read | Q33525367 |
| | Mechanism-based screening: discovery of the next generation of anthelmintics depends upon more basic research | Q33537035 |
| | Assembly algorithms for next-generation sequencing data | Q33538377 |
| | Differences in transcription between free-living and CO2-activated third-stage larvae of Haemonchus contortus | Q33565038 |
| | Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation | Q33578293 |
| | RNA-seq: from technology to biology | Q33604404 |
| | A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing | Q33648646 |
| | Ascaris suum: RNAi mediated silencing of enolase gene expression in infective larvae | Q33651918 |
| | Structural and functional characterisation of the fork head transcription factor-encoding gene, Hc-daf-16, from the parasitic nematode Haemonchus contortus (Strongylida) | Q33786575 |
| | PRINTS-S: the database formerly known as PRINTS. | Q33883200 |
| | Immune evasion genes from filarial nematodes | Q34282175 |
| | Toward simplifying and accurately formulating fragment assembly | Q34290064 |
| | A new algorithm for DNA sequence assembly | Q34290071 |
| | Vaccination of dogs with a recombinant cysteine protease from the intestine of canine hookworms diminishes the fecundity and growth of worms | Q34318119 |
| | Testing the efficacy of RNA interference in Haemonchus contortus. | Q34493166 |
| | A hitchhiker's guide to expressed sequence tag (EST) analysis | Q34537805 |
| P433 | issue | 5 | |
| P921 | main subject | parasitology | Q180502 |
| | bioinformatics | Q128570 |
| P304 | page(s) | 265-275 | |
| P577 | publication date | 2012-05-01 | |
| P1433 | published in | Parasite Immunology | Q15751559 |
| P1476 | title | Bioinformatics meets parasitology | |
| P478 | volume | 34 | |