| scholarly article | Q13442814 |
| review article | Q7318358 |
| P356 | DOI | 10.1016/0092-8674(89)90574-6 |
| P8608 | Fatcat ID | release_kzlvikk7wfd7lbjo34lpbpfn5m |
| P698 | PubMed publication ID | 2645054 |
| P2093 | author name string | Pruss GJ | |
| Drlica K | |||
| P433 | issue | 4 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 521-523 | |
| P577 | publication date | 1989-02-01 | |
| P1433 | published in | Cell | Q655814 |
| P1476 | title | DNA supercoiling and prokaryotic transcription | |
| P478 | volume | 56 |
| Q28541698 | A biochemical analysis of the interaction of Porphyromonas gingivalis HU PG0121 protein with DNA |
| Q33917768 | A biochemical mechanism for nonrandom mutations and evolution |
| Q38333433 | A cis-spreading nucleoprotein filament is responsible for the gene silencing activity found in the promoter relay mechanism |
| Q34246827 | A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding |
| Q34800691 | A multiscale dynamic model of DNA supercoil relaxation by topoisomerase IB. |
| Q39895612 | A mutation in a new gene of Escherichia coli, psu, requires secondary mutations for survival: psu mutants express a pleiotropic suppressor phenotype |
| Q33723732 | A promoter relay mechanism for sequential gene activation |
| Q34759634 | A rapid procedure to purify Escherichia coli DNA topoisomerase I |
| Q28533041 | Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence |
| Q39930614 | Activation of the leu-500 promoter by adjacent transcription |
| Q37209616 | Activity of a plasmid-borne leu-500 promoter depends on the transcription and translation of an adjacent gene |
| Q54651138 | Altered topoisomerase activities may be involved in the regulation of DNA supercoiling in aerobic-anaerobic transitions in Escherichia coli. |
| Q38337179 | Analysis of hydrostatic pressure effects on transcription in Escherichia coli by DNA microarray procedure |
| Q35894739 | Antisense transcription as a tool to tune gene expression |
| Q57970482 | Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications |
| Q36147307 | Bacterial DNA supercoiling and [ATP]/[ADP] ratio: changes associated with salt shock |
| Q37346556 | Bacterial DNA topology and infectious disease. |
| Q34635583 | Bacterial osmoadaptation: the role of osmolytes in bacterial stress and virulence. |
| Q36494028 | Bacterial virulence: an environmental response |
| Q30887163 | CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data |
| Q48293868 | CSM murray award lecture - functional studies of the Lyme disease spirochete - from molecules to mice |
| Q36474333 | Characterization of the Two Mycobacterium tuberculosis recA Promoters |
| Q64095839 | Chromosome and plasmid-borne P promoters differ in sensitivity to critically low temperatures |
| Q64054399 | Circadian rhythms in the three-dimensional genome: implications of chromatin interactions for cyclic transcription |
| Q36277040 | Circadian rhythms of superhelical status of DNA in cyanobacteria |
| Q35943707 | Circadian timing mechanism in the prokaryotic clock system of cyanobacteria |
| Q43810844 | Coexistence of different base periodicities in prokaryotic genomes as related to DNA curvature, supercoiling, and transcription |
| Q39760272 | Coexistence of twisted, plectonemic, and melted DNA in small topological domains. |
| Q35923809 | Common sequence determinants of the response of a prokaryotic promoter to DNA bending and supercoiling |
| Q35807531 | Coumermycin A1 inhibits growth and induces relaxation of supercoiled plasmids in Borrelia burgdorferi, the Lyme disease agent |
| Q41395604 | Cruciform structures and functions |
| Q27629827 | Crystal structures of SarA, a pleiotropic regulator of virulence genes in S. aureus |
| Q40541628 | DNA Supercoiling Regulates the Motility of Campylobacter jejuni and Is Altered by Growth in the Presence of Chicken Mucus. |
| Q35607664 | DNA binding of the Bordetella pertussis H1 homolog alters in vitro DNA flexibility |
| Q41942088 | DNA is more negatively supercoiled in bacterial plasmids than in minichromosomes isolated from budding yeast |
| Q27730820 | DNA self-fitting: the double helix directs the geometry of its supramolecular assembly |
| Q37647700 | DNA supercoiling and environmental regulation of gene expression in pathogenic bacteria |
| Q42123918 | DNA supercoiling and the Lrp protein determine the directionality of fim switch DNA inversion in Escherichia coli K-12. |
| Q35185675 | DNA supercoiling and transcription control: a model from the study of suppression of the leu-500 mutation in Salmonella typhimurium topA- strains |
| Q41270290 | DNA supercoiling and transcription: topological coupling of promoters. |
| Q71758216 | DNA supercoiling in a thermotolerant mutant of Escherichia coli |
| Q42611490 | DNA supercoiling response of the σ54-dependent Klebsiella pneumoniae nifL promoter in vitro |
| Q37856959 | DNA supercoiling-dependent gene regulation in Chlamydia |
| Q40656523 | DNA topoisomerase I controls the kinetics of promoter activation and DNA topology in Saccharomyces cerevisiae |
| Q41315281 | DNA topoisomerase inhibitors as antifungal agents. |
| Q36758354 | DNA topoisomerases from pathogenic fungi: targets for the discovery of antifungal drugs |
| Q39929664 | DNA topology affects transcriptional regulation of the pertussis toxin gene of Bordetella pertussis in Escherichia coli and in vitro |
| Q33938282 | DNA transcription and repressor binding affect deletion formation in Escherichia coli plasmids |
| Q35744310 | DNA twist as a transcriptional sensor for environmental changes |
| Q40789975 | DNA twist, flexibility and transcription of the osmoregulated proU promoter of Salmonella typhimurium. |
| Q36058225 | Dental abnormalities in Schimke immuno-osseous dysplasia. |
| Q33289770 | Detection of novel secondary metabolites. |
| Q37896217 | Developmental-stage-specific plasmid supercoiling in Chlamydia trachomatis |
| Q41063848 | Differential control of transcription-induced and overall DNA supercoiling by eukaryotic topoisomerases in vitro. |
| Q46375068 | Differential expression of the partially duplicated chloroplast S10 ribosomal protein operon |
| Q54637995 | Differential influence of DNA supercoiling on in vivo strength of promoters varying in structure and organisation in E. coli. |
| Q67729392 | Direct evidence for the effect of transcription on local DNA supercoiling in vivo |
| Q54577126 | DnaK heat shock protein of Escherichia coli maintains the negative supercoiling of DNA against thermal stress. |
| Q36155823 | Dramatic increase in negative superhelicity of plasmid DNA in the forespore compartment of sporulating cells of Bacillus subtilis |
| Q37375280 | Dual regulation of open-complex formation and promoter clearance by Arc explains a novel repressor to activator switch |
| Q37289509 | Dynamics of DNA supercoiling by transcription in Escherichia coli |
| Q35839621 | Effect of in vitro transcription on cruciform stability |
| Q33920270 | Effect of transcription of yeast chromatin on DNA topology in vivo |
| Q64969541 | Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance. |
| Q89926099 | Emerging roles for R-loop structures in the management of topological stress |
| Q33781727 | Endogenous fluctuations of DNA topology in the chloroplast of Chlamydomonas reinhardtii |
| Q39837211 | Energy buffering of DNA structure fails when Escherichia coli runs out of substrate |
| Q39830102 | Environmental regulation of fimbrial gene expression in Porphyromonas gingivalis. |
| Q54691321 | Environmentally regulated algD promoter is responsive to the cAMP receptor protein in Escherichia coli. |
| Q40642437 | Evidence for torsional stress in transcriptionally activated chromatin |
| Q39841795 | Evidence that the hanA gene coding for HU protein is essential for heterocyst differentiation in, and cyanophage A-4(L) sensitivity of, Anabaena sp. strain PCC 7120. |
| Q36984314 | Expression of Salmonella typhimurium genes required for invasion is regulated by changes in DNA supercoiling |
| Q57393894 | Extensive regulation compromises the extent to which DNA gyrase controls DNA supercoiling and growth rate ofEscherichia coli |
| Q98158483 | FEDS: a Novel Fluorescence-Based High-Throughput Method for Measuring DNA Supercoiling In Vivo |
| Q57367382 | Fluorescence Microscopy of the Dynamics of Supercoiling, Folding, and Condensation of Bacterial Chromosomes, Induced by Acridine Orange |
| Q34152536 | Folded DNA in action: hairpin formation and biological functions in prokaryotes. |
| Q52009492 | From genes to genomes: universal scale-invariant properties of microbial chromosome organisation. |
| Q41475410 | Genes on a Wire: The Nucleoid-Associated Protein HU Insulates Transcription Units in Escherichia coli |
| Q37416126 | Genome-Wide Transcriptional Regulation and Chromosome Structural Arrangement by GalR in E. coli. |
| Q24809586 | Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli |
| Q24791355 | Global orchestration of gene expression by the biological clock of cyanobacteria |
| Q37890642 | Hc1-mediated effects on DNA structure: a potential regulator of chlamydial development |
| Q73829480 | Heat shock-induced excessive relaxation of DNA in Escherichia coli mutants lacking the histone-like protein HU |
| Q39944291 | Identification and characterization of gyrB mutants of Escherichia coli that are defective in partitioning of mini-F plasmids |
| Q47322824 | In vitro transcription-translation using bacterial genome as a template to reconstitute intracellular profile. |
| Q42618349 | In vivo restriction. Sequence and structure of endonuclease II-dependent cleavage sites in bacteriophage T4 DNA |
| Q36181544 | Induction of anaerobic gene expression in Rhodobacter capsulatus is not accompanied by a local change in chromosomal supercoiling as measured by a novel assay |
| Q35952935 | Interaction of topoisomerase 1 with the transcribed region of the Drosophila HSP 70 heat shock gene |
| Q40507454 | Intercalation of psoralen into DNA of plastid chromosomes decreases late during barley chloroplast development |
| Q40107797 | Involvement of topoisomerases in replication, transcription, and packaging of the linear adenovirus genome |
| Q38340230 | Kinetic studies of the modulation of ada promoter activity by upstream elements |
| Q40400010 | Large-scale opening of A + T rich regions within supercoiled DNA molecules is suppressed by salt. |
| Q35839244 | Light affects the structure of Chlamydomonas chloroplast chromosomes |
| Q37197641 | Local DNA topology and gene expression: the case of the leu-500 promoter |
| Q34922005 | Local supercoil-stabilized DNA structures |
| Q50142767 | Long-range interaction between two promoters: Activation of the leu-500 promoter by a distant upstream promoter |
| Q34570839 | Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection |
| Q54241795 | Mechanism of initiation of transcription by Escherichia coli RNA polymerase on supercoiled template. |
| Q40583683 | Mechanism of transcription activation at the comG promoter by the competence transcription factor ComK of Bacillus subtilis |
| Q47915615 | Mechanisms of subzero growth in the cryophile Planococcus halocryophilus determined through proteomic analysis |
| Q37530602 | Microbial thermosensors. |
| Q40794043 | Modulation of tyrT promoter activity by template supercoiling in vivo |
| Q42645491 | Molecular characterization of the proU loci of Salmonella typhimurium and Escherichia coli encoding osmoregulated glycine betaine transport systems |
| Q50182668 | Mutations in topA interfere with the inducible expression of DNA damage response loci in salmonella typhimurium |
| Q33597668 | Mycobacterial promoters |
| Q36201629 | No promoter left behind: global circadian gene expression in cyanobacteria |
| Q39943038 | Novobiocin-dependent topA deletion mutants of Escherichia coli |
| Q36965007 | Nucleosome loss activates CUP1 and HIS3 promoters to fully induced levels in the yeast Saccharomyces cerevisiae |
| Q46552388 | Nucleotide requirements for activated RNA polymerase II open complex formation in vitro |
| Q39885164 | Nucleotide sequence of the adi gene, which encodes the biodegradative acid-induced arginine decarboxylase of Escherichia coli |
| Q27024540 | On the role of DNA biomechanics in the regulation of gene expression |
| Q50194140 | Osmotic regulation of porin expression: a role for DNA supercoiling |
| Q36125847 | Osmotic signal transduction to proU is independent of DNA supercoiling in Escherichia coli |
| Q36452129 | Paranemic structures of DNA and their role in DNA unwinding |
| Q35950455 | Penetrance of biallelic SMARCAL1 mutations is associated with environmental and genetic disturbances of gene expression |
| Q41610154 | Physiology of carbohydrate to solvent conversion by clostridia |
| Q37325327 | Positive supercoiling of DNA greatly diminishes mRNA synthesis in yeast |
| Q34033899 | Potent stimulation of transcription-coupled DNA supercoiling by sequence-specific DNA-binding proteins |
| Q40693748 | Promoters responsive to DNA bending: a common theme in prokaryotic gene expression |
| Q37834160 | Protein H1: a role for chromatin structure in the regulation of bacterial gene expression and virulence? |
| Q50143306 | RNA polymerase (rpoB) mutants selected for increased resistance to gyrase inhibitors in Salmonella typhimurium |
| Q41824013 | RecA-dependent increased precise excision of Tn10 in Salmonella typhimurium |
| Q61836055 | Regulation of gene expression at a distance: the hypothetical role of regulatory protein-mediated topological changes of DNA |
| Q33886892 | Repressor induced site-specific binding of HU for transcriptional regulation |
| Q73538480 | Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli |
| Q33991783 | Saturation mutagenesis of the TATA box and upstream activator sequence in the haloarchaeal bop gene promoter. |
| Q40524926 | Selection for mutations in the PR promoter of bacteriophage lambda |
| Q36131125 | Sequence analysis and expression of the Salmonella typhimurium asr operon encoding production of hydrogen sulfide from sulfite |
| Q39723902 | Sequence specificity of illegitimate plasmid recombination in Bacillus subtilis: possible recognition sites for DNA topoisomerase I. |
| Q41961468 | Silencing of glycopeptide resistance in Enterococcus faecalis BM4405 by novobiocin |
| Q42570298 | Simulation of DNA Supercoil Relaxation |
| Q34316819 | Simultaneous coexpression of Borrelia burgdorferi Erp proteins occurs through a specific, erp locus-directed regulatory mechanism |
| Q33983666 | Single-molecule studies on the mechanical interplay between DNA supercoiling and H-NS DNA architectural properties |
| Q36212623 | Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci |
| Q33730508 | Small abundant DNA binding proteins from the thermoacidophilic archaeon Sulfolobus shibatae constrain negative DNA supercoils. |
| Q34045968 | Stably maintained microdomain of localized unrestrained supercoiling at a Drosophila heat shock gene locus |
| Q52401218 | Statistical mechanical approach for predicting the transition to non-B DNA structures in supercoiled DNA. |
| Q33976650 | Strength and regulation of the different promoters for chromosomal beta-lactamases of Klebsiella oxytoca |
| Q30574200 | Structural attributes of nucleotide sequences in promoter regions of supercoiling-sensitive genes: how to relate microarray expression data with genomic sequences |
| Q50143127 | Supercoiling and map stability in the bacterial chromosome |
| Q59133084 | Supercoiling of an excised genomic island represses effector gene expression to prevent activation of host resistance |
| Q33315558 | Superhelical destabilization in regulatory regions of stress response genes |
| Q40540129 | Superhelical stress restrained in plasmid DNA during repair synthesis initiated by the UvrA, B and C proteins in vitro |
| Q35607216 | Surveying a supercoil domain by using the gamma delta resolution system in Salmonella typhimurium |
| Q28254988 | The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin |
| Q48080387 | The Salmonella typhimurium invasion genes invF and invG encode homologues of the AraC and PulD family of proteins |
| Q40399824 | The beta recombinase from the Streptococcal plasmid pSM 19035 represses its own transcription by holding the RNA polymerase at the promoter region |
| Q45998644 | The evolution of the cyanobacterial posttranslational clock from a primitive "phoscillator". |
| Q50158008 | The influence of DNA topology on the environmental regulation of a pH-regulated locus in Salmonella typhimurium |
| Q34972682 | The main early and late promoters of Bacillus subtilis phage phi 29 form unstable open complexes with sigma A-RNA polymerase that are stabilized by DNA supercoiling |
| Q38730753 | The nucleoskeleton and the topology of transcription |
| Q35230335 | The roles of transcription and genotoxins underlying p53 mutagenesis in vivo |
| Q52878709 | The site-specific recombination system regulating expression of the type 1 fimbrial subunit gene of Escherichia coli is sensitive to changes in DNA supercoiling. |
| Q34149509 | The spatial organization of the VirR boxes is critical for VirR-mediated expression of the perfringolysin O gene, pfoA, from Clostridium perfringens |
| Q37874976 | The torsional state of DNA within the chromosome |
| Q33809365 | Theoretical analysis of the stress induced B-Z transition in superhelical DNA. |
| Q41499692 | Thermoregulation in Yersinia enterocolitica is coincident with changes in DNA supercoiling |
| Q38068486 | Thermosensing to adjust bacterial virulence in a fluctuating environment |
| Q54649317 | Topoisomerase mutations affect the relative abundance of many Escherichia coli proteins. |
| Q40898455 | Topological constraints impair RNA polymerase II transcription and causes instability of plasmid-borne convergent genes |
| Q36661286 | Topological domain structure of the Escherichia coli chromosome |
| Q39932379 | Topological promoter coupling in Escherichia coli: delta topA-dependent activation of the leu-500 promoter on a plasmid |
| Q54561141 | Topology-dependent transcription in linear and circular plasmids of the segmented genome of Borrelia burgdorferi. |
| Q40533054 | Transcription by an immobilized RNA polymerase from bacteriophage T7 and the topolgy of transcription |
| Q40534265 | Transcription frequency modulates the efficiency of an attenuator preceding the rpoBC RNA polymerase genes of Escherichia coli: possible autogenous control |
| Q37509279 | Transcription influences the types of deletion and expansion products in an orientation-dependent manner from GAC*GTC repeats |
| Q40733632 | Transcription, topoisomerases and recombination |
| Q36295522 | Transcription-coupled hypernegative supercoiling of plasmid DNA by T7 RNA polymerase in Escherichia coli topoisomerase I-deficient strains |
| Q37073264 | Transcription-induced barriers to supercoil diffusion in the Salmonella typhimurium chromosome |
| Q36257868 | Transcriptional induction of purple membrane and gas vesicle synthesis in the archaebacterium Halobacterium halobium is blocked by a DNA gyrase inhibitor |
| Q59097717 | Transcriptional silencing and thermoregulation of gene expression in Escherichia coli |
| Q40453398 | Unexpected effects on bacterial phenotype induced by expression of a tumour-amplified human sequence. |
| Q35940456 | Z-DNA as a probe for localized supercoiling in vivo |
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