The ribosome challenge to the RNA world

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The ribosome challenge to the RNA world is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P6179Dimensions Publication ID1032009398
P356DOI10.1007/S00239-015-9669-9
P698PubMed publication ID25739364
P5875ResearchGate publication ID273149903

P50authorNicholas V. HudQ47307560
P2093author name stringLoren Dean Williams
Jessica C Bowman
P2860cites workAn expanded set of amino acid analogs for the ribosomal translation of unnatural peptidesQ21144426
On the evolution of the standard amino-acid alphabetQ21184155
Carbonaceous meteorites contain a wide range of extraterrestrial nucleobasesQ22066300
Rewiring the keyboard: evolvability of the genetic codeQ22122388
Origin of life: The RNA worldQ22122409
Central Dogma of Molecular BiologyQ22122430
RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzymeQ24311798
Design and optimization of effector-activated ribozyme ligasesQ24515374
Critical review of host specificity and its coevolutionary implications in the fig/fig-wasp mutualismQ24527372
On the evolution of cellsQ24530769
Phylogenetic structure of the prokaryotic domain: The primary kingdomsQ24564821
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easyQ24603196
Modern metabolism as a palimpsest of the RNA worldQ24607355
The RNA world hypothesis: the worst theory of the early evolution of life (except for all the others)(a)Q24614775
Amino acid specificity in translationQ81422828
Minimal transition state charge stabilization of the oxyanion during peptide bond formation by the ribosomeQ82246901
High molecular diversity of extraterrestrial organic matter in Murchison meteorite revealed 40 years after its fallQ24625141
The origins of the RNA worldQ24634162
Universal sequence replication, reversible polymerization and early functional biopolymers: a model for the initiation of prebiotic sequence evolutionQ27305366
X-ray crystal structures of 70S ribosome functional complexesQ27619733
The complete atomic structure of the large ribosomal subunit at 2.4 A resolutionQ27626400
The structural basis of ribosome activity in peptide bond synthesisQ27626414
Structure of the 30S ribosomal subunitQ27627261
The kink-turn: a new RNA secondary structure motifQ27633834
High resolution structure of the large ribosomal subunit from a mesophilic eubacteriumQ27636568
Structure of a mitochondrial ribosome with minimal RNAQ27655743
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolutionQ27665394
Crystal structure of the eukaryotic ribosomeQ27666069
Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1Q27666453
The structural basis of RNA-catalyzed RNA polymerizationQ27671854
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosomeQ27676277
Structure of the Yeast Mitochondrial Large Ribosomal SubunitQ27682617
Structures of the human and Drosophila 80S ribosomeQ27684535
Architecture of the large subunit of the mammalian mitochondrial ribosomeQ27688018
Structure of the 70S ribosome complexed with mRNA and tRNAQ27860602
The economics of ribosome biosynthesis in yeastQ28131645
Synthesizing lifeQ28201137
The RNA moiety of ribonuclease P is the catalytic subunit of the enzymeQ28262778
How do serine proteases really work?Q28270931
Evolution and tinkeringQ28276084
Unconventional serine proteases: variations on the catalytic Ser/His/Asp triad configurationQ28295493
Characterization of the yeast transcriptomeQ28302110
RNA folding and catalysis mediated by iron (II)Q28484063
Evolution of the ribosome at atomic resolutionQ28655503
Secondary structure and domain architecture of the 23S and 5S rRNAsQ28681442
Molecular paleontology: a biochemical model of the ancestral ribosomeQ28703593
An exit cavity was crucial to the polymerase activity of the early ribosomeQ28732449
A vestige of a prebiotic bonding machine is functioning within the contemporary ribosomeQ28741190
The chemical versatility of RNAQ28741195
Misacylation of specific nonmethionyl tRNAs by a bacterial methionyl-tRNA synthetaseQ34880775
A hierarchical model for evolution of 23S ribosomal RNA.Q34947704
Topological structure analysis of the protein-protein interaction network in budding yeastQ34980439
Highly efficient self-replicating RNA enzymesQ35081757
Secondary structures of rRNAs from all three domains of lifeQ35088620
Structural basis for mRNA and tRNA positioning on the ribosomeQ35127488
Regulation of mRNA translation by protein folding in the endoplasmic reticulumQ35683458
Secondary structure model for 23S ribosomal RNA.Q35746215
Structural analyses clarify the complex control of mistranslation by tRNA synthetasesQ35784913
Unique features of animal mitochondrial translation systems. The non-universal genetic code, unusual features of the translational apparatus and their relevance to human mitochondrial diseasesQ36159449
Mitochondrial evolution.Q36192920
Misacylation of tRNA with methionine in Saccharomyces cerevisiaeQ36368822
The origin and evolution of the ribosomeQ36662496
Development of tRNA synthetases and connection to genetic code and diseaseQ36901628
Origin and evolution of the ribosomeQ28749592
Molecular signatures of ribosomal evolutionQ28757251
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structureQ29547343
The SILVA ribosomal RNA gene database project: improved data processing and web-based toolsQ29547623
The origin of the genetic codeQ29547681
Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymenaQ29615409
Interaction network containing conserved and essential protein complexes in Escherichia coliQ29615776
Evolution of the genetic apparatusQ29617368
Molecular Architecture and Biological ReactionsQ30052248
Ribozymes, the first 20 yearsQ30310222
Crawling out of the RNA worldQ30447925
Spontaneous prebiotic formation of a β-ribofuranoside that self-assembles with a complementary heterocycleQ30712744
The ribosome as an entropy trapQ30930830
Inferring the ancient history of the translation machinery and genetic code via recapitulation of ribosomal subunit assembly ordersQ30979139
On the origin of the translation system and the genetic code in the RNA world by means of natural selection, exaptation, and subfunctionalizationQ33286326
Ribosomal synthesis of N-methyl peptidesQ33327536
The Rodin-Ohno hypothesis that two enzyme superfamilies descended from one ancestral gene: an unlikely scenario for the origins of translation that will not be dismissed.Q33358611
Polymerization of alpha-hydroxy acids by ribosomesQ33382793
Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiontQ33483324
Interpreting the universal phylogenetic treeQ33910024
How ribosomes make peptide bondsQ34001369
What recent ribosome structures have revealed about the mechanism of translationQ34019810
Ribozyme-catalyzed transcription of an active ribozymeQ34176686
The ribosome: a molecular machine powered by RNA.Q34225447
Polynucleotide synthesis and the genetic codeQ34231043
One core, two shells: bacterial and eukaryotic ribosomes.Q34278932
Crystal structure of the 80S yeast ribosomeQ34293410
Spontaneous network formation among cooperative RNA replicatorsQ34306710
Translation: in retrospect and prospectQ34332282
The "strong" RNA world hypothesis: fifty years old.Q34336683
The contribution of metal ions to the structural stability of the large ribosomal subunitQ34365980
The path from the RNA world.Q34451259
Relics from the RNA worldQ34451265
A cross-chiral RNA polymerase ribozymeQ34550737
Characterization of functionally active subribosomal particles from Thermus aquaticusQ34791461
Deciphering the rules by which 5'-UTR sequences affect protein expression in yeastQ34801786
A structural understanding of the dynamic ribosome machineQ37091739
Ribosomal synthesis of nonstandard peptidesQ37149912
Aminoacylating urzymes challenge the RNA world hypothesisQ37168470
A recurrent magnesium-binding motif provides a framework for the ribosomal peptidyl transferase centerQ37215335
Different aa-tRNAs are selected uniformly on the ribosomeQ37260139
A structural view on the mechanism of the ribosome-catalyzed peptide bond formationQ37549187
Ancient machinery embedded in the contemporary ribosomeQ37713823
Protein translocation across the ER membraneQ37769777
The mechanism of peptidyl transfer catalysis by the ribosomeQ37872768
Structural studies of RNase P.Q38105116
New structural insights into the decoding mechanism: translation infidelity via a G·U pair with Watson-Crick geometryQ38109383
The RNA World: molecular cooperation at the origins of lifeQ38266759
Abiotic synthesis of RNA in water: a common goal of prebiotic chemistry and bottom-up synthetic biologyQ38273423
The origin of RNA and "my grandfather's axe".Q38565665
Comparisons of large subunit rRNAs reveal some eukaryote-specific elements of secondary structureQ38595858
The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA In higher eukaryotesQ40455375
Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidenceQ40481405
Viral quasispecies.Q40828271
Ribosomal RNA: a key to phylogeny.Q40870307
Structure of the Mammalian Mitochondrial Ribosome Reveals an Expanded Functional Role for Its Component ProteinsQ41628956
Cospeciation between bacterial endosymbionts (Buchnera) and a recent radiation of aphids (Uroleucon) and pitfalls of testing for phylogenetic congruenceQ41754342
The rate enhancement produced by the ribosome: an improved modelQ42163692
Ribosome-catalyzed ester formationQ44562648
Amino acid backbone specificity of the Escherichia coli translation machineryQ45093901
Efficient self-assembly in water of long noncovalent polymers by nucleobase analogues.Q45916152
Peeling the onion: ribosomes are ancient molecular fossilsQ47578615
Oceans. Elements and evolutionQ47635253
Ribosome-catalyzed polyester formationQ47748884
Evolution of large-subunit rRNA structure. The diversification of divergent D3 domain among major phylogenetic groupsQ48272830
RNA with iron(II) as a cofactor catalyses electron transfer.Q50972828
A small catalytic RNA motif with Diels-Alderase activity.Q52221902
Ribosome-catalyzed formation of an abnormal peptide analogue.Q54774257
9. The Ribosome: A Molecular Machine Powered by RNAQ56172178
Landscapes and Effective FitnessQ56991673
How Mitochondria Redefine the CodeQ56999492
The origins of cellular lifeQ57134882
The Geometry of the Ribosomal Polypeptide Exit TunnelQ57954617
Translational Operator of mRNA on the Ribosome: How Repressor Proteins Exclude Ribosome BindingQ57980827
Chemical fidelity of an RNA polymerase ribozymeQ59004087
Synthesis of thioamide bond catalyzed by E. coli ribosomesQ67493517
Subtilisin. Stereochemical mechanism involving transition-state stabilizationQ70498789
The nucleic acid content of influenza virusQ73644629
The isolation and characterization of a macro-molecular ribonucleoprotein from yeastQ73926560
Modeling a minimal ribosome based on comparative sequence analysisQ74529126
P433issue3-4
P304page(s)143-161
P577publication date2015-03-05
P1433published inJournal of Molecular EvolutionQ6295595
P1476titleThe ribosome challenge to the RNA world
P478volume80

Reverse relations

cites work (P2860)
Q111629508A ribonucleopeptide world at the origin of life
Q36002602A symbiotic view of the origin of life at hydrothermal impact crater-lakes
Q55411254Cellular conditions of weakly chelated magnesium ions strongly promote RNA stability and catalysis.
Q90044317Circular code motifs in the ribosome: a missing link in the evolution of translation?
Q47325408Coding of Class I and II Aminoacyl-tRNA Synthetases
Q47250308Could a Proto-Ribosome Emerge Spontaneously in the Prebiotic World?
Q53705205Does the Ribosome Challenge our Understanding of the RNA World?
Q33364443Emergence of Life on Earth: A Physicochemical Jigsaw Puzzle
Q89723844Emerging Frontiers in the Study of Molecular Evolution
Q46856027Functional 5' UTR mRNA structures in eukaryotic translation regulation and how to find them
Q90282244Hierarchical groove discrimination by Class I and II aminoacyl-tRNA synthetases reveals a palimpsest of the operational RNA code in the tRNA acceptor-stem bases
Q88528281In the Beginning was a Mutualism - On the Origin of Translation
Q46757795Interdependence, Reflexivity, Fidelity, Impedance Matching, and the Evolution of Genetic Coding
Q57048101Possible Emergence of Sequence Specific RNA Aminoacylation via Peptide Intermediary to Initiate Darwinian Evolution and Code Through Origin of Life
Q64241476Prebiotic Iron Originates the Peptidyl Transfer Origin
Q60939686Ribosome Structure, Function, and Early Evolution
Q38605162Surveying the sequence diversity of model prebiotic peptides by mass spectrometry.
Q64081745The Origin of Prebiotic Information System in the Peptide/RNA World: A Simulation Model of the Evolution of Translation and the Genetic Code
Q60922151The Ribosome as a Missing Link in Prebiotic Evolution III: Over-Representation of tRNA- and rRNA-Like Sequences and Plieofunctionality of Ribosome-Related Molecules Argues for the Evolution of Primitive Genomes from Ribosomal RNA Modules
Q28602755The TIM Barrel Architecture Facilitated the Early Evolution of Protein-Mediated Metabolism
Q46598771The generation of meaningful information in molecular systems
Q36325067The progene hypothesis: the nucleoprotein world and how life began
Q40994892Thermal Condensation of Glycine and Alanine on Metal Ferrite Surface: Primitive Peptide Bond Formation Scenario
Q58581331Type-II tRNAs and Evolution of Translation Systems and the Genetic Code

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