| scholarly article | Q13442814 |
| P50 | author | Fernando Casares | Q42054956 |
| Juan J Tena | Q42718731 | ||
| Manuel Irimia | Q30504280 | ||
| José Luis Gómez-Skarmeta | Q39997214 | ||
| Ignacio Maeso | Q42054951 | ||
| P2860 | cites work | Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome | Q21090196 |
| Noggin and Noggin-Like Genes Control Dorsoventral Axis Regeneration in Planarians | Q58484180 | ||
| Identification of a hot spot for microdeletions in patients with X- linked deafness type 3 (DFN3) 900 kb proximal to the DFN3 gene POU3F4 | Q59698036 | ||
| Highly conserved non-coding sequences are associated with vertebrate development | Q21092819 | ||
| Dorsoventral patterning in hemichordates: insights into early chordate evolution | Q21146042 | ||
| Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors | Q21183997 | ||
| Ultraconserved Elements in the Human Genome | Q22065813 | ||
| Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization | Q22065873 | ||
| Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding | Q22065896 | ||
| Insights into bilaterian evolution from three spiralian genomes | Q22122146 | ||
| An integrated encyclopedia of DNA elements in the human genome | Q22122150 | ||
| Genomic views of distant-acting enhancers | Q22122210 | ||
| The amphioxus genome and the evolution of the chordate karyotype | Q22122227 | ||
| Initial sequencing and comparative analysis of the mouse genome | Q22122521 | ||
| A global control region defines a chromosomal regulatory landscape containing the HoxD cluster | Q24301317 | ||
| Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes | Q24534193 | ||
| The accessible chromatin landscape of the human genome | Q24595581 | ||
| DNAase footprinting a simple method for the detection of protein-DNA binding specificity | Q24615638 | ||
| Histone H3K27ac separates active from poised enhancers and predicts developmental state | Q24628758 | ||
| Ultraconservation identifies a small subset of extremely constrained developmental enhancers | Q24648269 | ||
| The amphioxus genome illuminates vertebrate origins and cephalochordate biology | Q24650723 | ||
| Genomic regulatory blocks underlie extensive microsynteny conservation in insects | Q24684539 | ||
| Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes | Q24802518 | ||
| Beyond the ENCODE project: using genomics and epigenomics strategies to study enhancer evolution | Q26862414 | ||
| A framework for the establishment of a cnidarian gene regulatory network for "endomesoderm" specification: the inputs of ß-catenin/TCF signaling | Q27326696 | ||
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| Analysis of vertebrate SCL loci identifies conserved enhancers | Q28143951 | ||
| Scanning Human Gene Deserts for Long-Range Enhancers | Q28210571 | ||
| Histone modifications at human enhancers reflect global cell-type-specific gene expression | Q28238467 | ||
| An expansive human regulatory lexicon encoded in transcription factor footprints | Q28274429 | ||
| Gene expression divergence recapitulates the developmental hourglass model | Q28300651 | ||
| A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns | Q28300661 | ||
| Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention | Q42124559 | ||
| Circuitry and dynamics of human transcription factor regulatory networks | Q42150273 | ||
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| A Bmp/Admp regulatory circuit controls maintenance and regeneration of dorsal-ventral polarity in planarians | Q42239465 | ||
| Characterization of genomic regulatory domains conserved across the genus Drosophila | Q42366091 | ||
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| Convergent evolution of clustering of Iroquois homeobox genes across metazoans. | Q42654816 | ||
| A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts. | Q42662583 | ||
| Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates | Q42846668 | ||
| A switch between topological domains underlies HoxD genes collinearity in mouse limbs | Q45172307 | ||
| Anteroposterior patterning in hemichordates and the origins of the chordate nervous system | Q46108128 | ||
| Gene expansion and retention leads to a diverse tyrosine kinase superfamily in amphioxus | Q46542814 | ||
| Axial patterning in cephalochordates and the evolution of the organizer | Q46979382 | ||
| An evolutionarily conserved three-dimensional structure in the vertebrate Irx clusters facilitates enhancer sharing and coregulation. | Q47073861 | ||
| Regulatory divergence of the duplicated chromosomal loci sox11a/b by subpartitioning and sequence evolution of enhancers in zebrafish | Q47418783 | ||
| Comparative genomics of the SOX9 region in human and Fugu rubripes: conservation of short regulatory sequence elements within large intergenic regions | Q47597199 | ||
| From the American to the European amphioxus: towards experimental Evo-Devo at the origin of chordates. | Q47614444 | ||
| Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution | Q47773713 | ||
| Turnover of binding sites for transcription factors involved in early Drosophila development | Q48241765 | ||
| Evolution of Otx paralogue usages in early patterning of the vertebrate head | Q48886600 | ||
| Developmental milestones punctuate gene expression in the Caenorhabditis embryo. | Q51786897 | ||
| Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. | Q51827112 | ||
| The dynamic architecture of Hox gene clusters. | Q51850845 | ||
| Cis-regulation and chromosomal rearrangement of the fgf8 locus after the teleost/tetrapod split. | Q51925608 | ||
| Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes. | Q51944946 | ||
| A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies long-range ventral forebrain enhancers. | Q52028948 | ||
| Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. | Q52565016 | ||
| ENCODE: The human encyclopaedia. | Q55056659 | ||
| Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis | Q28307806 | ||
| Ancient deuterostome origins of vertebrate brain signalling centres | Q28675150 | ||
| Human developmental enhancers conserved between deuterostomes and protostomes | Q28728622 | ||
| An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement | Q28730815 | ||
| Evolution of gene regulatory networks controlling body plan development | Q28741140 | ||
| The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis | Q28763796 | ||
| A unique chromatin signature uncovers early developmental enhancers in humans | Q29614327 | ||
| Widespread transcription at neuronal activity-regulated enhancers | Q29614330 | ||
| A map of the cis-regulatory sequences in the mouse genome | Q29615404 | ||
| In vivo enhancer analysis of human conserved non-coding sequences | Q29616554 | ||
| Architecture of the human regulatory network derived from ENCODE data | Q29617046 | ||
| Early evolution of conserved regulatory sequences associated with development in vertebrates | Q33518467 | ||
| Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers | Q33549139 | ||
| Ultraconserved elements in insect genomes: a highly conserved intronic sequence implicated in the control of homothorax mRNA splicing | Q33841561 | ||
| Genome-wide identification of conserved regulatory function in diverged sequences | Q33917897 | ||
| Phenotypic robustness conferred by apparently redundant transcriptional enhancers | Q34017526 | ||
| Dissecting the transcriptional regulatory properties of human chromosome 16 highly conserved non-coding regions | Q34026313 | ||
| Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover | Q34135129 | ||
| Unexpected complexity of the Wnt gene family in a sea anemone | Q34384439 | ||
| Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state | Q34510126 | ||
| Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression | Q34518186 | ||
| Genomic evolution of Hox gene clusters | Q34569836 | ||
| Patterning the zebrafish diencephalon by the conserved zinc-finger protein Fezl | Q34590341 | ||
| Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in bilateria | Q34621236 | ||
| Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes | Q34646248 | ||
| The importance of being cis: evolution of orthologous fish and mammalian enhancer activity. | Q35022926 | ||
| Transphyletic conservation of developmental regulatory state in animal evolution | Q35180621 | ||
| Insights from human/mouse genome comparisons | Q35202514 | ||
| Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans | Q35751638 | ||
| Comparative genomics at the vertebrate extremes | Q35778678 | ||
| Development of the larval anterior neurogenic domains of Terebratalia transversa (Brachiopoda) provides insights into the diversification of larval apical organs and the spiralian nervous system | Q35858382 | ||
| DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila | Q36504410 | ||
| FGF signaling induces mesoderm in the hemichordate Saccoglossus kowalevskii | Q36640840 | ||
| Long-range downstream enhancers are essential for Pax6 expression | Q36661860 | ||
| Transcriptional and epigenetic dynamics during specification of human embryonic stem cells | Q37006585 | ||
| Global control regions and regulatory landscapes in vertebrate development and evolution | Q37087585 | ||
| Epigenomic annotation of enhancers predicts transcriptional regulators of human neural crest | Q37115627 | ||
| Global mapping of protein-DNA interactions in vivo by digital genomic footprinting | Q37157318 | ||
| The evolution of lineage-specific regulatory activities in the human embryonic limb | Q37202233 | ||
| Epigenomic analysis of multilineage differentiation of human embryonic stem cells | Q37205415 | ||
| Conservation of enhancer location in divergent insects | Q37321103 | ||
| Conserved noncoding elements and the evolution of animal body plans | Q37506291 | ||
| A developmental perspective: changes in the position of the blastopore during bilaterian evolution | Q37581140 | ||
| Eye evolution: common use and independent recruitment of genetic components. | Q37589950 | ||
| Evolutionary crossroads in developmental biology: amphioxus. | Q37949544 | ||
| Landscapes and archipelagos: spatial organization of gene regulation in vertebrates | Q38007713 | ||
| Ancient cis-regulatory constraints and the evolution of genome architecture | Q38116232 | ||
| Shadow enhancers as a source of evolutionary novelty | Q38287743 | ||
| Regulatory roles of conserved intergenic domains in vertebrate Dlx bigene clusters. | Q38452651 | ||
| A temporal chromatin signature in human embryonic stem cells identifies regulators of cardiac development | Q38458441 | ||
| Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes | Q38698645 | ||
| Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency. | Q38706933 | ||
| A regulatory archipelago controls Hox genes transcription in digits | Q39263747 | ||
| Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints | Q39327128 | ||
| Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development | Q39596997 | ||
| Identification of DPPA4 and other genes as putative Sox2:Oct-3/4 target genes using a combination of in silico analysis and transcription-based assays. | Q39998527 | ||
| Concept of neural genoarchitecture and its genomic fundament. | Q41106809 | ||
| The enhanceosome and transcriptional synergy. | Q41715800 | ||
| Tissue-specific transcriptional regulation has diverged significantly between human and mouse | Q41833705 | ||
| Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage | Q41852340 | ||
| Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis. | Q41888953 | ||
| Conserved developmental expression of Fezf in chordates and Drosophila and the origin of the Zona Limitans Intrathalamica (ZLI) brain organizer | Q42054894 | ||
| P433 | issue | 1632 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | cis-regulatory element | Q1093165 |
| P304 | page(s) | 20130020 | |
| P577 | publication date | 2013-11-11 | |
| P1433 | published in | Philosophical Transactions of the Royal Society B | Q2153239 |
| P1476 | title | Deep conservation of cis-regulatory elements in metazoans | |
| P478 | volume | 368 |
| Q28596350 | Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle |
| Q35558858 | Evolution of p53 transactivation specificity through the lens of a yeast-based functional assay |
| Q42909090 | Evolution of transcriptional enhancers and animal diversity. |
| Q90719299 | Functional conserved non-coding elements among tunicates and chordates |
| Q42284429 | Human evolution: the non-coding revolution |
| Q28079314 | Independent evolution of genomic characters during major metazoan transitions |
| Q39018235 | Origin and evolution of the metazoan non-coding regulatory genome |
| Q39320650 | Perspectives on Gene Regulatory Network Evolution |
| Q38267934 | Regulatory elements retained during chordate evolution: coming across tunicates |
| Q42912620 | Three Dimensional Organization of Genome Might Have Guided the Dynamics of Gene Order Evolution in Eukaryotes |
| Q28647431 | What does it take to evolve an enhancer? A simulation-based study of factors influencing the emergence of combinatorial regulation |
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