A general strategy for effector-mediated control of RNA-cleaving ribozymes and DNA enzymes

scientific article

A general strategy for effector-mediated control of RNA-cleaving ribozymes and DNA enzymes is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/S0022-2836(02)00046-3
P698PubMed publication ID12054766
P5875ResearchGate publication ID11318566

P2093author name stringDipankar Sen
Dennis Y Wang
Beatrice H Y Lai
P2860cites workA novel allosterically trans-activated ribozyme, the maxizyme, with exceptional specificity in vitro and in vivoQ40989781
Immobilized RNA switches for the analysis of complex chemical and biological mixturesQ43563007
In vitro selection of nucleoprotein enzymesQ43658805
Aptamer-based folding fluorescent sensor for cocaineQ43678096
Imidazole rescue of a cytosine mutation in a self-cleaving ribozymeQ44882244
Antibiotic inhibition of group I ribozyme functionQ47312331
Fluorescent Sensors Based on Aptamer Self-AssemblyQ50095601
Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP.Q52172539
Allosteric nucleic acid catalystsQ58001456
Design of allosteric hammerhead ribozymes activated by ligand-induced structure stabilizationQ58001471
Kinetics of intermolecular cleavage by hammerhead ribozymesQ67465203
Neomycin inhibition of the hammerhead ribozyme involves ionic interactionsQ72046600
Conformational differences between bulged pyrimidines (C-C) and purines (A-A, I-I) at the branch point of three-stranded DNA junctionsQ72826514
Training ribozymes to switchQ73133428
Global structure of three-way DNA junctions with and without additional unpaired bases: a fluorescence resonance energy transfer analysisQ73838667
Nucleic Acid Selection and the Challenge of Combinatorial ChemistryQ77646534
In Vitro Selection of Catalytic PolynucleotidesQ77646538
In vitro selection of an allosteric ribozyme that transduces analytes to ampliconsQ77910082
An Allosteric Ribozyme Regulated by DoxycylineQ88521884
Design and optimization of effector-activated ribozyme ligasesQ24515374
Molecular recognition in the FMN-RNA aptamer complexQ27732746
Structural basis of RNA folding and recognition in an AMP-RNA aptamer complexQ27733164
Structural basis of DNA folding and recognition in an AMP-DNA aptamer complex: distinct architectures but common recognition motifs for DNA and RNA aptamers complexed to AMPQ27748056
Inhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of TbQ27748758
ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODELQ27861036
A general purpose RNA-cleaving DNA enzymeQ28315030
Adaptive recognition by nucleic acid aptamersQ30836242
A new and efficient DNA enzyme for the sequence-specific cleavage of RNA.Q31035195
Nucleic acid molecular switchesQ33771875
In vitro selection of functional nucleic acidsQ33953593
Allosteric proteins and cellular control systemsQ33970893
An RNA motif that binds ATPQ34058538
A DNA aptamer that binds adenosine and ATP.Q34315786
Generating new ligand-binding RNAs by affinity maturation and disintegration of allosteric ribozymesQ34363503
Numbering system for the hammerheadQ35072408
Cooperative binding of effectors by an allosteric ribozymeQ35078618
Engineering precision RNA molecular switchesQ36444768
Rescue of abasic hammerhead ribozymes by exogenous addition of specific basesQ37257078
A novel mode of regulation of an RNA-cleaving DNAzyme by effectors that bind to both enzyme and substrateQ38299019
Molecular beacon aptamer fluoresces in the presence of Tat protein of HIV-1.Q38310688
Construction of new ribozymes requiring short regulator oligonucleotides as a cofactorQ38310939
Mechanism and utility of an RNA-cleaving DNA enzymeQ38333083
Structure, recognition and adaptive binding in RNA aptamer complexesQ38341704
Rational design of allosteric ribozymesQ38345361
Allosteric regulation of a ribozyme activity through ligand-induced conformational changeQ39724544
Stability and structure of three-way DNA junctions containing unpaired nucleotidesQ40531477
Enhancement of Neurospora VS ribozyme cleavage by tuberactinomycin antibiotics.Q40788721
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectribozymeQ205858
P304page(s)33-43
P577publication date2002-04-01
P1433published inJournal of Molecular BiologyQ925779
P1476titleA general strategy for effector-mediated control of RNA-cleaving ribozymes and DNA enzymes
P478volume318

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cites work (P2860)
Q40969439A general approach to the design of allosteric, transcription factor-regulated DNAzymes
Q25256587A modular DNA signal translator for the controlled release of a protein by an aptamer
Q42275458A plasmonic DNAzyme strategy for point-of-care genetic detection of infectious pathogens
Q38335364A selective adenosine sensor derived from a triplex DNA aptamer
Q48133029A synthetic suicide riboswitch for the high-throughput screening of metabolite production in Saccharomyces cerevisiae
Q39682158A versatile communication module for controlling RNA folding and catalysis
Q35623232An Efficient Catalytic DNA that Cleaves L-RNA.
Q54667225An allosteric DNAzyme with dual RNA-cleaving and DNA-cleaving activities.
Q24812318Bis-aptazyme sensors for hepatitis C virus replicase and helicase without blank signal
Q38204898Chemical sensing of neurotransmitters.
Q35992791Colorimetric biosensors based on DNAzyme-assembled gold nanoparticles
Q33791793DNA as a powerful tool for morphology control, spatial positioning, and dynamic assembly of nanoparticles
Q36186695DNA catalysis: potential, limitations, open questions
Q37970644Deoxyribozymes and bioinformatics: complementary tools to investigate axon regeneration
Q42949341Efficient signaling platforms built from a small catalytic DNA and doubly labeled fluorogenic substrates
Q35143126Exponential growth by cross-catalytic cleavage of deoxyribozymogens
Q52952791External regulation of hairpin ribozyme activity by an oligonucleotide effector.
Q30481633Functional nucleic acid sensors
Q55036498Identification of the Same Na(+)-Specific DNAzyme Motif from Two In Vitro Selections Under Different Conditions.
Q38288349In vitro selection and characterization of cellulose-binding RNA aptamers using isothermal amplification
Q50866416In vitro selection of RNA-cleaving DNAzymes for bacterial detection.
Q24540248In vitro selection of ribozymes dependent on peptides for activity
Q24817034In vitro selection, characterization, and application of deoxyribozymes that cleave RNA
Q38968316Ligand-dependent ribozymes
Q41665478Lighting Up RNA-Cleaving DNAzymes for Biosensing
Q37589504Modulating RNA structure and catalysis: lessons from small cleaving ribozymes
Q26742129Optical Aptasensors for Adenosine Triphosphate
Q55026049Proximity ligation-induced assembly of DNAzymes for simple and cost-effective colourimetric detection of proteins with high sensitivity.
Q35107854Ribozymes: recent advances in the development of RNA tools
Q35089620Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA.
Q41825475Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme
Q33306706Simple fluorescent sensors engineered with catalytic DNA 'MgZ' based on a non-classic allosteric design
Q38302569Transcription factor decoy against stem cells master regulators, Nanog and Oct-4: a possible approach for differentiation therapy
Q27472971Zeptomole detection of a viral nucleic acid using a target-activated ribozyme

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