Exploring giant plant genomes with next-generation sequencing technology

scientific article published on October 2011

Exploring giant plant genomes with next-generation sequencing technology is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1007/S10577-011-9246-Z
P698PubMed publication ID21987187

P50authorLaura J. KellyQ64883831
Ilia J. LeitchQ42056872
P2860cites workDoubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of riceQ22065740
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in GossypiumQ22065742
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Draft genome sequence of the oilseed species Ricinus communisQ22122119
Genome sequencing and analysis of the model grass Brachypodium distachyonQ22122196
Genome sequence of the palaeopolyploid soybeanQ22122200
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Sequencing technologies - the next generationQ27860568
Nuclear DNA content and genome size of trout and humanQ28204636
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The origin, evolution and proposed stabilization of the terms 'genome size' and 'C-value' to describe nuclear DNA contentsQ28298127
Genome Size and Species DiversificationQ28742138
Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatulaQ28755920
Transposable elements and the evolution of regulatory networksQ28756349
Next-generation DNA sequencingQ29547447
ChIP-seq: advantages and challenges of a maturing technologyQ29615336
Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxuriansQ42707286
Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grassesQ42776729
Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparisonQ43044106
A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barleyQ47183283
Mechanisms and rates of genome expansion and contraction in flowering plants.Q52115877
The largest eukaryotic genome of them all?Q56048669
Estimation of nuclear DNA content in plants using flow cytometryQ57014941
Genome Size and its Uses: The Impact of Flow CytometryQ57067644
Genome Size Evolution in PlantsQ57067654
Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAsQ60534772
The epigenetic landscape of plantsQ81152836
Variation in nuclear DNA content in Malus species and cultivated applesQ82164294
The development and impact of 454 sequencingQ82255359
DNA transposons and the evolution of eukaryotic genomesQ29617153
A unified classification system for eukaryotic transposable elementsQ29617222
Transposable elements and the epigenetic regulation of the genomeQ29617224
The map-based sequence of the rice genomeQ29617329
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.Q30495793
Nuclear DNA C-values in 30 species double the familial representation in pteridophytesQ30845029
Transposable elements and an epigenetic basis for punctuated equilibriaQ33453627
Small RNAs, DNA methylation and transposable elements in wheatQ33618598
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequencesQ33627050
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).Q33719213
Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies.Q33771655
Nuclear DNA amounts in angiosperms: targets, trends and tomorrowQ33800794
Field guide to next-generation DNA sequencersQ33904607
Patching gaps in plant genomes results in gene movement and erosion of colinearityQ34085145
A window into third-generation sequencingQ34139314
Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estQ34184796
Nuclear DNA amounts in angiosperms: progress, problems and prospects.Q34582822
Genome evolution in the genus Sorghum (Poaceae)Q34582856
Smallest angiosperm genomes found in lentibulariaceae, with chromosomes of bacterial sizeQ34597826
Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia familiesQ34635609
Punctuated genome size evolution in Liliaceae.Q34705660
Transposable elements and the evolution of genome size in eukaryotesQ34790131
Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolutionQ35214955
Intraspecific variation in genome size in angiosperms: identifying its existenceQ35982449
Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotesQ36579703
Epigenetic regulation of transposable elements in plantsQ37324789
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plantsQ37394386
Transposable elements: powerful facilitators of evolutionQ37470360
Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?Q37471851
Insights from the comparison of plant genome sequencesQ37742162
Assembly of large genomes using second-generation sequencingQ37761251
Crop genome sequencing: lessons and rationalesQ37809918
Nuclear DNA amounts in angiospermsQ39100593
Genome size reduction through illegitimate recombination counteracts genome expansion in ArabidopsisQ39860924
P4510describes a project that usesmassive parallel sequencingQ6784807
P433issue7
P304page(s)939-953
P577publication date2011-10-01
P1433published inChromosome ResearchQ15765850
P1476titleExploring giant plant genomes with next-generation sequencing technology
P478volume19

Reverse relations

cites work (P2860)
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Q39314475Effects of introgression on the genetic population structure of two ecologically and economically important conifer species: lodgepole pine (Pinus contorta var. latifolia) and jack pine (Pinus banksiana).
Q42186981Endogenous pararetrovirus sequences associated with 24 nt small RNAs at the centromeres of Fritillaria imperialis L. (Liliaceae), a species with a giant genome
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Q36064318What's in a genome? The C-value enigma and the evolution of eukaryotic genome content
Q57067604Why size really matters when sequencing plant genomes

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