Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data

scientific article published on 23 August 2017

Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1091310319
P356DOI10.1186/S13039-017-0333-5
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/s13039-017-0333-5
P932PMC publication ID5569469
P698PubMed publication ID28852425

P2093author name stringJian Wang
Cheng Zhang
Yiping Shen
Tingting Yu
Niu Li
Xiumin Wang
Xuyun Hu
Ruen Yao
P2860cites workComputational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectivesQ21284304
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Mapping copy number variation by population-scale genome sequencingQ24615307
Targeted capture and massively parallel sequencing of 12 human exomesQ24615381
Fast and accurate short read alignment with Burrows-Wheeler transformQ24653853
Array-based technology and recommendations for utilization in medical genetics practice for detection of chromosomal abnormalitiesQ28296227
CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencingQ28305453
Copy number variation detection and genotyping from exome sequence dataQ30422583
Identification of copy number variants through whole-exome sequencing in autosomal recessive nonsyndromic hearing loss.Q30586706
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorderQ30671413
Using XHMM Software to Detect Copy Number Variation in Whole-Exome Sequencing DataQ30808425
Identification of copy number variants from exome sequence dataQ30841251
Detecting copy-number variations in whole-exome sequencing data using the eXome Hidden Markov Model: an 'exome-first' approachQ30885441
Personalized copy number and segmental duplication maps using next-generation sequencing.Q33498358
The promise of whole-exome sequencing in medical geneticsQ34382912
Comparative studies of copy number variation detection methods for next-generation sequencing technologiesQ34634689
An evaluation of copy number variation detection tools from whole-exome sequencing dataQ35112178
Detection of clinically relevant exonic copy-number changes by array CGH.Q35172112
Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variantsQ35567101
Comparison of sequencing based CNV discovery methods using monozygotic twin quartetsQ35587793
Copy number variants, aneuploidies, and human diseaseQ35694174
Discovery and statistical genotyping of copy-number variation from whole-exome sequencing depthQ36358463
Structural variation of the human genomeQ36509260
Chromosomal microarray analysis as a first-line test in pregnancies with a priori low risk for the detection of submicroscopic chromosomal abnormalitiesQ37044378
Outlier-based identification of copy number variations using targeted resequencing in a small cohort of patients with Tetralogy of FallotQ37439388
Exome sequence read depth methods for identifying copy number changesQ38244501
Exome sequencing and whole genome sequencing for the detection of copy number variationQ38531649
Comparative study of exome copy number variation estimation tools using array comparative genomic hybridization as controlQ42875652
Clinical relevance of small copy-number variants in chromosomal microarray clinical testing.Q48352847
Copy number variation sequencing for comprehensive diagnosis of chromosome disease syndromesQ88223992
P304page(s)30
P577publication date2017-08-23
P1433published inMolecular CytogeneticsQ15761790
P1476titleEvaluation of three read-depth based CNV detection tools using whole-exome sequencing data
P478volume10

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cites work (P2860)
Q89450343A highly sensitive and specific workflow for detecting rare copy-number variants from exome sequencing data
Q92571391A machine-learning approach for accurate detection of copy number variants from exome sequencing
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Q96640503CNVs cause autosomal recessive genetic diseases with or without involvement of SNV/indels
Q98945958CRISPR-Cas9 enrichment and long read sequencing for fine mapping in plants
Q90076304Comparative study of whole exome sequencing-based copy number variation detection tools
Q64286985Comparison of kNN and k-means optimization methods of reference set selection for improved CNV callers performance
Q64044350Concurrent somatic KRAS mutation and germline 10q22.3-q23.2 deletion in a patient with juvenile myelomonocytic leukemia, developmental delay, and multiple malformations: a case report
Q88584638Copy Number Variation Disorders
Q101141395Efficient detection of copy-number variations using exome data: batch- and sex-based analyses
Q100761955High plasma salivary α-amylase, but not high AMY1 copy number, associated with low obesity rate in Qatari adults: cross-sectional study
Q92180784Implementation of a genomic medicine multi-disciplinary team approach for rare disease in the clinical setting: a prospective exome sequencing case series
Q55042995Next-generation sequencing approach for the diagnosis of human diseases: open challenges and new opportunities.
Q59808730Perspectives on the Genomics of HSP Beyond Mendelian Inheritance
Q89510919Rapid, Paralog-Sensitive CNV Analysis of 2457 Human Genomes Using QuicK-mer2
Q90592470Repurposing of Diagnostic Whole Exome Sequencing Data of 1,583 Individuals for Clinical Pharmacogenetics
Q90176997SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences From Reference Genomes
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Q99552143The Application of Next-Generation Sequencing (NGS) in Neonatal-Onset Urea Cycle Disorders (UCDs): Clinical Course, Metabolomic Profiling, and Genetic Findings in Nine Chinese Hyperammonemia Patients
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