| scholarly article | Q13442814 |
| P356 | DOI | 10.1016/0022-2836(88)90383-X |
| P698 | PubMed publication ID | 2451022 |
| P2093 | author name string | Brimacombe R | |
| Atmadja J | |||
| Schüler D | |||
| Stiege W | |||
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Escherichia coli | Q25419 |
| P304 | page(s) | 115-136 | |
| P577 | publication date | 1988-01-01 | |
| P1433 | published in | Journal of Molecular Biology | Q925779 |
| P1476 | title | A detailed model of the three-dimensional structure of Escherichia coli 16 S ribosomal RNA in situ in the 30 S subunit | |
| P478 | volume | 199 |
| Q52482365 | A conformational switch involving the 915 region of Escherichia coli 16 S ribosomal RNA. |
| Q36700690 | A consonant model of the tRNA-ribosome complex during the elongation cycle of translation |
| Q40392856 | A genetic algorithm based molecular modeling technique for RNA stem-loop structures |
| Q40872568 | A methyl jasmonate-induced shift in the length of the 5' untranslated region impairs translation of the plastid rbcL transcript in barley. |
| Q41094259 | A model for the spatial arrangement of the proteins in the large subunit of the Escherichia coli ribosome. |
| Q35000709 | A molecular basis for human hypersensitivity to aminoglycoside antibiotics |
| Q35885754 | A paradigm for local conformational control of function in the ribosome: binding of ribosomal protein S19 to Escherichia coli 16S rRNA in the presence of S7 is required for methylation of m2G966 and blocks methylation of m5C967 by their respective m |
| Q39478519 | A ribosomal ATPase is a target for hygromycin B inhibition on Escherichia coli ribosomes |
| Q40518419 | Alternative base pairing between 5'- and 3'-terminal sequences of small subunit RNA may provide the basis of a conformational switch of the small ribosomal subunit |
| Q77847228 | Analysis of a nonlinear model for the DNA double helix: Energy transfer in an inhomogeneous chain |
| Q36830678 | Analysis of the tertiary structure of bacterial RNase P RNA. |
| Q68321454 | Approaching the molecular structure of ribosomes |
| Q35815732 | Aspects in structural studies on ribosomes |
| Q37594740 | Assembly of the Escherichia coli 30S ribosomal subunit reveals protein-dependent folding of the 16S rRNA domains |
| Q33579754 | Base changes at position 792 of Escherichia coli 16S rRNA affect assembly of 70S ribosomes |
| Q39722712 | Base complementarity in helix 2 of the central pseudoknot in 16S rRNA is essential for ribosome functioning |
| Q38703176 | Challenging the three-dimensional structure of ribosomes |
| Q68002973 | Characterization of crystals of small ribosomal subunits |
| Q40998340 | Chemical and computer probing of RNA structure. |
| Q24634608 | Chloroplast ribosomes and protein synthesis |
| Q34780491 | Cloning and characterisation of the gene encoding the ribosomal protein S5 (also known as rp14, S2, YS8) of Saccharomyces cerevisiae |
| Q37658068 | Comparative biochemistry and biophysics of ribosomal proteins |
| Q36909399 | Computational studies of molecular machines: the ribosome |
| Q40504946 | Conformation and structural fluctuations of a 218 nucleotides long rRNA fragment: 4-thiouridine as an intrinsic photolabelling probe |
| Q48514723 | Conformational analysis of 16 S ribosomal RNA from Escherichia coli by scanning transmission electron microscopy |
| Q41632818 | Conformational variability in Escherichia coli 70S ribosome as revealed by 3D cryo-electron microscopy |
| Q40533897 | Conformity of RNAs that interact with tetranucleotide loop binding proteins |
| Q40411066 | Contacts between 16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine-Dalgarno sequence; a site-directed cross-linking study |
| Q73509276 | Context dependent RNA-RNA recognition in a three-dimensional model of the 16S rRNA core |
| Q40544728 | Covalent cross-linking of poly(A) to Escherichia coli ribosomes, and localization of the cross-link site within the 16S RNA |
| Q27731560 | Crystal structure of prokaryotic ribosomal protein L9: a bi-lobed RNA-binding protein |
| Q41635771 | Crystals of complexes mimicking protein biosynthesis are suitable for crystallographic studies |
| Q40503518 | Direct tRNA-protein interactions in ribosomal complexes |
| Q39097031 | Effects of base change mutations within an Escherichia coli ribosomal RNA leader region on rRNA maturation and ribosome formation |
| Q41932877 | Electron microscopy of U4/U6 snRNP reveals a Y-shaped U4 and U6 RNA containing domain protruding from the U4 core RNP. |
| Q36159046 | Escherichia coli 4.5S RNA gene function can be complemented by heterologous bacterial RNA genes |
| Q36103824 | Evidence for functional interaction between elongation factor Tu and 16S ribosomal RNA. |
| Q33852556 | Evidence for several higher order structural elements in ribosomal RNA. |
| Q34809895 | Evolutionary conservation of reactions in translation |
| Q52457234 | Explicit distance geometry: identification of all the degrees of freedom in a large RNA molecule. |
| Q40874102 | Formation of the central pseudoknot in 16S rRNA is essential for initiation of translation |
| Q41043845 | Fragmentation of the ribosome to investigate RNA-ligand interactions |
| Q68222179 | Functional topography of human ribosomes as studied by affinity labeling with reactive mRNA analogs |
| Q41043595 | Getting closer to an understanding of the three-dimensional structure of ribosomal RNA. |
| Q40534982 | Helix 6 of the 16S rRNA of the bacteriumDesulfotomaculum australicumexhibits an unusual structural idiosyncrasy |
| Q40547686 | How are tRNAs and mRNA arranged in the ribosome? An attempt to correlate the stereochemistry of the tRNA-mRNA interaction with constraints imposed by the ribosomal topography. |
| Q38460933 | Identification of lncRNA MEG3 Binding Protein Using MS2-Tagged RNA Affinity Purification and Mass Spectrometry. |
| Q41043753 | Identification of ribosome-ligand interactions using cleavage reagents |
| Q35781737 | In vitro assembly of a ribonucleoprotein particle corresponding to the platform domain of the 30S ribosomal subunit |
| Q41134826 | Inter-protein distances within the large subunit from Escherichia coli ribosomes |
| Q34975542 | Interaction ofEscherichia coliribosomal protein S7 with 16S rRNA |
| Q40546127 | Intra-RNA cross-linking in Escherichia coli 30S ribosomal subunits: selective isolation of cross-linked products by hybridization to specific cDNA fragments |
| Q67705362 | Localization of a segment of 16S RNA on the surface of the small ribosomal subunit by immune electron microscopy of complementary oligodeoxynucleotides |
| Q40526724 | Localization of a series of RNA-protein cross-link sites in the 23S and 5S ribosomal RNA fromEscherichia coli, induced by treatment of 50S subunits with three different bifunctional reagents |
| Q35907395 | Localization of an oligodeoxynucleotide complementing 16S ribosomal RNA residues 520–531 on the small subunit ofEscherichia coilribosomes: electron microscopy of ribosome-cDNA-antibody complexes |
| Q74256664 | Mapping proteins of the 50S subunit from Escherichia coli ribosomes |
| Q46303425 | Mapping the position of translational elongation factor EF-G in the ribosome by directed hydroxyl radical probing |
| Q37734418 | Massive parallel-sequencing-based hydroxyl radical probing of RNA accessibility |
| Q42562626 | Matching the crystallographic structure of ribosomal protein S7 to a three-dimensional model of the 16S ribosomal RNA. |
| Q41095207 | Messenger RNA recognition in Escherichia coli: a possible second site of interaction with 16S ribosomal RNA. |
| Q34364231 | Mining biochemical information: lessons taught by the ribosome |
| Q34115394 | Modeling large RNAs and ribonucleoprotein particles using molecular mechanics techniques |
| Q40966752 | Modeling the structure of the ribosome |
| Q41708894 | Molecular movement inside the translational engine |
| Q34285685 | Mutation at position 791 in Escherichia coli 16S ribosomal RNA affects processes involved in the initiation of protein synthesis |
| Q35775424 | Mutations in 16S rRNA inEscherichia coliat methyl-modified sites: G966, C967, and G1207 |
| Q40505423 | Mutations in the 915 region ofEscherichia coli16S ribosomal RNA reduce the binding of streptomycin to the ribosome |
| Q36064086 | Mutations within the decoding site of Escherichia coli 16S rRNA: growth rate impairment, lethality and intragenic suppression |
| Q40531505 | Neighbourhood of the central fold of the tRNA molecule bound to theE.coliribosome—affinity labeling studies with modified tRNAs carrying photoreactive probes attached to the dihydrouridine loop |
| Q40521789 | New RNA-protein crosslinks in domains 1 and 2 of E. coli 30S ribosomal subunits obtained by means of an intrinsic photoaffinity probe |
| Q43206244 | New features of 23S ribosomal RNA folding: the long helix 41-42 makes a "U-turn" inside the ribosome |
| Q36694739 | Phenotypic effects of targeted mutations in the small subunit rRNA gene of Tetrahymena thermophila |
| Q35220815 | Phylogenetic evidence for tertiary interactions in 16S-like ribosomal RNA |
| Q40401398 | Phylogenetically preserved inter-rRNA base pairs: involvement in ribosomal subunit association |
| Q41043681 | Pleiotropic effects of mutations at positions 13 and 914 in Escherichia coli 16S ribosomal RNA. |
| Q38310915 | Positions 13 and 914 in Escherichia coli 16S ribosomal RNA are involved in the control of translational accuracy |
| Q34361951 | Positions in the 30S ribosomal subunit proximal to the 790 loop as determined by phenanthroline cleavage |
| Q37713857 | Prediction of the three-dimensional structure of Escherichia coli 30S ribosomal subunit: a molecular mechanics approach |
| Q44431563 | Prediction of three-dimensional structure of Escherichia coli ribosomal RNA. |
| Q74125267 | Preparation of a 'beheaded' derivative of the 30S ribosomal subunit |
| Q68061292 | Presence of a 16S rRNA pseudogene in the bi-molecular plastid genome of the primitive brown alga Pylaiella littoralis. Evolutionary implications |
| Q40544352 | Protein binding sites on Escherichia coli 16S ribosomal RNA; RNA regions that are protected by proteins S7, S9 and S19, and by proteins S8, S15 and S17. |
| Q70179013 | Purification of E. coli 30S ribosomal proteins by high-performance liquid chromatography under non-denaturing conditions |
| Q36700685 | RNA-protein interactions in the Escherichia coli ribosome |
| Q30464210 | Relative orientation of RNA helices in a group 1 ribozyme determined by helix extension electron microscopy |
| Q34048416 | Replacement of the L11 binding region within E.coli 23S ribosomal RNA with its homologue from yeast: in vivo and in vitro analysis of hybrid ribosomes altered in the GTPase centre |
| Q56463555 | Ribosomal Protein L9: A Structure Determination by the Combined Use of X-ray Crystallography and NMR Spectroscopy |
| Q27745831 | Ribosomal protein S7: a new RNA-binding motif with structural similarities to a DNA architectural factor |
| Q47923424 | Ribosomal proteins S5 and L6: high-resolution crystal structures and roles in protein synthesis and antibiotic resistance |
| Q40538677 | Ribosomal proteins S7 and L1 are located close to the decoding site of E. coli ribosome--affinity labeling studies with modified tRNAs carrying photoreactive probes attached adjacent to the 3'-end of the anticodon |
| Q52995086 | Ribosomal tRNA binding sites: three-site models of translation. |
| Q38339723 | Selective isolation and detailed analysis of intra-RNA cross-links induced in the large ribosomal subunit of E. coli: a model for the tertiary structure of the tRNA binding domain in 23S RNA |
| Q54643002 | Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in protein S12. |
| Q40412652 | Separation of mutant and wild-type ribosomes based on differences in their anti Shine-Dalgarno sequence |
| Q36774937 | Sequence and functional similarity between a yeast ribosomal protein and the Escherichia coli S5 ram protein |
| Q33718614 | Sequence and secondary structure of the mitochondrial small-subunit rRNA V4, V6, and V9 domains reveal highly species-specific variations within the genus Agrocybe |
| Q40407824 | Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between '+1' and '+16' on the mRNA, downstream from the decoding site |
| Q40539637 | Site-directed cross-linking of mRNA analogues to the Escherichia coli ribosome; identification of 30S ribosomal components that can be cross-linked to the mRNA at various points 5' with respect to the decoding site |
| Q40405431 | Site-directed cross-linking studies on theE.colitRNA ribosome complex: determination of sites labelled with an aromatic azide attached to the variable loop or aminoacyl group of tRNA |
| Q39946380 | Site-specific methylation of 16S rRNA caused by pct, a pactamycin resistance determinant from the producing organism, Streptomyces pactum |
| Q53295296 | Site‐specific cleavage of the 40S ribosomal subunit reveals eukaryote‐specific ribosomal protein S28 in the subunit head |
| Q40225145 | Spectinomycin interacts specifically with the residues G1064 and C1192 in 16S rRNA, thereby potentially freezing this molecule into an inactive conformation |
| Q33979545 | Spectinomycin resistance in Neisseria spp. due to mutations in 16S rRNA. |
| Q36677437 | Structural Elements in RNA |
| Q40527004 | Structural analysis of the 5' domain of the HeLa 18S ribosomal RNA by chemical and enzymatic probing |
| Q34770197 | Structural changes in the 530 loop of Escherichia coli 16S rRNA in mutants with impaired translational fidelity |
| Q40666957 | Structural dynamics of translating ribosomes: 16S ribosomal RNA bases that may move twice during translocation |
| Q38206602 | Structure and function of signal recognition particle RNA. |
| Q41043708 | Structures of prokaryotic ribosomal proteins: implications for RNA binding and evolution |
| Q42515549 | Structures of small subunit ribosomal RNAs in situ from Escherichia coli and Thermomyces lanuginosus |
| Q38005748 | Suppression and the code: beyond codons and anticodons |
| Q41634292 | The 70S Escherichia coli ribosome at 23 A resolution: fitting the ribosomal RNA. |
| Q41114152 | The Escherichia coli 30S ribosomal subunit; an optimized three-dimensional fit between the ribosomal proteins and the 16S RNA. |
| Q33366858 | The Structure of Ribosomal RNA: A Three-Dimensional Jigsaw Puzzle |
| Q67811200 | The absence of modified nucleotides affects both in vitro assembly and in vitro function of the 30S ribosomal subunit of Escherichia coli |
| Q34083731 | The bacterial ribosome at atomic resolution |
| Q34291829 | The binding site for ribosomal protein S8 in 16S rRNA and spc mRNA from Escherichia coli: minimum structural requirements and the effects of single bulged bases on S8-RNA interaction |
| Q39717683 | The central pseudoknot in 16S ribosomal RNA is needed for ribosome stability but is not essential for 30S initiation complex formation |
| Q37407068 | The conserved GTPase center and variable region V9 from Saccharomyces cerevisiae 26S rRNA can be replaced by their equivalents from other prokaryotes or eukaryotes without detectable loss of ribosomal function |
| Q40792153 | The decoding region of 16S RNA; a cross-linking study of the ribosomal A, P and E sites using tRNA derivatized at position 32 in the anticodon loop |
| Q40515510 | The initiation of translation in E. coli: apparent base pairing between the 16srRNA and downstream sequences of the mRNA |
| Q67712313 | The interaction between streptomycin and ribosomal RNA |
| Q41082182 | The location of mRNA in the ribosomal 30S initiation complex; site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon |
| Q48077812 | The mitochondrial ribosomal RNA genes of the nematodes Caenorhabditis elegans and Ascaris suum: consensus secondary-structure models and conserved nucleotide sets for phylogenetic analysis |
| Q40421868 | The nature of preferred hairpin structures in 16S-like rRNA variable regions |
| Q28263677 | The numerous modified nucleotides in eukaryotic ribosomal RNA |
| Q41081786 | The path of mRNA through the Escherichia coli ribosome; site-directed cross-linking of mRNA analogues carrying a photo-reactive label at various points 3' to the decoding site. |
| Q40396746 | The ribosomal neighbourhood of the central fold of tRNA: cross-links from position 47 of tRNA located at the A, P or E site |
| Q54264128 | The structure of ribosomal protein S5 reveals sites of interaction with 16S rRNA |
| Q40504828 | The three-dimensional folding of ribosomal RNA; localization of a series of intra-RNA cross-links in 23S RNA induced by treatment ofEscherichia coli50S ribosomal subunits withbis-(2-chloroethyl)-methylamine |
| Q40421564 | The topography of the 3'-terminal region of Escherichia coli 16S ribosomal RNA; an intra-RNA cross-linking study |
| Q33959932 | The yeast omnipotent suppressor SUP46 encodes a ribosomal protein which is a functional and structural homolog of the Escherichia coli S4 ram protein |
| Q38327166 | Three widely separated positions in the 16S RNA lie in or close to the ribosomal decoding region; a site-directed cross-linking study with mRNA analogues |
| Q41168564 | Throwing a spanner in the works: antibiotics and the translation apparatus |
| Q67705363 | Topography of the Escherichia coli ribosomal 30S subunit-initiation factor 2 complex |
| Q37635662 | Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA |
| Q39645080 | Visualizing the solvent-inaccessible core of a group II intron ribozyme |
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