Zebrafish kidney development: Basic science to translational research

scientific article published on June 1, 2011

Zebrafish kidney development: Basic science to translational research is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/BDRC.20209
P8608Fatcat IDrelease_jbyx46vx6rbrlp6yzfh6muyanm
P953full work available online athttps://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002%2Fbdrc.20209
https://doi.org/10.1002/bdrc.20209
https://europepmc.org/articles/PMC3694221
https://europepmc.org/articles/pmc3694221?pdf=render
https://europepmc.org/articles/PMC3694221?pdf=render
https://onlinelibrary.wiley.com/doi/full/10.1002/bdrc.20209
P932PMC publication ID3694221
P698PubMed publication ID21671354

P2093author name stringChiara Cianciolo Cosentino
Mark de Caestecker
Alan J. Davidson
Neil A. Hukriede
Cuong Q. Diep
Lisa M. Swanhart
P2860cites workJoubert Syndrome and related disordersQ21202880
Mutations in the cilia gene ARL13B lead to the classical form of Joubert syndromeQ21710711
The Ciliopathies: An Emerging Class of Human Genetic DisordersQ22337032
Dissection of epistasis in oligogenic Bardet-Biedl syndromeQ24297989
Bardet-Biedl syndrome genes are important in retrograde intracellular trafficking and Kupffer's vesicle cilia functionQ24300539
A common allele in RPGRIP1L is a modifier of retinal degeneration in ciliopathiesQ24309499
Nephrocystin-3 is required for ciliary function in zebrafish embryosQ24312027
Requirement for Lim1 in head-organizer functionQ24312737
LRRC50, a conserved ciliary protein implicated in polycystic kidney diseaseQ24316336
The centrosomal protein nephrocystin-6 is mutated in Joubert syndrome and activates transcription factor ATF4Q24336477
Genetic complexity in Joubert syndrome and related disordersQ37018625
The zebrafish pronephros: a model to study nephron segmentationQ37103127
Mechanistic insights into Bardet-Biedl syndrome, a model ciliopathyQ37111349
Assembly of primary ciliaQ37130367
Building it up and taking it down: the regulation of vertebrate ciliogenesisQ37147143
Long-term outcomes of acute kidney injuryQ37195417
Possible mechanisms of kidney repairQ37265077
Small molecule developmental screens reveal the logic and timing of vertebrate developmentQ37276174
Therapeutic and predictive targets of AKI.Q37339377
Inhibition of histone deacetylase activity attenuates renal fibroblast activation and interstitial fibrosis in obstructive nephropathy.Q37417291
Toward the identification of a "renopoietic system"?Q37594012
Ciliary biology: understanding the cellular and genetic basis of human ciliopathiesQ37624568
Kidney regenerationQ37728655
1001 model organisms to study cilia and flagellaQ37833124
Uncharted waters: nephrogenesis and renal regeneration in fish and mammalsQ37845213
Pathophysiology of ischemic acute kidney injuryQ37848648
Developmental defects in a zebrafish model for muscular dystrophies associated with the loss of fukutin-related protein (FKRP).Q38291016
The nephrogenic potential of the transcription factors osr1, osr2, hnf1b, lhx1 and pax8 assessed in Xenopus animal capsQ24338778
Homozygosity mapping with SNP arrays identifies TRIM32, an E3 ubiquitin ligase, as a Bardet-Biedl syndrome gene (BBS11)Q24546392
The histone methyltransferase SETDB1 is recurrently amplified in melanoma and accelerates its onsetQ24625220
Mutations in TMEM216 perturb ciliogenesis and cause Joubert, Meckel and related syndromesQ24625476
The many roles of histone deacetylases in development and physiology: implications for disease and therapyQ24628821
DHODH modulates transcriptional elongation in the neural crest and melanomaQ24629043
The primary cilium as a cellular signaling center: lessons from diseaseQ24632942
CC2D2A is mutated in Joubert syndrome and interacts with the ciliopathy-associated basal body protein CEP290Q24644138
Mesenchymal-epithelial transition in epithelial response to injury: the role of Foxc2Q24645523
Autosomal dominant polycystic kidney disease: the last 3 yearsQ24656249
Identification of a novel BBS gene (BBS12) highlights the major role of a vertebrate-specific branch of chaperonin-related proteins in Bardet-Biedl syndromeQ24680972
Jagged2a-notch signaling mediates cell fate choice in the zebrafish pronephric ductQ27315061
The nonmotile ciliopathiesQ27967648
Genetic and physical interaction between the NPHP5 and NPHP6 gene productsQ28118065
Mutations in INVS encoding inversin cause nephronophthisis type 2, linking renal cystic disease to the function of primary cilia and left-right axis determinationQ28188363
Large scale genetics in a small vertebrate, the zebrafishQ28286020
Identification of a novel retinoid by small molecule screening with zebrafish embryosQ28472496
Genetic analysis of fin development in zebrafish identifies furin and hemicentin1 as potential novel fraser syndrome disease genesQ28473672
Inversin, a novel gene in the vertebrate left-right axis pathway, is partially deleted in the inv mouseQ28504917
Disruption of Bardet-Biedl syndrome ciliary proteins perturbs planar cell polarity in vertebratesQ28506652
The ion channel polycystin-2 is required for left-right axis determination in miceQ28508558
Cardiac defects and renal failure in mice with targeted mutations in Pkd2Q28510555
Expression and Function of the Developmental Gene Wnt-4 during Experimental Acute Renal Failure in RatsQ28583998
Nephric lineage specification by Pax2 and Pax8Q28585002
Chlamydomonas IFT88 and its mouse homologue, polycystic kidney disease gene tg737, are required for assembly of cilia and flagellaQ28593253
The primary cilium: a signalling centre during vertebrate developmentQ29547197
Inversin, the gene product mutated in nephronophthisis type II, functions as a molecular switch between Wnt signaling pathwaysQ29614619
Cilia-driven fluid flow in the zebrafish pronephros, brain and Kupffer's vesicle is required for normal organogenesisQ29614824
Hypomorphic mutations in syndromic encephalocele genes are associated with Bardet-Biedl syndromeQ29615746
Disruption of the basal body compromises proteasomal function and perturbs intracellular Wnt responseQ29617051
Dorsomorphin inhibits BMP signals required for embryogenesis and iron metabolismQ29617479
Heart regeneration in zebrafishQ29619776
Shaping the vertebrate body plan by polarized embryonic cell movementsQ30310311
A two-step mechanism underlies the planar polarization of regenerating sensory hair cellsQ30445500
Neomycin-induced hair cell death and rapid regeneration in the lateral line of zebrafish (Danio rerio).Q30473445
Identification of an N-terminal glycogen synthase kinase 3 phosphorylation site which regulates the functional localization of polycystin-2 in vivo and in vitroQ38510714
Restoration of renal function in zebrafish models of ciliopathiesQ39852315
Complex I deficiency and dopaminergic neuronal cell loss in parkin-deficient zebrafish (Danio rerio).Q39979942
The ADPKD genes pkd1a/b and pkd2 regulate extracellular matrix formationQ40236123
Antiangiogenic and vascular-targeting activity of the microtubule-destabilizing trans-resveratrol derivative 3,5,4'-trimethoxystilbene.Q40460041
Novel targets for Huntington's disease in an mTOR-independent autophagy pathwayQ41978909
Intraflagellar transport proteins are essential for cilia formation and for planar cell polarityQ41987991
Inhibition of histone deacetylase activates side population cells in kidney and partially reverses chronic renal injuryQ42516153
Cilia localization is essential for in vivo functions of the Joubert syndrome protein Arl13b/ScorpionQ42644808
A chemical genetic screen for cell cycle inhibitors in zebrafish embryosQ42833689
Dissection of angiogenic signaling in zebrafish using a chemical genetic approachQ44043150
Nephrogenesis is induced by partial nephrectomy in the elasmobranch Leucoraja erinaceaQ44449832
Targeted expression of human MYCN selectively causes pancreatic neuroendocrine tumors in transgenic zebrafishQ44818803
Acute renal failure in zebrafish: a novel system to study a complex diseaseQ45206207
BRAF mutations are sufficient to promote nevi formation and cooperate with p53 in the genesis of melanoma.Q45252786
Ischemic acute renal failure induces the expression of a wide range of nephrogenic proteins.Q46801058
Proliferation capacity of the renal proximal tubule involves the bulk of differentiated epithelial cellsQ46968809
Zebrafish curly up encodes a Pkd2 ortholog that restricts left-side-specific expression of southpawQ47073152
Notch signaling controls the differentiation of transporting epithelia and multiciliated cells in the zebrafish pronephrosQ47073212
Characterization of three novel members of the zebrafish Pax2/5/8 family: dependency of Pax5 and Pax8 expression on the Pax2.1 (noi) functionQ47073232
A defect in a novel Nek-family kinase causes cystic kidney disease in the mouse and in zebrafishQ47073857
Polaris and Polycystin-2 in dorsal forerunner cells and Kupffer's vesicle are required for specification of the zebrafish left-right axisQ47073937
Chemical suppression of a genetic mutation in a zebrafish model of aortic coarctationQ47074041
A genetic screen in zebrafish identifies cilia genes as a principal cause of cystic kidneyQ47074132
Cloning of inv, a gene that controls left/right asymmetry and kidney development.Q48021550
Myc-induced T cell leukemia in transgenic zebrafishQ48392721
Expression and function of the Delta-1/Notch-2/Hes-1 pathway during experimental acute kidney injuryQ50336844
Light-induced rod and cone cell death and regeneration in the adult albino zebrafish (Danio rerio) retinaQ50510016
High-throughput assay for small molecules that modulate zebrafish embryonic heart rateQ50743158
Kidney regeneration through nephron neogenesis in medakaQ51829677
Cell mosaic patterns in the native and regenerated inner retina of zebrafish: implications for retinal assemblyQ52172323
Early development of the zebrafish pronephros and analysis of mutations affecting pronephric functionQ52182505
A genetic screen for mutations affecting embryogenesis in zebrafish.Q52198575
Proximal tubular epithelial cells are generated by division of differentiated cells in the healthy kidneyQ53598069
Primary cilia and signaling pathways in mammalian development, health and disease.Q55443025
Production of clones of homozygous diploid zebra fish (Brachydanio rerio)Q59071966
Renal cilia display length alterations following tubular injury and are present early in epithelial repairQ62393733
Development of newly formed nephrons in the goldfish kidney following hexachlorobutadiene-induced nephrotoxicityQ68837244
Infantile chronic tubulo-interstitial nephritis with cortical microcysts: variant of nephronophthisis or new disease entity?Q69578688
Development of New Nephrons in Adult Kidneys Following Gentamicin-Induced NephrotoxicityQ71982666
A zebrafish retinoic acid receptor expressed in the regenerating caudal finQ72714708
Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesodermQ73556382
Somatic Inactivation of Pkd2 Results in Polycystic Kidney DiseaseQ74502174
High-throughput screening in academia: the Harvard experienceQ75230087
Patterning of the avian intermediate mesoderm by lateral plate and axial tissuesQ78684881
Transgenic zebrafish as a novel animal model to study tauopathies and other neurodegenerative disorders in vivoQ82984434
A genetic screen for mutations affecting embryogenesis in zebrafishQ112778173
Differential induction of four msx homeobox genes during fin development and regeneration in zebrafishQ112778199
Cancer genetics and drug discovery in the zebrafishQ35166822
Making a zebrafish kidney: a tale of two tubesQ35167520
Chemical discovery and global gene expression analysis in zebrafishQ35190124
Identification of adult nephron progenitors capable of kidney regeneration in zebrafishQ35207965
A mutation in separase causes genome instability and increased susceptibility to epithelial cancerQ35565319
A role for chemistry in stem cell biologyQ35824092
Generation of a transgenic zebrafish model of Tauopathy using a novel promoter element derived from the zebrafish eno2 geneQ36173031
Regrow or repair: potential regenerative therapies for the kidneyQ36548118
Adult stem cells in the repair of the injured renal tubuleQ36577069
The changing epidemiology of acute renal failureQ36577185
Molecular insights into segmentation along the proximal-distal axis of the nephron.Q36643537
Embryonic expression of Lim-1, the mouse homolog of Xenopus Xlim-1, suggests a role in lateral mesoderm differentiation and neurogenesisQ36721320
Epigenetic regulation of BMP7 in the regenerative response to ischemiaQ36736738
The subcellular localization of TRPP2 modulates its functionQ36736756
Role of primary cilia in the pathogenesis of polycystic kidney diseaseQ36788907
lim6, a novel LIM homeobox gene in the zebrafish: Comparison of its expression pattern withlim1Q36877483
Polycystin-2 immunolocalization and function in zebrafishQ36973881
Chemical modulation of receptor signaling inhibits regenerative angiogenesis in adult zebrafishQ30477768
Generation of FGF reporter transgenic zebrafish and their utility in chemical screens.Q30479704
Zebrafish mutations affecting cilia motility share similar cystic phenotypes and suggest a mechanism of cyst formation that differs from pkd2 morphants.Q30482657
A zebrafish model for Waardenburg syndrome type IV reveals diverse roles for Sox10 in the otic vesicleQ30485384
Convergent extension movements and ciliary function are mediated by ofd1, a zebrafish orthologue of the human oral-facial-digital type 1 syndrome geneQ30485917
Characterization of mesonephric development and regeneration using transgenic zebrafishQ30497359
Intrarenal cells, not bone marrow-derived cells, are the major source for regeneration in postischemic kidneyQ33218591
The cdx genes and retinoic acid control the positioning and segmentation of the zebrafish pronephrosQ33303450
Automated, quantitative screening assay for antiangiogenic compounds using transgenic zebrafishQ33308472
Zebrafish chemical screening reveals an inhibitor of Dusp6 that expands cardiac cell lineagesQ33478364
Chemical modifier screen identifies HDAC inhibitors as suppressors of PKD modelsQ33564416
Nephronophthisis: disease mechanisms of a ciliopathyQ33594278
Zebrafish heart regeneration occurs by cardiomyocyte dedifferentiation and proliferationQ33757338
Automated image-based phenotypic analysis in zebrafish embryosQ33818305
Inhibition of histone deacetylase expands the renal progenitor cell populationQ33834281
Kidney morphogenesis: cellular and molecular regulationQ33855366
Restoration of tubular epithelial cells during repair of the postischemic kidney occurs independently of bone marrow-derived stem cellsQ33865856
A large-scale insertional mutagenesis screen in zebrafishQ33878395
Functional analyses of variants reveal a significant role for dominant negative and common alleles in oligogenic Bardet-Biedl syndromeQ33934745
Frequency of gamma-Ray Induced Specific Locus and Recessive Lethal Mutations in Mature Germ Cells of the Zebrafish, BRACHYDANIO RERIO.Q33949041
Induction of Mutations by gamma-Rays in Pregonial Germ Cells of Zebrafish EmbryosQ33949046
Genetic interaction between Bardet-Biedl syndrome genes and implications for limb patterningQ33979104
Localization of proliferating cell nuclear antigen, vimentin, c-Fos, and clusterin in the postischemic kidney. Evidence for a heterogenous genetic response among nephron segments, and a large pool of mitotically active and dedifferentiated cells.Q34146136
The cell biology of polycystic kidney diseaseQ34149966
Differential induction of four msx homeobox genes during fin development and regeneration in zebrafishQ34311992
Kidney development and disease in the zebrafishQ34383970
A fish model of renal regeneration and developmentQ34388142
Primary contribution to zebrafish heart regeneration by gata4(+) cardiomyocytes.Q34618217
Nephronophthisis-associated ciliopathiesQ34629900
Intrinsic epithelial cells repair the kidney after injuryQ34765013
The pronephros.Q34919565
Dedifferentiation and proliferation of surviving epithelial cells in acute renal failureQ35133244
Intravenous Microinjections of Zebrafish Larvae to Study Acute Kidney InjuryQ35164175
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectanimal modelQ264024
Danio rerioQ169444
P304page(s)141-156
P577publication date2011-06-01
P13046publication type of scholarly workreview articleQ7318358
P1433published inBirth Defects Research Part C: Embryo Today ReviewsQ15757886
P1476titleZebrafish kidney development: basic science to translational research
Zebrafish kidney development: Basic science to translational research
P478volume93

Reverse relations

cites work (P2860)
Q48126211A nonsense mutation in CEP55 defines a new locus for a Meckel-like syndrome, an autosomal recessive lethal fetal ciliopathy.
Q35694396Analysis of nephron composition and function in the adult zebrafish kidney
Q36580550Apical Targeting and Endocytosis of the Sialomucin Endolyn are Essential for Establishment of Zebrafish Pronephric Kidney Function
Q84565605Assessing cardio‐renal function in zebrafish larvae
Q35673700Atlas of Cellular Dynamics during Zebrafish Adult Kidney Regeneration
Q34564022Centrosomes in the zebrafish (Danio rerio): a review including the related basal body
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Q36780455Current insights into renal ciliopathies: what can genetics teach us?
Q36810715Delayed treatment with PTBA analogs reduces postinjury renal fibrosis after kidney injury
Q52607044Drug Discovery to Halt the Progression of Acute Kidney Injury to Chronic Kidney Disease: A Case for Phenotypic Drug Discovery in Acute Kidney Injury
Q99584589Exploring Key Challenges of Understanding the Pathogenesis of Kidney Disease in Bardet-Biedl Syndrome
Q34155624Fish is Fish: the use of experimental model species to reveal causes of skeletal diversity in evolution and disease
Q98937067Fishing for protective compounds
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Q36068284Hooked! Modeling human disease in zebrafish
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Q28312156Making a Tubule the Noncanonical Way
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Q28067647Renal progenitors: Roles in kidney disease and regeneration
Q33635081Roles of Iroquois Transcription Factors in Kidney Development.
Q42778078The transcriptional response of skin to fluorescent light exposure in viviparous (Xiphophorus) and oviparous (Danio, Oryzias) fishes
Q47226520Translating Knowledge Into Therapy for Acute Kidney Injury
Q34206971Using zebrafish to study podocyte genesis during kidney development and regeneration
Q30528767Wtip and Vangl2 are required for mitotic spindle orientation and cloaca morphogenesis
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Q55689509Zebrafish as a Model for Drug Screening in Genetic Kidney Diseases.

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