Two New Tools for Glycopeptide Analysis Researchers: A Glycopeptide Decoy Generator and a Large Data Set of Assigned CID Spectra of Glycopeptides

scientific article published on 10 July 2017

Two New Tools for Glycopeptide Analysis Researchers: A Glycopeptide Decoy Generator and a Large Data Set of Assigned CID Spectra of Glycopeptides is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1021/ACS.JPROTEOME.7B00289
P932PMC publication ID6785177
P698PubMed publication ID28691494

P50authorHeather DesaireQ88272015
P2093author name stringEden P Go
Xiaomeng Su
Zhikai Zhu
David Hua
Jude C Lakbub
Milani W Patabandige
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Cetuximab-induced anaphylaxis and IgE specific for galactose-alpha-1,3-galactoseQ30441575
New glycoproteomics software, GlycoPep Evaluator, generates decoy glycopeptides de novo and enables accurate false discovery rate analysis for small data setsQ30843574
A review of methods for interpretation of glycopeptide tandem mass spectral data.Q31028719
Altered glycosylation pattern allows the distinction between prostate-specific antigen (PSA) from normal and tumor origins.Q31134565
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Simultaneous analysis of glycosylated and sialylated prostate-specific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissuesQ34541208
GlycoPep Detector: a tool for assigning mass spectrometry data of N-linked glycopeptides on the basis of their electron transfer dissociation spectraQ34627486
Qualitative and quantitative assessment on the use of magnetic nanoparticles for glycopeptide enrichmentQ35013232
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Characterization of Transferrin Glycopeptide Structures in Human Cerebrospinal FluidQ35801685
Comparative Analysis of the Glycosylation Profiles of Membrane-Anchored HIV-1 Envelope Glycoprotein Trimers and Soluble gp140Q35914280
GlycoPep grader: a web-based utility for assigning the composition of N-linked glycopeptidesQ36074398
Addition of carbohydrate side chains at novel sites on influenza virus hemagglutinin can modulate the folding, transport, and activity of the moleculeQ36221015
A classifier based on accurate mass measurements to aid large scale, unbiased glycoproteomicsQ36742387
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Effects of glycosylation on the stability of protein pharmaceuticalsQ37114305
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Recombinant antibody therapeutics: the impact of glycosylation on mechanisms of actionQ37529994
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Antibody glycosylation and its impact on the pharmacokinetics and pharmacodynamics of monoclonal antibodies and Fc-fusion proteinsQ38420700
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GlycoPep MassList: software to generate massive inclusion lists for glycopeptide analysesQ39403495
Glycosylation site-specific analysis of clade C HIV-1 envelope proteinsQ39824069
MAGIC: an automated N-linked glycoprotein identification tool using a Y1-ion pattern matching algorithm and in silico MS² approachQ41514465
Glycoprotein profiling by electrospray mass spectrometryQ44879251
Computational framework for identification of intact glycopeptides in complex samplesQ45347502
Glycosylation profiling of immunoglobulin G (IgG) subclasses from human serumQ46906327
Mass spectrometry-based glycomics strategy for exploring N-linked glycosylation in eukaryotes and bacteria.Q59621002
GlycoPep DB: a tool for glycopeptide analysis using a "Smart Search"Q79768632
GlycoMaster DB: software to assist the automated identification of N-linked glycopeptides by tandem mass spectrometryQ87549145
P433issue8
P407language of work or nameEnglishQ1860
P304page(s)3002-3008
P577publication date2017-07-10
P1433published inJournal of Proteome ResearchQ3186939
P1476titleTwo New Tools for Glycopeptide Analysis Researchers: A Glycopeptide Decoy Generator and a Large Data Set of Assigned CID Spectra of Glycopeptides
P478volume16

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cites work (P2860)
Q52584383Dissecting the Dissociation Patterns of Fucosylated Glycopeptides Undergoing CID: A Case Study in Improving Automated Glycopeptide Analysis Scoring Algorithms.
Q52314597Identification of Poly-N-Acetyllactosamine-Carrying Glycoproteins from HL-60 Human Promyelocytic Leukemia Cells Using a Site-Specific Glycome Analysis Method, Glyco-RIDGE.
Q104738685Recent advancements in glycoproteomic studies: Glycopeptide enrichment and derivatization, characterization of glycosylation in SARS CoV2, and interacting glycoproteins
Q90447410Recent advances in mass spectrometry (MS)-based glycoproteomics in complex biological samples

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